
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Clinical_Cnvsarms_onlysig/broadinstitute.org/cancer.genome.analysis/00498/20/CNV2ClinicalAnalysis_nozzle_onlysig_arm.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Clinical_Cnvsarms_onlysig/broadinstitute.org/cancer.genome.analysis/00498/20/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/cnvarms2cluster/GBM-TP/3477749/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/GBM-TP/3351055/GBM-TP.clin.merged.picked.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=GBM-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oT=GBM-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=574, in cluster file=563, common to both=552
[1] "Reduce the number of clustering variables from 80 to 79."
[1]  79 552
[1] "1p gain"
[1] 3
      1P GAIN CNV 1P GAIN WILD-TYPE 
               38               514 
      1P GAIN CNV 1P GAIN WILD-TYPE 
               38               514 
[1] "1q gain"
[1] 3
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
               43               509 
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
               43               509 
[1] "2p gain"
[1] 3
      2P GAIN CNV 2P GAIN WILD-TYPE 
               19               533 
      2P GAIN CNV 2P GAIN WILD-TYPE 
               19               533 
[1] "2q gain"
[1] 3
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
               17               535 
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
               17               535 
[1] "3p gain"
[1] 3
      3P GAIN CNV 3P GAIN WILD-TYPE 
               30               522 
      3P GAIN CNV 3P GAIN WILD-TYPE 
               30               522 
[1] "3q gain"
[1] 3
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
               30               522 
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
               30               522 
[1] "4p gain"
[1] 3
      4P GAIN CNV 4P GAIN WILD-TYPE 
               15               537 
      4P GAIN CNV 4P GAIN WILD-TYPE 
               15               537 
[1] "4q gain"
[1] 3
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
               14               538 
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
               14               538 
[1] "5p gain"
[1] 3
      5P GAIN CNV 5P GAIN WILD-TYPE 
               29               523 
      5P GAIN CNV 5P GAIN WILD-TYPE 
               29               523 
[1] "5q gain"
[1] 3
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               22               530 
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               22               530 
[1] "6p gain"
[1] 3
      6P GAIN CNV 6P GAIN WILD-TYPE 
                7               545 
      6P GAIN CNV 6P GAIN WILD-TYPE 
                7               545 
[1] "6q gain"
[1] 3
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
                9               543 
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
                9               543 
[1] "7p gain"
[1] 3
      7P GAIN CNV 7P GAIN WILD-TYPE 
              427               125 
      7P GAIN CNV 7P GAIN WILD-TYPE 
              427               125 
[1] "7q gain"
[1] 3
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
              431               121 
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
              431               121 
[1] "8p gain"
[1] 3
      8P GAIN CNV 8P GAIN WILD-TYPE 
               26               526 
      8P GAIN CNV 8P GAIN WILD-TYPE 
               26               526 
[1] "8q gain"
[1] 3
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
               31               521 
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
               31               521 
[1] "9p gain"
[1] 3
      9P GAIN CNV 9P GAIN WILD-TYPE 
               17               535 
      9P GAIN CNV 9P GAIN WILD-TYPE 
               17               535 
[1] "9q gain"
[1] 3
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
               32               520 
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
               32               520 
[1] "10p gain"
[1] 3
      10P GAIN CNV 10P GAIN WILD-TYPE 
                11                541 
      10P GAIN CNV 10P GAIN WILD-TYPE 
                11                541 
[1] "11p gain"
[1] 3
      11P GAIN CNV 11P GAIN WILD-TYPE 
                 4                548 
      11P GAIN CNV 11P GAIN WILD-TYPE 
                 4                548 
[1] "11q gain"
[1] 3
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                 7                545 
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                 7                545 
[1] "12p gain"
[1] 3
      12P GAIN CNV 12P GAIN WILD-TYPE 
                41                511 
      12P GAIN CNV 12P GAIN WILD-TYPE 
                41                511 
[1] "12q gain"
[1] 3
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                31                521 
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                31                521 
[1] "13q gain"
[1] 3
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                 3                549 
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                 3                549 
[1] "14q gain"
[1] 3
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                 7                545 
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                 7                545 
[1] "15q gain"
[1] 3
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                 6                546 
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                 6                546 
[1] "16p gain"
[1] 3
      16P GAIN CNV 16P GAIN WILD-TYPE 
                17                535 
      16P GAIN CNV 16P GAIN WILD-TYPE 
                17                535 
[1] "16q gain"
[1] 3
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                17                535 
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                17                535 
[1] "17p gain"
[1] 3
      17P GAIN CNV 17P GAIN WILD-TYPE 
                11                541 
      17P GAIN CNV 17P GAIN WILD-TYPE 
                11                541 
[1] "17q gain"
[1] 3
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                19                533 
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                19                533 
[1] "18p gain"
[1] 3
      18P GAIN CNV 18P GAIN WILD-TYPE 
                26                526 
      18P GAIN CNV 18P GAIN WILD-TYPE 
                26                526 
[1] "18q gain"
[1] 3
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                28                524 
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                28                524 
[1] "19p gain"
[1] 3
      19P GAIN CNV 19P GAIN WILD-TYPE 
               172                380 
      19P GAIN CNV 19P GAIN WILD-TYPE 
               172                380 
[1] "19q gain"
[1] 3
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
               149                403 
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
               149                403 
[1] "20p gain"
[1] 3
      20P GAIN CNV 20P GAIN WILD-TYPE 
               176                376 
      20P GAIN CNV 20P GAIN WILD-TYPE 
               176                376 
[1] "20q gain"
[1] 3
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
               174                378 
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
               174                378 
[1] "21q gain"
[1] 3
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                34                518 
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                34                518 
[1] "22q gain"
[1] 3
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                11                541 
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                11                541 
[1] "Xq gain"
[1] 3
      XQ GAIN CNV XQ GAIN WILD-TYPE 
                3               549 
      XQ GAIN CNV XQ GAIN WILD-TYPE 
                3               549 
[1] "1p loss"
[1] 3
      1P LOSS CNV 1P LOSS WILD-TYPE 
                5               547 
      1P LOSS CNV 1P LOSS WILD-TYPE 
                5               547 
[1] "1q loss"
[1] 3
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
                4               548 
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
                4               548 
[1] "2p loss"
[1] 3
      2P LOSS CNV 2P LOSS WILD-TYPE 
               10               542 
      2P LOSS CNV 2P LOSS WILD-TYPE 
               10               542 
[1] "2q loss"
[1] 3
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
                9               543 
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
                9               543 
[1] "3p loss"
[1] 3
      3P LOSS CNV 3P LOSS WILD-TYPE 
               22               530 
      3P LOSS CNV 3P LOSS WILD-TYPE 
               22               530 
[1] "3q loss"
[1] 3
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
               16               536 
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
               16               536 
[1] "4p loss"
[1] 3
      4P LOSS CNV 4P LOSS WILD-TYPE 
               25               527 
      4P LOSS CNV 4P LOSS WILD-TYPE 
               25               527 
[1] "4q loss"
[1] 3
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
               24               528 
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
               24               528 
[1] "5p loss"
[1] 3
      5P LOSS CNV 5P LOSS WILD-TYPE 
               21               531 
      5P LOSS CNV 5P LOSS WILD-TYPE 
               21               531 
[1] "5q loss"
[1] 3
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
               20               532 
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
               20               532 
[1] "6p loss"
[1] 3
      6P LOSS CNV 6P LOSS WILD-TYPE 
               47               505 
      6P LOSS CNV 6P LOSS WILD-TYPE 
               47               505 
[1] "6q loss"
[1] 3
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
               79               473 
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
               79               473 
[1] "7p loss"
[1] 3
      7P LOSS CNV 7P LOSS WILD-TYPE 
                5               547 
      7P LOSS CNV 7P LOSS WILD-TYPE 
                5               547 
[1] "7q loss"
[1] 3
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
                4               548 
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
                4               548 
[1] "8p loss"
[1] 3
      8P LOSS CNV 8P LOSS WILD-TYPE 
               34               518 
      8P LOSS CNV 8P LOSS WILD-TYPE 
               34               518 
[1] "8q loss"
[1] 3
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
               21               531 
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
               21               531 
[1] "9p loss"
[1] 3
      9P LOSS CNV 9P LOSS WILD-TYPE 
              161               391 
      9P LOSS CNV 9P LOSS WILD-TYPE 
              161               391 
[1] "9q loss"
[1] 3
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
               63               489 
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
               63               489 
[1] "10p loss"
[1] 3
      10P LOSS CNV 10P LOSS WILD-TYPE 
               430                122 
      10P LOSS CNV 10P LOSS WILD-TYPE 
               430                122 
[1] "10q loss"
[1] 3
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
               443                109 
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
               443                109 
[1] "11p loss"
[1] 3
      11P LOSS CNV 11P LOSS WILD-TYPE 
                64                488 
      11P LOSS CNV 11P LOSS WILD-TYPE 
                64                488 
[1] "11q loss"
[1] 3
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                55                497 
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                55                497 
[1] "12p loss"
[1] 3
      12P LOSS CNV 12P LOSS WILD-TYPE 
                38                514 
      12P LOSS CNV 12P LOSS WILD-TYPE 
                38                514 
[1] "12q loss"
[1] 3
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                35                517 
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                35                517 
[1] "13q loss"
[1] 3
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
               136                416 
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
               136                416 
[1] "14q loss"
[1] 3
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
               120                432 
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
               120                432 
[1] "15q loss"
[1] 3
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
                62                490 
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
                62                490 
[1] "16p loss"
[1] 3
      16P LOSS CNV 16P LOSS WILD-TYPE 
                23                529 
      16P LOSS CNV 16P LOSS WILD-TYPE 
                23                529 
[1] "16q loss"
[1] 3
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
                40                512 
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
                40                512 
[1] "17p loss"
[1] 3
      17P LOSS CNV 17P LOSS WILD-TYPE 
                35                517 
      17P LOSS CNV 17P LOSS WILD-TYPE 
                35                517 
[1] "17q loss"
[1] 3
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                19                533 
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                19                533 
[1] "18p loss"
[1] 3
      18P LOSS CNV 18P LOSS WILD-TYPE 
                44                508 
      18P LOSS CNV 18P LOSS WILD-TYPE 
                44                508 
[1] "18q loss"
[1] 3
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
                39                513 
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
                39                513 
[1] "19p loss"
[1] 3
      19P LOSS CNV 19P LOSS WILD-TYPE 
                13                539 
      19P LOSS CNV 19P LOSS WILD-TYPE 
                13                539 
[1] "19q loss"
[1] 3
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
                18                534 
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
                18                534 
[1] "20p loss"
[1] 3
      20P LOSS CNV 20P LOSS WILD-TYPE 
                11                541 
      20P LOSS CNV 20P LOSS WILD-TYPE 
                11                541 
[1] "20q loss"
[1] 3
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
                10                542 
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
                10                542 
[1] "21q loss"
[1] 3
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
                25                527 
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
                25                527 
[1] "22q loss"
[1] 3
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
               140                412 
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
               140                412 
[1] "Xq loss"
[1] 3
      XQ LOSS CNV XQ LOSS WILD-TYPE 
               11               541 
      XQ LOSS CNV XQ LOSS WILD-TYPE 
               11               541 
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "KARNOFSKYPERFORMANCESCORE"             
[10] "HISTOLOGICALTYPE"                      
[11] "RADIATIONS.RADIATION.REGIMENINDICATION"
[12] "BATCHNUMBER"                           

Input Data has 12 rows and 552 columns.

[1] "Batch" "12"   
[1] "Last Follow UP"
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
         278          144          558          705          322         1077 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
         630         2511          627         1699         2361          612 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
        1614         1300          748          315         2755           86 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
         430          109          326          320          556          208 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
         447           97          458          383          199           76 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
         604          254          291          183          600          804 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
         873          762          167          310          634          828 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
        2729          691            7         1560          268         1757 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
         515          106          821         1977          355          537 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
         704         2817         3040          476         1489          503 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
         514          538          327          440          121          422 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
         432          485          372          300          234          323 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
           5          484          782          133          764          322 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
         377          441          321         1433          345          281 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
         492          102          511          393          465          469 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
         492           NA            8          123         1439            3 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
         108          691          988          320          570          428 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
         701          674          327           NA          280           NA 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
         357           71          611          508          298          238 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
          NA           NA          359          389          263           97 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
         166           NA           NA           78         1729           NA 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
         161          579           95          396            7           67 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
          83         1561           60         1642          578           77 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
        1228         1126          801          866          454          313 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
         556          142          214           79           12          196 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
         166          118          151          360            6          378 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 
         684           10          548          314          359          455 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
         313          168            8         2145          142          245 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
           5         1065          375           98          136          293 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
          62          717          285          678          594          163 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
          82           65           28          279          271          204 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
         218          699          178          165          637          226 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
         193          109          815          263          239          413 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
         127           33           23          149          282           86 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
         259          181          207          182          133           13 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
         285          341          107          254          138          268 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
         273          260          204           83          114          186 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
         138          119          236          163           44           15 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
         224          252          391          145           47          145 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
         151          690         1057          119         3310           53 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
         132          419          316          231          103         1636 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
          39          195          458          685          447         1084 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
         593           29          279          330          478           97 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
         322            9           17          106          358          259 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
         561         1770           39          326          146          198 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
         486          526          168          426          438           49 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
         316          181           NA          218         2004            3 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
        1161          790          734          185           80          550 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
          NA          378         1615         1311          167          277 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
         451          434         2790          753          562          323 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
         715          845         1179          271          626         3880 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
         177          189          929          658          364          346 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
         482          277          442          121          103          287 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
         769          414          194         1807         1314          784 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
         351          333          358         1050          357          398 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
          98           61          459          364           29          188 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
         701           68          342          418           99           41 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
         164           88          502          801           62          879 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
         485          587           24           42           34          114 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
         974         1788          703          216           35          917 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
          28         1245          186          378           30           59 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
         540          542          232          179          217          532 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 
         242          114          103          300          581         1618 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 
         167          119          302          793          496          130 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
         882           25          301          406          111          556 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 
         425          195          358          665          262           13 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 
         434          103          327          276          181          394 
TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
         141          772          106          217          385           99 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
           4          294          148           33          229            5 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
         124          501          213          214          202          343 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
         244          567          144          242           54          198 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
         164          161          165          305          422          296 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
         953          216          285          286          452          167 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
         269           37           48          241           70          146 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
         504           NA          555         1008          648          914 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
         427          350          752          316          316          489 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
         231           87          438          479            6           77 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
         279          253          231          257           36           46 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 
          86            4           20          205          145          222 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
         160          119          275          473           77          358 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
         298          432          237          415          128          259 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
         319          165          467          641           15            3 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
         482          593           36          142          386          451 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 
         515          372          632          456          485          223 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
         269          270          224          400          112          383 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
         356          330          165           26          406          272 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
         290           30          135          183            6          351 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
         235          105          533          131          436          250 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
         227          145          138           94          111          278 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
          77          328          507          100           82          346 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
         519          253          637          147          153            7 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
         281          234          236           49          538            2 
Variable 1:'AGE':	nDistinctValues=72,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=341,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=397,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=23,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'BATCH.NUMBER':	nDistinctValues=18,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "GENDER"                                
[3] "KARNOFSKY.PERFORMANCE.SCORE"           
[4] "HISTOLOGICAL.TYPE"                     
[5] "RADIATIONS.RADIATION.REGIMENINDICATION"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 552 columns, 1 survival variables, and 5 non-survival variables.
AGE, nv=72, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=7, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1p gain
D1V1, survival
                   sevent
clus2                 0   1
  1P GAIN CNV         9  29
  1P GAIN WILD-TYPE 124 390
      1P GAIN CNV 1P GAIN WILD-TYPE 
               38               514 
      1P GAIN CNV 1P GAIN WILD-TYPE 
               29               390 
$`1P GAIN CNV`
TCGA-02-0113 TCGA-02-0266 TCGA-02-0451 TCGA-06-0133 TCGA-06-0152 TCGA-06-0168 
       92.61        17.69        16.18        14.07        11.80        19.04 
TCGA-06-0177 TCGA-06-0182 TCGA-06-0195 TCGA-06-0209 TCGA-06-1084 TCGA-06-2557 
        1.97         2.53         7.04         3.88         7.43         1.08 
TCGA-06-6698 TCGA-08-0349 TCGA-08-0350 TCGA-08-0531 TCGA-12-0619 TCGA-12-0662 
        4.77         7.59         3.39         5.52        10.39        38.17 
TCGA-12-0773 TCGA-12-1598 TCGA-14-0783 TCGA-14-0817 TCGA-14-0867 TCGA-14-1034 
       43.10         9.44         6.18         5.39         2.04        15.95 
TCGA-14-1452 TCGA-14-1454 TCGA-14-1823 TCGA-14-1827 TCGA-15-0742 TCGA-19-1787 
        7.10        30.15        17.82         5.88         9.86        12.66 
TCGA-19-2625 TCGA-19-4065 TCGA-26-1440 TCGA-26-6173 TCGA-28-2509 TCGA-28-5216 
        4.08         7.04         9.73         7.92         4.77        13.64 
TCGA-32-1987 TCGA-32-5222 
       14.83         5.42 

$`1P GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.70         3.19        15.06        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       28.70        25.05         5.49        10.19        20.84        27.22 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       89.72        22.72         0.23        51.29         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.93         3.48        26.99        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       23.15        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.86         7.69        10.62         0.16        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0456 TCGA-02-2466 
       10.55        47.11        11.34         9.24         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.29        15.42        16.18         2.70         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
        4.04        47.31         0.10         3.55        22.72        32.48 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       10.52        18.74        23.05        22.16        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
        9.21         2.20        11.74         2.33        20.09        16.70 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 
        9.80         7.82        19.46        46.59        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19         5.46         9.44        11.80         2.56        56.84 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
       10.65         5.29         3.12        13.02         0.23         2.20 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0184 TCGA-06-0185 
        2.73        51.32        53.98        19.00        40.37        37.02 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       26.33        28.47        14.93        10.29        18.28         4.67 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 
        2.60         0.39         6.44         5.46         4.96        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 
        0.20        12.43        22.49         0.33        18.02        10.32 
TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       11.80        14.96        10.29         5.52         0.26        70.52 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        4.67         8.05         0.16        35.01        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        4.47         9.63         2.04        23.57         9.37        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.53         5.36         2.70         2.14         0.92         9.17 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
        8.91         6.71         7.17        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       20.94         6.35         3.58        26.79         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       13.58         4.18         0.76         4.90         9.27         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
        8.52         5.95         6.81         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        9.37        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         6.71         2.73         3.75         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        7.36         8.28        12.85         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
       22.68        34.75         3.91       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
       13.78        10.39        53.79         1.28         6.41        15.06 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       22.52        14.70        35.64        19.50         0.95         9.17 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       10.85        15.72         3.19        10.59         0.30         0.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
        3.48        11.77         8.52        18.44        58.19         1.28 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-12-0615 
       10.72         4.80         6.51        15.98        17.29        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 
       14.40         1.61         5.95        10.52         7.17        65.88 
TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
        0.10        25.97        24.13         6.08         2.63        18.08 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       28.37        12.43        53.10         5.49         9.11        14.83 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.27        91.73        24.76        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       27.78        38.76         8.91        20.58       127.56         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        6.21        30.54        21.63        11.97        11.38        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1599 TCGA-12-1600 
        9.11        14.53         3.98         3.39        25.28        13.61 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
        6.38        59.41        43.20        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       11.77        34.52        11.74        13.08         3.22         2.01 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       15.09        11.97         0.95        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
       13.74         3.25         1.35         2.89        16.50        26.33 
TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       28.90        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 
       32.02        58.78        23.11         1.15         0.92        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 
        6.12        12.43         0.99         1.94        17.75         7.63 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-1446 
        7.13        17.49         7.96         3.75         3.39        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 
       53.19         5.49         3.91         9.93        26.07        16.31 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.27        29.00         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       18.28        13.97         6.41        11.77        21.86         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 
       12.95         4.64        25.38         3.48         7.13         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
       16.47         7.00         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73         7.96         1.78         6.51         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
        5.42        10.03        13.87        31.33         7.10         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.84         1.22         1.58 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.18         1.51         2.83         0.13         0.66         6.74 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26         3.91         9.04        15.55         2.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 
       11.77         9.80        14.20         7.79         4.21         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
       10.49         5.42        15.35        21.07         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
       15.85        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 
       12.23        20.78        14.99        15.95         7.33         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
        8.88         7.36        13.15         3.68        12.59        11.70 
TCGA-32-4719 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       10.85         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44         6.02         0.20        11.54         7.73         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
       17.52         4.31        14.33         8.22         7.46         4.77 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 
        4.54         3.09         3.65         9.14         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.67         3.29         2.70        11.38        17.06         8.32 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.94         4.83         5.03         0.23         9.24         7.69 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.76         1.61        17.69         0.07 

      1P GAIN CNV 1P GAIN WILD-TYPE 
             1.08              0.07 
      1P GAIN CNV 1P GAIN WILD-TYPE 
            92.61            127.56 
      1P GAIN CNV 1P GAIN WILD-TYPE 
            7.755             9.650 
[1] "1.1 - 92.6 (7.8)"  "0.1 - 127.6 (9.7)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"       "1P GAIN CNV" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"1P GAIN WILD-TYPE"       "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
      "1P GAIN CNV" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN CNV         13   25
  1P GAIN WILD-TYPE  205  309
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  FEMALE          13               205
  MALE            25               309
D1V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  1P GAIN CNV                                   0                   1
  1P GAIN WILD-TYPE                             8                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  1P GAIN CNV                                    37
  1P GAIN WILD-TYPE                             489
D1V5, multiclass
                                 clus
vv                                1P GAIN CNV 1P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       1                17
  UNTREATED PRIMARY (DE NOVO) GBM          37               489
D1V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN CNV         28   10
  1P GAIN WILD-TYPE  353  161
     clus
vv    1P GAIN CNV 1P GAIN WILD-TYPE
  NO           28               353
  YES          10               161

Clustering(2) Variable = 1q gain
D2V1, survival
                   sevent
clus2                 0   1
  1Q GAIN CNV        12  31
  1Q GAIN WILD-TYPE 121 388
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
               43               509 
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
               31               388 
$`1Q GAIN CNV`
TCGA-02-0024 TCGA-02-0113 TCGA-02-0266 TCGA-02-0451 TCGA-06-0133 TCGA-06-0152 
       53.06        92.61        17.69        16.18        14.07        11.80 
TCGA-06-0168 TCGA-06-0177 TCGA-06-0182 TCGA-06-0195 TCGA-06-0209 TCGA-06-1084 
       19.04         1.97         2.53         7.04         3.88         7.43 
TCGA-06-2557 TCGA-06-2569 TCGA-06-6698 TCGA-08-0349 TCGA-08-0350 TCGA-08-0524 
        1.08         0.43         4.77         7.59         3.39         6.51 
TCGA-08-0531 TCGA-12-0619 TCGA-12-0662 TCGA-12-0773 TCGA-12-1598 TCGA-14-0783 
        5.52        10.39        38.17        43.10         9.44         6.18 
TCGA-14-0817 TCGA-14-0865 TCGA-14-0867 TCGA-14-0871 TCGA-14-1452 TCGA-14-1454 
        5.39        16.50         2.04        28.90         7.10        30.15 
TCGA-14-1823 TCGA-15-0742 TCGA-19-1791 TCGA-19-2625 TCGA-19-4065 TCGA-26-1440 
       17.82         9.86         0.13         4.08         7.04         9.73 
TCGA-26-6173 TCGA-28-2509 TCGA-28-5216 TCGA-28-5218 TCGA-32-1987 TCGA-32-5222 
        7.92         4.77        13.64         4.21        14.83         5.42 
TCGA-41-5651 
       11.54 

$`1Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 
       99.95        15.65        48.95        16.54        16.90        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.86         7.69        10.62         0.16        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       47.11        11.34         9.24         3.35        16.80        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.29        15.42        16.18         2.70         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.31         0.10         3.55        22.72        32.48        10.52 
TCGA-06-0132 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       18.74        23.05        22.16        10.75         0.20         9.21 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        16.70         9.80 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        7.82        19.46        46.59        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
        5.46         9.44        11.80         2.56        56.84        10.65 
TCGA-06-0166 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
        5.29         3.12        13.02         0.23         2.20         2.73 
TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       51.32        53.98        19.00        40.37        37.02        26.33 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 
       28.47        14.93        10.29        18.28         4.67         2.60 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        0.39         6.44         5.46         4.96        11.84         0.20 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
       12.43        22.49         0.33        18.02        10.32        11.80 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       14.96        10.29         5.52         0.26        70.52         4.67 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        8.05         0.16        35.01        12.33         3.22         4.47 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.63         2.04        23.57         9.37        22.29        19.53 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        5.36         2.70         2.14         0.92         9.17         8.91 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        6.71         7.17        22.98         5.85         5.42        20.94 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        6.35         3.58        26.79         8.65         7.86        13.58 
TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        4.18         0.76         4.90         9.27         2.83         8.52 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 
        5.95         6.81         5.98         4.37         9.37        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.52         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.12         4.54         3.91 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.76         5.36         1.45         0.49         7.36         8.28 
TCGA-06-6697 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 
       12.85         1.55         4.77         4.96        22.68        34.75 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
        3.91       108.82         1.74         4.34        13.78        10.39 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       53.79         1.28         6.41        15.06        22.52        14.70 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 
       35.64        19.50         0.95         9.17        10.85        15.72 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 
        3.19        10.59         0.30         0.56         3.48        11.77 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
        8.52        18.44        58.19         1.28        10.72         4.80 
TCGA-08-0525 TCGA-08-0529 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 
       15.98        17.29        14.01        14.40         1.61         5.95 
TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 
       10.52         7.17        65.88         0.10        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        5.49         9.11        14.83        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 
       18.48        10.62        23.51        27.78        38.76         8.91 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.56         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       11.97        11.38        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
        3.39        25.28        13.61         6.38        59.41        43.20 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       25.78        11.54        10.95        11.77        34.52        11.74 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 
       13.08         3.22         2.01        15.09        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.74         3.25         1.35 
TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
        2.89        26.33        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1453 
        1.12         3.75        32.02        58.78        23.11         1.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.93         6.12        12.43         0.99         1.94 
TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.75         7.63         5.88         7.13        17.49         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
        3.75         3.39        19.10        53.19         5.49         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        9.93        26.07        16.31         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
       10.75         9.07         5.95        12.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-2619 TCGA-19-2620 
        3.48         7.13        12.66         3.25         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 
        1.08         7.53         0.16        16.47         7.00         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        6.51         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       31.33         7.10         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        8.84         1.22         1.58         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        18.25        33.14        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.72        10.39        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.75         0.20         2.53         9.17 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
        8.32         7.59         8.45         1.18         1.51         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        0.13         0.66         6.74         7.30         5.26         3.91 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
        9.04        15.55         2.53        11.77         9.80        14.20 
TCGA-28-5215 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        7.79         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       12.69        16.93        12.23        20.78        14.99        15.95 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
        7.33         8.84         8.88         7.36        13.15         3.68 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       12.59        11.70        10.85         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 
        9.53         0.99         4.44         6.02         0.20         7.73 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        17.52         4.31        14.33         8.22         7.46 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.77         4.54         3.09         3.65         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

      1Q GAIN CNV 1Q GAIN WILD-TYPE 
             0.13              0.07 
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
            92.61            127.56 
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
             7.59              9.67 
[1] "0.1 - 92.6 (7.6)"  "0.1 - 127.6 (9.7)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV"       "1Q GAIN CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"       "1Q GAIN CNV" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
      "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"1Q GAIN WILD-TYPE"       "1Q GAIN CNV" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D2V2, continuous
D2V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN CNV         17   26
  1Q GAIN WILD-TYPE  201  308
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  FEMALE          17               201
  MALE            26               308
D2V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  1Q GAIN CNV                                   0                   2
  1Q GAIN WILD-TYPE                             8                  16
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  1Q GAIN CNV                                    41
  1Q GAIN WILD-TYPE                             485
D2V5, multiclass
                                 clus
vv                                1Q GAIN CNV 1Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       2                16
  UNTREATED PRIMARY (DE NOVO) GBM          41               485
D2V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN CNV         31   12
  1Q GAIN WILD-TYPE  350  159
     clus
vv    1Q GAIN CNV 1Q GAIN WILD-TYPE
  NO           31               350
  YES          12               159

Clustering(3) Variable = 2p gain
D3V1, survival
                   sevent
clus2                 0   1
  2P GAIN CNV         4  15
  2P GAIN WILD-TYPE 129 404
      2P GAIN CNV 2P GAIN WILD-TYPE 
               19               533 
      2P GAIN CNV 2P GAIN WILD-TYPE 
               15               404 
$`2P GAIN CNV`
TCGA-02-0001 TCGA-02-0113 TCGA-06-0133 TCGA-06-0151 TCGA-06-0877 TCGA-06-1086 
        9.14        92.61        14.07        46.59         6.71         6.35 
TCGA-06-2569 TCGA-06-6391 TCGA-08-0346 TCGA-08-0510 TCGA-08-0517 TCGA-08-0524 
        0.43         1.45         4.34         3.48        58.19         6.51 
TCGA-12-0778 TCGA-14-0871 TCGA-14-1823 TCGA-19-0957 TCGA-19-2629 TCGA-28-5218 
       14.83        28.90        17.82        21.86        16.47         4.21 
TCGA-74-6584 
        7.46 

$`2P GAIN WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.95        15.65        48.95        16.54        16.90        17.69 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.86         7.69        10.62         0.16        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       32.48        10.52        18.74        23.05        22.16        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20         9.21         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 
       16.70         9.80         7.82        19.46        11.80        12.79 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
        8.65         3.19         5.46         9.44        11.80         2.56 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       56.84        10.65         5.29        19.04         3.12        13.02 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
        0.23         2.20         2.73        51.32         1.97        53.98 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
       19.00         2.53        40.37        37.02        26.33        28.47 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       14.93        10.29        18.28         4.67         7.04         2.60 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 
        0.39         6.44         5.46         3.88         4.96        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 
        0.20        12.43        22.49         0.33        18.02        10.32 
TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       11.80        14.96        10.29         5.52         0.26        70.52 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        4.67         8.05         0.16        35.01        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        4.47         9.63         2.04        23.57         9.37        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.53         5.36         2.70         2.14         0.92         9.17 
TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        8.91         7.17        22.98         5.85         5.42        20.94 
TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        7.43         3.58        26.79         8.65         7.86        13.58 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
        4.18         1.08         0.76         4.90         9.27         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 
        8.52         5.95         6.81         5.98         4.37         9.37 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.21         3.52         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         6.71         2.73         3.75         6.12         4.54 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        3.91         7.76         5.36         0.49         7.36         8.28 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 
       12.85         4.77         1.55         4.77         4.96        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0347 TCGA-08-0348 
       34.75         3.91       108.82         1.74        13.78        10.39 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
        7.59         3.39        53.79         1.28         6.41        15.06 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       22.52        14.70        35.64        19.50         0.95         9.17 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       10.85        15.72         3.19        10.59         0.30         0.56 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
       11.77         8.52        18.44         1.28        10.72         4.80 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
       15.98        17.29         5.52        14.01        14.40         1.61 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       10.39         5.95        10.52         7.17        65.88         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        24.13         6.08         2.63        18.08 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.37        12.43        53.10        43.10         5.49         9.11 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.27        91.73        24.76        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       27.78        38.76         8.91        20.58       127.56         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        6.21        30.54        21.63        11.97        11.38        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 
        9.11        14.53         3.98         3.39         9.44        25.28 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       13.61         6.38        59.41        43.20        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.95        11.77        34.52        11.74        13.08         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        2.01        15.09        11.97         0.95         6.18        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
        2.24        11.24        13.74         3.25         1.35         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 
        2.89        16.50        26.33         2.04        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.02        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       23.11         7.10         1.15        30.15         0.92        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 
        6.12        12.43         0.99         1.94        17.75         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 
        5.88         7.13        17.49         7.96         3.75         3.39 
TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 
        9.86        19.10        53.19         5.49         3.91         9.93 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
       26.07        16.31         4.27        29.00         0.82         9.90 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       13.35         3.65        18.28        13.97         6.41        11.77 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.43        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 
        5.95        12.95         4.64        25.38         3.48         7.13 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        7.53         0.16         4.08         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        6.51         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
        9.73        31.33         7.10         9.37         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.84         1.22         1.58         7.92         2.30 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        4.80        16.57         9.86        18.25        33.14        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.72        10.39        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.17         8.32         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.51         2.83         0.13         0.66         6.74         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26         3.91         9.04        15.55         2.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 
       11.77         9.80        14.20         7.79        13.64         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
       10.49         5.42        15.35        21.07         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.83 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 
       16.93        12.23        20.78        14.99        15.95         7.33 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
        8.84         8.88         7.36        13.15         3.68        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       11.70        10.85         5.42         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44         6.02         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        7.73         3.45        17.52         4.31        14.33         8.22 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.77         4.54         3.09         3.65         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

      2P GAIN CNV 2P GAIN WILD-TYPE 
             0.43              0.07 
      2P GAIN CNV 2P GAIN WILD-TYPE 
            92.61            127.56 
      2P GAIN CNV 2P GAIN WILD-TYPE 
             9.14              9.57 
[1] "0.4 - 92.6 (9.1)"  "0.1 - 127.6 (9.6)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"2P GAIN WILD-TYPE"       "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"       "2P GAIN CNV" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
      "2P GAIN CNV" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN CNV         11    8
  2P GAIN WILD-TYPE  207  326
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  FEMALE          11               207
  MALE             8               326
D3V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  2P GAIN CNV                                   1                   1
  2P GAIN WILD-TYPE                             7                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  2P GAIN CNV                                    17
  2P GAIN WILD-TYPE                             509
D3V5, multiclass
                                 clus
vv                                2P GAIN CNV 2P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             1                 7
  TREATED PRIMARY GBM                       1                17
  UNTREATED PRIMARY (DE NOVO) GBM          17               509
D3V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN CNV         15    4
  2P GAIN WILD-TYPE  366  167
     clus
vv    2P GAIN CNV 2P GAIN WILD-TYPE
  NO           15               366
  YES           4               167

Clustering(4) Variable = 2q gain
D4V1, survival
                   sevent
clus2                 0   1
  2Q GAIN CNV         4  13
  2Q GAIN WILD-TYPE 129 406
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
               17               535 
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
               13               406 
$`2Q GAIN CNV`
TCGA-02-0001 TCGA-02-0113 TCGA-06-0133 TCGA-06-0151 TCGA-06-0877 TCGA-06-1086 
        9.14        92.61        14.07        46.59         6.71         6.35 
TCGA-06-2569 TCGA-08-0346 TCGA-08-0510 TCGA-08-0524 TCGA-12-0778 TCGA-14-0740 
        0.43         4.34         3.48         6.51        14.83        11.97 
TCGA-14-0871 TCGA-14-1823 TCGA-19-0957 TCGA-28-5218 TCGA-74-6584 
       28.90        17.82        21.86         4.21         7.46 

$`2Q GAIN WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.95        15.65        48.95        16.54        16.90        17.69 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.86         7.69        10.62         0.16        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       32.48        10.52        18.74        23.05        22.16        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20         9.21         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 
       16.70         9.80         7.82        19.46        11.80        12.79 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
        8.65         3.19         5.46         9.44        11.80         2.56 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       56.84        10.65         5.29        19.04         3.12        13.02 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
        0.23         2.20         2.73        51.32         1.97        53.98 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
       19.00         2.53        40.37        37.02        26.33        28.47 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       14.93        10.29        18.28         4.67         7.04         2.60 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 
        0.39         6.44         5.46         3.88         4.96        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 
        0.20        12.43        22.49         0.33        18.02        10.32 
TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       11.80        14.96        10.29         5.52         0.26        70.52 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        4.67         8.05         0.16        35.01        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        4.47         9.63         2.04        23.57         9.37        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.53         5.36         2.70         2.14         0.92         9.17 
TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        8.91         7.17        22.98         5.85         5.42        20.94 
TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        7.43         3.58        26.79         8.65         7.86        13.58 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
        4.18         1.08         0.76         4.90         9.27         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 
        8.52         5.95         6.81         5.98         4.37         9.37 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.21         3.52         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         6.71         2.73         3.75         6.12         4.54 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        3.91         7.76         5.36         1.45         0.49         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.28        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0347 
       22.68        34.75         3.91       108.82         1.74        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       10.39         7.59         3.39        53.79         1.28         6.41 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        9.17        10.85        15.72         3.19        10.59         0.30 
TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
        0.56        11.77         8.52        18.44        58.19         1.28 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
       10.72         4.80        15.98        17.29         5.52        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 
       14.40         1.61        10.39         5.95        10.52         7.17 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       65.88         0.10        38.17        25.97        24.13         6.08 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        2.63        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        5.49         9.11        14.27        91.73        24.76        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       10.62        23.51        27.78        38.76         8.91        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
      127.56         5.82         6.21        30.54        21.63        11.97 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
       11.38        15.85         9.11        14.53         3.98         3.39 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
        9.44        25.28        13.61         6.38        59.41        43.20 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       25.78        11.54        10.95        11.77        34.52        11.74 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 
       13.08         3.22         2.01        15.09         0.95         6.18 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.74         3.25         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 
        5.39         2.89        16.50        26.33         2.04        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       19.30         0.79         1.38         1.12         3.75        32.02 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
       58.78        23.11         7.10         1.15        30.15         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
       40.93         6.12        12.43         0.99         1.94        17.75 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.13        17.49         7.96         3.75 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
        3.39         9.86        19.10        53.19         5.49         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        9.93        26.07        16.31         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       11.77         8.61         0.43        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 
        9.07         5.95        12.95         4.64        25.38         3.48 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        7.13        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        16.47         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        11.28         8.02        18.64         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        7.96         1.78         6.51         5.39         5.29         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
       10.03        13.87         9.73        31.33         7.10         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.84         1.22         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       10.39        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.75         0.20         2.53         9.17         8.32         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.45         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        6.74         4.77         7.30         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.55         2.53        11.77         9.80        14.20         7.79 
TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
       13.64         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.95         7.33         8.84         8.88         7.36        13.15 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.68        12.59        11.70        10.85         5.42         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44         6.02 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        11.54         7.73         3.45        17.52         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
       14.33         8.22         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.32        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

      2Q GAIN CNV 2Q GAIN WILD-TYPE 
             0.43              0.07 
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
            92.61            127.56 
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
             9.14              9.57 
[1] "0.4 - 92.6 (9.1)"  "0.1 - 127.6 (9.6)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"       "2Q GAIN CNV" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"2Q GAIN WILD-TYPE"       "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
      "2Q GAIN CNV" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN CNV          9    8
  2Q GAIN WILD-TYPE  209  326
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  FEMALE           9               209
  MALE             8               326
D4V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  2Q GAIN CNV                                   1                   1
  2Q GAIN WILD-TYPE                             7                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  2Q GAIN CNV                                    15
  2Q GAIN WILD-TYPE                             511
D4V5, multiclass
                                 clus
vv                                2Q GAIN CNV 2Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             1                 7
  TREATED PRIMARY GBM                       1                17
  UNTREATED PRIMARY (DE NOVO) GBM          15               511
D4V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN CNV         14    3
  2Q GAIN WILD-TYPE  367  168
     clus
vv    2Q GAIN CNV 2Q GAIN WILD-TYPE
  NO           14               367
  YES           3               168

Clustering(5) Variable = 3p gain
D5V1, survival
                   sevent
clus2                 0   1
  3P GAIN CNV         8  22
  3P GAIN WILD-TYPE 125 397
      3P GAIN CNV 3P GAIN WILD-TYPE 
               30               522 
      3P GAIN CNV 3P GAIN WILD-TYPE 
               22               397 
$`3P GAIN CNV`
TCGA-02-0001 TCGA-02-0028 TCGA-02-0069 TCGA-02-0332 TCGA-06-0188 TCGA-06-0211 
        9.14        90.58        28.70        25.71        28.47        11.84 
TCGA-06-0410 TCGA-06-0413 TCGA-06-0648 TCGA-06-0686 TCGA-06-1087 TCGA-08-0345 
        4.67         0.16         9.63         9.37         3.58         1.74 
TCGA-08-0346 TCGA-08-0510 TCGA-12-0615 TCGA-12-0822 TCGA-12-0829 TCGA-12-1088 
        4.34         3.48        14.01        23.51        20.58       127.56 
TCGA-12-1602 TCGA-12-3644 TCGA-14-1794 TCGA-14-1825 TCGA-19-4065 TCGA-27-1834 
        6.38        59.41         0.99         7.63         7.04        33.14 
TCGA-28-2506 TCGA-28-5216 TCGA-28-5219 TCGA-32-2632 TCGA-41-3915 TCGA-76-6285 
        6.74        13.64         8.52         8.84         6.02         8.32 

$`3P GAIN WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       42.74        24.59        10.36         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
       15.06        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 
        9.57         6.02        19.73        26.43        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
       10.19        20.84        27.22        89.72        22.72         0.23 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.29         8.81        57.76        16.93         3.48        26.99 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 
       65.00        11.67        17.65        23.15        92.61        99.95 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.90        17.69        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0333 
        9.86         7.69        10.62         0.16        15.91         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.24        16.18         3.35        16.80        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.29        15.42        16.18         2.70         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.31         0.10         3.55        22.72        32.48        10.52 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       18.74        14.07        23.05        22.16        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
        9.21         2.20        11.74         2.33        20.09        16.70 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
        9.80         7.82        19.46        46.59        11.80        12.79 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
        8.65         3.19         5.46         9.44        11.80         2.56 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       56.84        10.65         5.29        19.04         3.12        13.02 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
        0.23         2.20         2.73        51.32         1.97        53.98 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 
       19.00         2.53        40.37        37.02        26.33        14.93 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.29        18.28         4.67         7.04         2.60         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0213 TCGA-06-0214 
        6.44         5.46         3.88         4.96         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 
       22.49         0.33        18.02        10.32        11.80        14.96 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0414 
       10.29         5.52         0.26        70.52         8.05        35.01 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0649 TCGA-06-0650 TCGA-06-0743 
       12.33         3.22         4.47         2.04        23.57        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.53         5.36         2.70         2.14         0.92         9.17 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
        8.91         6.71         7.17        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       20.94         7.43         6.35        26.79         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.58         4.18         1.08         0.76         4.90         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
        2.83         8.52         5.95         6.81         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        0.43         9.37        11.21         3.52         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         6.71         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.12         4.54         3.91         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        0.49         7.36         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 
        4.77         4.96        22.68        34.75         3.91       108.82 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        6.41        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        0.95         9.17        10.85        15.72         3.19        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
        0.30         0.56        11.77         8.52        18.44        58.19 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
        1.28        10.72         4.80         6.51        15.98        17.29 
TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 
        5.52        14.40         1.61        10.39         5.95        10.52 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.10         5.49         9.11        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 
       24.76        18.48        10.62        27.78        38.76         8.91 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         6.21        30.54        21.63        11.97        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       15.85         9.11        14.53         3.98         3.39         9.44 
TCGA-12-1599 TCGA-12-1600 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
       25.28        13.61        43.20        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       11.77        34.52        11.74        13.08         3.22         2.01 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
       15.09        11.97         0.95         6.18        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
       11.24        13.74         3.25         1.35         5.39         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
       16.50        26.33         2.04        28.90        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.02        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       23.11         7.10         1.15        30.15         0.92        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1827 
        6.12        12.43         1.94        17.75        17.82         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 
        7.13        17.49         7.96         3.75         3.39         9.86 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
       19.10        53.19         5.49         3.91         9.93        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       16.31         4.27        29.00         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        3.65        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.43        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 
        5.95        12.95         4.64        25.38         3.48         7.13 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 
        7.53         0.16         4.08        16.47         7.00         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        6.51         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
        9.73        31.33         7.10         9.37         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.84         1.22         1.58         7.92         2.30 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 
        4.80        16.57         9.86        18.25        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.72        10.39        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
        7.59         2.86        14.40        15.75         0.20         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.17         8.32         7.59         8.45         1.18         1.51 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        2.83         0.13         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        3.91         9.04        15.55         2.53        11.77         9.80 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       14.20         7.79         4.21        10.49         5.42        15.35 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.83        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       14.99        15.95         7.33         8.88         7.36        13.15 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.68        12.59        11.70        10.85         5.42         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 
       13.35         8.94         9.53         0.99         4.44         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        17.52         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.46         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       11.38        17.06        20.94         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.24         7.69         7.76         1.61        17.69         0.07 

      3P GAIN CNV 3P GAIN WILD-TYPE 
             0.16              0.07 
      3P GAIN CNV 3P GAIN WILD-TYPE 
           127.56            108.82 
      3P GAIN CNV 3P GAIN WILD-TYPE 
             8.99              9.70 
[1] "0.2 - 127.6 (9.0)" "0.1 - 108.8 (9.7)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
      "3P GAIN CNV"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
      "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"       "3P GAIN CNV" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"3P GAIN WILD-TYPE"       "3P GAIN CNV" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN CNV         12   18
  3P GAIN WILD-TYPE  206  316
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  FEMALE          12               206
  MALE            18               316
D5V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  3P GAIN CNV                                   0                   1
  3P GAIN WILD-TYPE                             8                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  3P GAIN CNV                                    29
  3P GAIN WILD-TYPE                             497
D5V5, multiclass
                                 clus
vv                                3P GAIN CNV 3P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       1                17
  UNTREATED PRIMARY (DE NOVO) GBM          29               497
D5V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN CNV         23    7
  3P GAIN WILD-TYPE  358  164
     clus
vv    3P GAIN CNV 3P GAIN WILD-TYPE
  NO           23               358
  YES           7               164

Clustering(6) Variable = 3q gain
D6V1, survival
                   sevent
clus2                 0   1
  3Q GAIN CNV         9  21
  3Q GAIN WILD-TYPE 124 398
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
               30               522 
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
               21               398 
$`3Q GAIN CNV`
TCGA-02-0001 TCGA-02-0028 TCGA-02-0069 TCGA-02-0332 TCGA-06-0188 TCGA-06-0211 
        9.14        90.58        28.70        25.71        28.47        11.84 
TCGA-06-0410 TCGA-06-0413 TCGA-06-0648 TCGA-06-0686 TCGA-06-1087 TCGA-08-0345 
        4.67         0.16         9.63         9.37         3.58         1.74 
TCGA-08-0346 TCGA-08-0510 TCGA-12-0615 TCGA-12-0829 TCGA-12-1088 TCGA-12-1602 
        4.34         3.48        14.01        20.58       127.56         6.38 
TCGA-12-3644 TCGA-14-1794 TCGA-14-1825 TCGA-14-1829 TCGA-19-4065 TCGA-27-1834 
       59.41         0.99         7.63         7.13         7.04        33.14 
TCGA-28-2506 TCGA-28-5216 TCGA-28-5219 TCGA-32-2632 TCGA-41-3915 TCGA-76-6285 
        6.74        13.64         8.52         8.84         6.02         8.32 

$`3Q GAIN WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       42.74        24.59        10.36         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
       15.06        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 
        9.57         6.02        19.73        26.43        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
       10.19        20.84        27.22        89.72        22.72         0.23 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.29         8.81        57.76        16.93         3.48        26.99 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 
       65.00        11.67        17.65        23.15        92.61        99.95 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.90        17.69        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0333 
        9.86         7.69        10.62         0.16        15.91         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.24        16.18         3.35        16.80        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.29        15.42        16.18         2.70         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.31         0.10         3.55        22.72        32.48        10.52 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       18.74        14.07        23.05        22.16        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
        9.21         2.20        11.74         2.33        20.09        16.70 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
        9.80         7.82        19.46        46.59        11.80        12.79 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
        8.65         3.19         5.46         9.44        11.80         2.56 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       56.84        10.65         5.29        19.04         3.12        13.02 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
        0.23         2.20         2.73        51.32         1.97        53.98 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 
       19.00         2.53        40.37        37.02        26.33        14.93 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.29        18.28         4.67         7.04         2.60         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0213 TCGA-06-0214 
        6.44         5.46         3.88         4.96         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 
       22.49         0.33        18.02        10.32        11.80        14.96 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0414 
       10.29         5.52         0.26        70.52         8.05        35.01 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0649 TCGA-06-0650 TCGA-06-0743 
       12.33         3.22         4.47         2.04        23.57        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.53         5.36         2.70         2.14         0.92         9.17 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
        8.91         6.71         7.17        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       20.94         7.43         6.35        26.79         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.58         4.18         1.08         0.76         4.90         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
        2.83         8.52         5.95         6.81         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        0.43         9.37        11.21         3.52         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         6.71         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.12         4.54         3.91         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        0.49         7.36         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 
        4.77         4.96        22.68        34.75         3.91       108.82 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        6.41        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        0.95         9.17        10.85        15.72         3.19        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
        0.30         0.56        11.77         8.52        18.44        58.19 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
        1.28        10.72         4.80         6.51        15.98        17.29 
TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 
        5.52        14.40         1.61        10.39         5.95        10.52 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.10         5.49         9.11        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.76        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
        8.91         5.82         6.21        30.54        21.63        11.97 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
       11.38        15.85         9.11        14.53         3.98         3.39 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
        9.44        25.28        13.61        43.20        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.95        11.77        34.52        11.74        13.08         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        2.01        15.09        11.97         0.95         6.18        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
        2.24        11.24        13.74         3.25         1.35         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 
        2.89        16.50        26.33         2.04        28.90        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       19.30         0.79         1.38         1.12         3.75        32.02 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
       58.78        23.11         7.10         1.15        30.15         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 
       40.93         6.12        12.43         1.94        17.75        17.82 
TCGA-14-1827 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 
        5.88        17.49         7.96         3.75         3.39         9.86 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
       19.10        53.19         5.49         3.91         9.93        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       16.31         4.27        29.00         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        3.65        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.43        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 
        5.95        12.95         4.64        25.38         3.48         7.13 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 
        7.53         0.16         4.08        16.47         7.00         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        6.51         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
        9.73        31.33         7.10         9.37         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.84         1.22         1.58         7.92         2.30 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 
        4.80        16.57         9.86        18.25        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.72        10.39        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
        7.59         2.86        14.40        15.75         0.20         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.17         8.32         7.59         8.45         1.18         1.51 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        2.83         0.13         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        3.91         9.04        15.55         2.53        11.77         9.80 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       14.20         7.79         4.21        10.49         5.42        15.35 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.83        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       14.99        15.95         7.33         8.88         7.36        13.15 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.68        12.59        11.70        10.85         5.42         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 
       13.35         8.94         9.53         0.99         4.44         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        17.52         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.46         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       11.38        17.06        20.94         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.24         7.69         7.76         1.61        17.69         0.07 

      3Q GAIN CNV 3Q GAIN WILD-TYPE 
             0.16              0.07 
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
           127.56            108.82 
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
            8.680             9.765 
[1] "0.2 - 127.6 (8.7)" "0.1 - 108.8 (9.8)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
      "3Q GAIN CNV"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
      "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"       "3Q GAIN CNV" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"3Q GAIN WILD-TYPE"       "3Q GAIN CNV" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN CNV         12   18
  3Q GAIN WILD-TYPE  206  316
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  FEMALE          12               206
  MALE            18               316
D6V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  3Q GAIN CNV                                   0                   1
  3Q GAIN WILD-TYPE                             8                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  3Q GAIN CNV                                    29
  3Q GAIN WILD-TYPE                             497
D6V5, multiclass
                                 clus
vv                                3Q GAIN CNV 3Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       1                17
  UNTREATED PRIMARY (DE NOVO) GBM          29               497
D6V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN CNV         23    7
  3Q GAIN WILD-TYPE  358  164
     clus
vv    3Q GAIN CNV 3Q GAIN WILD-TYPE
  NO           23               358
  YES           7               164

Clustering(7) Variable = 4p gain
D7V1, survival
                   sevent
clus2                 0   1
  4P GAIN CNV         5  10
  4P GAIN WILD-TYPE 128 409
      4P GAIN CNV 4P GAIN WILD-TYPE 
               15               537 
      4P GAIN CNV 4P GAIN WILD-TYPE 
               10               409 
$`4P GAIN CNV`
TCGA-02-0011 TCGA-02-0069 TCGA-02-0075 TCGA-02-0113 TCGA-06-0174 TCGA-06-0192 
       20.71        28.70        20.84        92.61         2.20        18.28 
TCGA-06-0879 TCGA-06-6697 TCGA-08-0245 TCGA-08-0246 TCGA-08-0510 TCGA-08-0516 
       22.98        12.85        34.75         3.91         3.48        18.44 
TCGA-08-0531 TCGA-14-1453 TCGA-14-1821 
        5.52         1.15        17.75 

$`4P GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 
        8.35         9.57         6.02        19.73        26.43        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
        5.49        10.19        27.22        89.72        22.72         0.23 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.29         8.81        57.76        16.93         3.48        26.99 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 
       65.00        11.67        17.65        23.15        99.95        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 
       48.95        16.54        16.90        17.69        10.75        14.47 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
        3.98        13.87        14.20        15.95        12.23         9.86 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        7.69        10.62         0.16        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.24        16.18         3.35        16.80        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.29        15.42        16.18         2.70         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.31         0.10         3.55        22.72        32.48        10.52 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       18.74        14.07        23.05        22.16        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
        9.21         2.20        11.74         2.33        20.09        16.70 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
        9.80         7.82        19.46        46.59        11.80        12.79 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
        8.65         3.19         5.46         9.44        11.80         2.56 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       56.84        10.65         5.29        19.04         3.12        13.02 
TCGA-06-0173 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        0.23         2.73        51.32         1.97        53.98        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        2.53        40.37        37.02        26.33        28.47        14.93 
TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       10.29         4.67         7.04         2.60         0.39         6.44 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        5.46         3.88         4.96        11.84         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 
       22.49         0.33        18.02        10.32        11.80        14.96 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
       10.29         5.52         0.26        70.52         4.67         8.05 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        0.16        35.01        12.33         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.04        23.57         9.37        22.29        19.53         5.36 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.14         0.92         9.17         8.91         6.71 
TCGA-06-0878 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
        7.17         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        3.58        26.79         8.65         7.86        13.58         4.18 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08         0.76         4.90         9.27         2.83         8.52 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95         6.81         5.98         4.37         0.43         9.37 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.21         3.52         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         6.71         2.73         3.75         6.12         4.54 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        3.91         7.76         5.36         1.45         0.49         7.36 
TCGA-06-6695 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 
        8.28         4.77         1.55         4.77         4.96        22.68 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      108.82         1.74         4.34        13.78        10.39         7.59 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
        3.39        53.79         1.28         6.41        15.06        22.52 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       14.70        35.64        19.50         0.95         9.17        10.85 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 
       15.72         3.19        10.59         0.30         0.56        11.77 
TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
        8.52        58.19         1.28        10.72         4.80         6.51 
TCGA-08-0525 TCGA-08-0529 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       15.98        17.29        14.01        14.40         1.61        10.39 
TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
        5.95        10.52         7.17        65.88         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        24.13         6.08         2.63        18.08        28.37 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       12.43        53.10        43.10         5.49         9.11        14.83 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.27        91.73        24.76        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       27.78        38.76         8.91        20.58       127.56         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        6.21        30.54        21.63        11.97        11.38        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 
        9.11        14.53         3.98         3.39         9.44        25.28 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       13.61         6.38        59.41        43.20        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.95        11.77        34.52        11.74        13.08         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        2.01        15.09        11.97         0.95         6.18        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
        2.24        11.24        13.74         3.25         1.35         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 
        2.89        16.50        26.33         2.04        28.90        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       19.30         0.79         1.38         1.12         3.75        32.02 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       58.78        23.11         7.10        30.15         0.92        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 
        6.12        12.43         0.99         1.94        17.82         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 
        5.88         7.13        17.49         7.96         3.75         3.39 
TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 
        9.86        19.10        53.19         5.49         3.91         9.93 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
       26.07        16.31         4.27        29.00         0.82         9.90 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       13.35         3.65        18.28        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       21.86         8.61         0.43        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 
        9.07         5.95        12.95         4.64        25.38         3.48 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        7.13        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        16.47         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        11.28         8.02        18.64         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        7.96         1.78         6.51         5.39         5.29         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
       10.03        13.87         9.73        31.33         7.10         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.84         1.22         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       10.39        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.75         0.20         2.53         9.17         8.32         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.45         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        6.74         4.77         7.30         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.55         2.53        11.77         9.80        14.20         7.79 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         4.21         8.52        10.49         5.42        15.35 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.83        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       14.99        15.95         7.33         8.84         8.88         7.36 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       13.15         3.68        12.59        11.70        10.85         5.42 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
        6.02         0.20        11.54         7.73         3.45        17.52 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        4.31        14.33         8.22         7.46         4.77         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.09         3.65         9.14         2.53        10.78        16.67 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.32        20.94 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03         0.23         9.24         7.69         7.76 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.69         0.07 

      4P GAIN CNV 4P GAIN WILD-TYPE 
             1.15              0.07 
      4P GAIN CNV 4P GAIN WILD-TYPE 
            92.61            127.56 
      4P GAIN CNV 4P GAIN WILD-TYPE 
            18.28              9.44 
[1] "1.1 - 92.6 (18.3)" "0.1 - 127.6 (9.4)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
      "4P GAIN CNV"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
      "4P GAIN CNV"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
      "4P GAIN CNV"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
      "4P GAIN CNV" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"       "4P GAIN CNV" "4P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN CNV          5   10
  4P GAIN WILD-TYPE  213  324
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  FEMALE           5               213
  MALE            10               324
D7V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  4P GAIN CNV                                   0                   1
  4P GAIN WILD-TYPE                             8                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  4P GAIN CNV                                    14
  4P GAIN WILD-TYPE                             512
D7V5, multiclass
                                 clus
vv                                4P GAIN CNV 4P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       1                17
  UNTREATED PRIMARY (DE NOVO) GBM          14               512
D7V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN CNV         14    1
  4P GAIN WILD-TYPE  367  170
     clus
vv    4P GAIN CNV 4P GAIN WILD-TYPE
  NO           14               367
  YES           1               170

Clustering(8) Variable = 4q gain
D8V1, survival
                   sevent
clus2                 0   1
  4Q GAIN CNV         7   7
  4Q GAIN WILD-TYPE 126 412
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
               14               538 
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                7               412 
$`4Q GAIN CNV`
TCGA-02-0069 TCGA-02-0075 TCGA-02-0113 TCGA-06-0174 TCGA-06-0192 TCGA-06-0879 
       28.70        20.84        92.61         2.20        18.28        22.98 
TCGA-06-6697 TCGA-08-0245 TCGA-08-0246 TCGA-08-0510 TCGA-08-0516 TCGA-08-0531 
       12.85        34.75         3.91         3.48        18.44         5.52 
TCGA-19-0960 TCGA-19-5956 
        8.61         6.51 

$`4Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.70         3.19        15.06        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
       25.05         5.49        10.19        27.22        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
        0.23        51.29         8.81        57.76        16.93         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 
       26.99        65.00        11.67        17.65        23.15        99.95 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.90        17.69        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.86         7.69        10.62         0.16        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.24        16.18         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.29        15.42        16.18         2.70         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
        4.04        47.31         0.10         3.55        22.72        32.48 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       10.52        18.74        14.07        23.05        22.16        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20         9.21         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       16.70         9.80         7.82        19.46        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.79         8.65         3.19         5.46         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        2.56        56.84        10.65         5.29        19.04         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
       13.02         0.23         2.73        51.32         1.97        53.98 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
       19.00         2.53        40.37        37.02        26.33        28.47 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       14.93        10.29         4.67         7.04         2.60         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        6.44         5.46         3.88         4.96        11.84         0.20 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
       12.43        22.49         0.33        18.02        10.32        11.80 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       14.96        10.29         5.52         0.26        70.52         4.67 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        8.05         0.16        35.01        12.33         3.22         4.47 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.63         2.04        23.57         9.37        22.29        19.53 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        5.36         2.70         2.14         0.92         9.17         8.91 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        6.71         7.17         5.85         5.42        20.94         7.43 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        6.35         3.58        26.79         8.65         7.86        13.58 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
        4.18         1.08         0.76         4.90         9.27         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
        8.52         5.95         6.81         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        9.37        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         6.71         2.73         3.75         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        7.36         8.28         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
       22.68       108.82         1.74         4.34        13.78        10.39 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
        7.59         3.39        53.79         1.28         6.41        15.06 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       22.52        14.70        35.64        19.50         0.95         9.17 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       10.85        15.72         3.19        10.59         0.30         0.56 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
       11.77         8.52        58.19         1.28        10.72         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
        6.51        15.98        17.29        14.01        14.40         1.61 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       10.39         5.95        10.52         7.17        65.88         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        24.13         6.08         2.63        18.08 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.37        12.43        53.10        43.10         5.49         9.11 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.83        14.27        91.73        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.91        20.58       127.56 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         6.21        30.54        21.63        11.97        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       15.85         9.11        14.53         3.98         3.39         9.44 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.28        13.61         6.38        59.41        43.20        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       11.54        10.95        11.77        34.52        11.74        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.01        15.09        11.97         0.95         6.18 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.74         3.25         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
        5.39         2.89        16.50        26.33         2.04        28.90 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.02        58.78        23.11         7.10         1.15        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.93         6.12        12.43         0.99         1.94 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.75        17.82         7.63         5.88         7.13        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 
        7.96         3.75         3.39         9.86        19.10        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 
        5.49         3.91         9.93        26.07        16.31         4.27 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.00         0.82         9.90        13.35         3.65        18.28 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-0963 
       13.97         6.41        11.77        21.86         0.43        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 
        3.39        10.75         9.07         5.95        12.95         4.64 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
       25.38         3.48         7.13        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       16.47         7.00         7.04         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.64         4.73         7.96         1.78         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
        5.42        10.03        13.87         9.73        31.33         7.10 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        9.37         9.40        14.86         5.49         8.84         1.22 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.30         4.80        16.57         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       18.25        33.14        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.72        10.39        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.75         0.20         2.53         9.17         8.32 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.59         8.45         1.18         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        0.66         6.74         4.77         7.30         5.26         3.91 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
        9.04        15.55         2.53        11.77         9.80        14.20 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
        7.79        13.64         4.21         8.52        10.49         5.42 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
       15.35        21.07         0.49         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        1.18         4.67        12.69        14.83        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 
       20.78        14.99        15.95         7.33         8.84         8.88 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
        7.36        13.15         3.68        12.59        11.70        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
        5.42         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44         6.02         0.20        11.54         7.73         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
       17.52         4.31        14.33         8.22         7.46         4.77 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 
        4.54         3.09         3.65         9.14         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.67         3.29         2.70        11.38        17.06         8.32 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.94         4.83         5.03         0.23         9.24         7.69 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.76         1.61        17.69         0.07 

      4Q GAIN CNV 4Q GAIN WILD-TYPE 
             2.20              0.07 
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
            92.61            127.56 
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
           15.565             9.485 
[1] "2.2 - 92.6 (15.6)" "0.1 - 127.6 (9.5)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
      "4Q GAIN CNV"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
      "4Q GAIN CNV"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
      "4Q GAIN CNV"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
      "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"4Q GAIN WILD-TYPE"       "4Q GAIN CNV" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
[1] "hr=" "2.2"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN CNV          6    8
  4Q GAIN WILD-TYPE  212  326
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  FEMALE           6               212
  MALE             8               326
D8V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  4Q GAIN CNV                                   0                   1
  4Q GAIN WILD-TYPE                             8                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  4Q GAIN CNV                                    13
  4Q GAIN WILD-TYPE                             513
D8V5, multiclass
                                 clus
vv                                4Q GAIN CNV 4Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       1                17
  UNTREATED PRIMARY (DE NOVO) GBM          13               513
D8V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN CNV         14    0
  4Q GAIN WILD-TYPE  367  171
     clus
vv    4Q GAIN CNV 4Q GAIN WILD-TYPE
  NO           14               367
  YES           0               171

Clustering(9) Variable = 5p gain
D9V1, survival
                   sevent
clus2                 0   1
  5P GAIN CNV         4  25
  5P GAIN WILD-TYPE 129 394
      5P GAIN CNV 5P GAIN WILD-TYPE 
               29               523 
      5P GAIN CNV 5P GAIN WILD-TYPE 
               25               394 
$`5P GAIN CNV`
TCGA-02-0024 TCGA-02-0028 TCGA-02-0051 TCGA-02-0086 TCGA-02-0113 TCGA-06-0151 
       53.06        90.58        15.06         8.81        92.61        46.59 
TCGA-06-0195 TCGA-06-0209 TCGA-06-0397 TCGA-06-0409 TCGA-06-0645 TCGA-08-0350 
        7.04         3.88         5.52        70.52         3.22         3.39 
TCGA-08-0510 TCGA-08-0518 TCGA-08-0524 TCGA-12-0691 TCGA-12-0778 TCGA-12-1098 
        3.48         1.28         6.51         6.08        14.83         3.98 
TCGA-12-1602 TCGA-14-1396 TCGA-14-1823 TCGA-19-0955 TCGA-19-1787 TCGA-28-2506 
        6.38         1.12        17.82        11.77        12.66         6.74 
TCGA-28-5216 TCGA-32-1973 TCGA-32-2495 TCGA-32-2616 TCGA-32-2632 
       13.64        21.07        14.99         7.33         8.84 

$`5P GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       42.74        24.59        10.36         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       12.59         6.54         2.50        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        6.02        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
       10.19        20.84        27.22        89.72        22.72         0.23 
TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
       51.29        57.76        16.93         3.48        26.99        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
       11.67        17.65        23.15        99.95        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
       16.54        16.90        17.69        10.75        14.47         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.86         7.69 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       10.62         0.16        15.91        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
        9.24        16.18         3.35        16.80        12.92        15.29 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.42        16.18         2.70         0.26         4.04        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
        0.10         3.55        22.72        32.48        10.52        18.74 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.07        23.05        22.16        10.75         0.20         9.21 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        16.70         9.80 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        7.82        19.46        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
        5.46         9.44        11.80         2.56        56.84        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.29        19.04         3.12        13.02         0.23         2.20 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        2.73        51.32         1.97        53.98        19.00         2.53 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       40.37        37.02        26.33        28.47        14.93        10.29 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
       18.28         4.67         2.60         0.39         6.44         5.46 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        4.96        11.84         0.20        12.43        22.49         0.33 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0402 
       18.02        10.32        11.80        14.96        10.29         0.26 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0646 
        4.67         8.05         0.16        35.01        12.33         4.47 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.63         2.04        23.57         9.37        22.29        19.53 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        5.36         2.70         2.14         0.92         9.17         8.91 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        6.71         7.17        22.98         5.85         5.42        20.94 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
        7.43         6.35         3.58        26.79         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.58         4.18         1.08         0.76         4.90         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
        2.83         8.52         5.95         6.81         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        0.43         9.37        11.21         3.52         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         6.71         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.12         4.54         3.91         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        0.49         7.36         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 
        4.77         4.96        22.68        34.75         3.91       108.82 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0351 
        1.74         4.34        13.78        10.39         7.59        53.79 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       19.50         0.95         9.17        10.85        15.72         3.19 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
       10.59         0.30         0.56        11.77         8.52        18.44 
TCGA-08-0517 TCGA-08-0520 TCGA-08-0521 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       58.19        10.72         4.80        15.98        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 
       14.01        14.40         1.61        10.39         5.95        10.52 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        2.63        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        5.49         9.11        14.27        91.73        24.76        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       10.62        23.51        27.78        38.76         8.91        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
      127.56         5.82         6.21        30.54        21.63        11.97 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 TCGA-12-1598 
       11.38        15.85         9.11        14.53         3.39         9.44 
TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       25.28        13.61        59.41        43.20        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.95        11.77        34.52        11.74        13.08         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        2.01        15.09        11.97         0.95         6.18        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
        2.24        11.24        13.74         3.25         1.35         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 
        2.89        16.50        26.33         2.04        28.90        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
       19.30         0.79         1.38         3.75        32.02        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       23.11         7.10         1.15        30.15         0.92        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 
        6.12        12.43         0.99         1.94        17.75         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 
        5.88         7.13        17.49         7.96         3.75         3.39 
TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 
        9.86        19.10        53.19         5.49         3.91         9.93 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
       26.07        16.31         4.27        29.00         0.82         9.90 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0957 
       13.35         3.65        18.28        13.97         6.41        21.86 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.43        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 
        5.95        12.95         4.64        25.38         3.48         7.13 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        0.16         4.08        16.47         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        6.51         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
        9.73        31.33         7.10         9.37         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.84         1.22         1.58         7.92         2.30 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        4.80        16.57         9.86        18.25        33.14        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.72        10.39        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.17         8.32         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 
        1.51         2.83         0.13         0.66         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26         3.91         9.04        15.55         2.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
        9.80        14.20         7.79         4.21         8.52        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
        5.42        15.35         0.49         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        1.18         4.67        12.69        14.83        16.93        12.23 
TCGA-32-2494 TCGA-32-2615 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
       20.78        15.95         8.88         7.36        13.15         3.68 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        11.70        10.85         5.42         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44         6.02         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        17.52         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.46         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.32        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

      5P GAIN CNV 5P GAIN WILD-TYPE 
             1.12              0.07 
      5P GAIN CNV 5P GAIN WILD-TYPE 
            92.61            127.56 
      5P GAIN CNV 5P GAIN WILD-TYPE 
             8.81              9.63 
[1] "1.1 - 92.6 (8.8)"  "0.1 - 127.6 (9.6)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"5P GAIN WILD-TYPE"       "5P GAIN CNV" "5P GAIN WILD-TYPE"       "5P GAIN CNV" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
      "5P GAIN CNV" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN CNV         13   16
  5P GAIN WILD-TYPE  205  318
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  FEMALE          13               205
  MALE            16               318
D9V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  5P GAIN CNV                                   1                   4
  5P GAIN WILD-TYPE                             7                  14
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  5P GAIN CNV                                    24
  5P GAIN WILD-TYPE                             502
D9V5, multiclass
                                 clus
vv                                5P GAIN CNV 5P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             1                 7
  TREATED PRIMARY GBM                       4                14
  UNTREATED PRIMARY (DE NOVO) GBM          24               502
D9V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN CNV         24    5
  5P GAIN WILD-TYPE  357  166
     clus
vv    5P GAIN CNV 5P GAIN WILD-TYPE
  NO           24               357
  YES           5               166

Clustering(10) Variable = 5q gain
D10V1, survival
                   sevent
clus2                 0   1
  5Q GAIN CNV         4  18
  5Q GAIN WILD-TYPE 129 401
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               22               530 
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               18               401 
$`5Q GAIN CNV`
TCGA-02-0028 TCGA-02-0086 TCGA-02-0113 TCGA-06-0151 TCGA-06-0195 TCGA-06-0209 
       90.58         8.81        92.61        46.59         7.04         3.88 
TCGA-06-0397 TCGA-06-0409 TCGA-06-0645 TCGA-08-0510 TCGA-08-0518 TCGA-12-0778 
        5.52        70.52         3.22         3.48         1.28        14.83 
TCGA-12-1098 TCGA-12-1602 TCGA-14-1396 TCGA-14-1823 TCGA-19-0955 TCGA-19-1787 
        3.98         6.38         1.12        17.82        11.77        12.66 
TCGA-28-2506 TCGA-28-5216 TCGA-32-2495 TCGA-32-2632 
        6.74        13.64        14.99         8.84 

$`5Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 
       53.06        42.74        24.59        10.36         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
       22.72         0.23        51.29        57.76        16.93         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 
       26.99        65.00        11.67        17.65        23.15        99.95 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.90        17.69        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.86         7.69        10.62         0.16        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.24        16.18         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.29        15.42        16.18         2.70         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
        4.04        47.31         0.10         3.55        22.72        32.48 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       10.52        18.74        14.07        23.05        22.16        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20         9.21         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 
       16.70         9.80         7.82        19.46        11.80        12.79 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
        8.65         3.19         5.46         9.44        11.80         2.56 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       56.84        10.65         5.29        19.04         3.12        13.02 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
        0.23         2.20         2.73        51.32         1.97        53.98 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
       19.00         2.53        40.37        37.02        26.33        28.47 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 
       14.93        10.29        18.28         4.67         2.60         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        6.44         5.46         4.96        11.84         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 
       22.49         0.33        18.02        10.32        11.80        14.96 
TCGA-06-0394 TCGA-06-0402 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
       10.29         0.26         4.67         8.05         0.16        35.01 
TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
       12.33         4.47         9.63         2.04        23.57         9.37 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       22.29        19.53         5.36         2.70         2.14         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        9.17         8.91         6.71         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 
        5.42        20.94         7.43         6.35         3.58        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
        8.65         7.86        13.58         4.18         1.08         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.90         9.27         2.83         8.52         5.95         6.81 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        5.98         4.37         0.43         9.37        11.21         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.12         4.54         3.91         7.76 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.36         1.45         0.49         7.36         8.28        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 
        4.77         1.55         4.77         4.96        22.68        34.75 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
        3.91       108.82         1.74         4.34        13.78        10.39 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
        7.59         3.39        53.79         1.28         6.41        15.06 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       22.52        14.70        35.64        19.50         0.95         9.17 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       10.85        15.72         3.19        10.59         0.30         0.56 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0520 TCGA-08-0521 
       11.77         8.52        18.44        58.19        10.72         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 
        6.51        15.98        17.29         5.52        14.01        14.40 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 
        1.61        10.39         5.95        10.52         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        24.13         6.08         2.63 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       18.08        28.37        12.43        53.10        43.10         5.49 
TCGA-12-0776 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
        9.11        14.27        91.73        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.91        20.58       127.56 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         6.21        30.54        21.63        11.97        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 
       15.85         9.11        14.53         3.39         9.44        25.28 
TCGA-12-1600 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
       13.61        59.41        43.20        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       11.77        34.52        11.74        13.08         3.22         2.01 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
       15.09        11.97         0.95         6.18        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
       11.24        13.74         3.25         1.35         5.39         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
       16.50        26.33         2.04        28.90        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        0.79         1.38         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 
       12.43         0.99         1.94        17.75         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 
        7.13        17.49         7.96         3.75         3.39         9.86 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
       19.10        53.19         5.49         3.91         9.93        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       16.31         4.27        29.00         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0957 TCGA-19-0960 
        3.65        18.28        13.97         6.41        21.86         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 
       12.95         4.64        25.38         3.48         7.13         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        4.08        16.47         7.00         7.04         6.64        11.28 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.64         4.73         7.96         1.78         6.51 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
        5.39         5.29         5.42        10.03        13.87         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       31.33         7.10         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.84         1.22         1.58         7.92         2.30         4.80 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.57         9.86        18.25        33.14        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.72        10.39        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
        7.59         2.86        14.40        15.75         0.20         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.17         8.32         7.59         8.45         1.18         1.51 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        2.83         0.13         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        3.91         9.04        15.55         2.53        11.77         9.80 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       14.20         7.79         4.21         8.52        10.49         5.42 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
       15.35        21.07         0.49         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        1.18         4.67        12.69        14.83        16.93        12.23 
TCGA-32-2494 TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       20.78        15.95         7.33         8.88         7.36        13.15 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.68        12.59        11.70        10.85         5.42         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44         6.02 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        11.54         7.73         3.45        17.52         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.46         4.77         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.14         2.53        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.32        20.94         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

      5Q GAIN CNV 5Q GAIN WILD-TYPE 
             1.12              0.07 
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
            92.61            127.56 
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
            8.825             9.600 
[1] "1.1 - 92.6 (8.8)"  "0.1 - 127.6 (9.6)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"       "5Q GAIN CNV" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"5Q GAIN WILD-TYPE"       "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
      "5Q GAIN CNV" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN CNV         11   11
  5Q GAIN WILD-TYPE  207  323
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  FEMALE          11               207
  MALE            11               323
D10V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  5Q GAIN CNV                                   1                   3
  5Q GAIN WILD-TYPE                             7                  15
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  5Q GAIN CNV                                    18
  5Q GAIN WILD-TYPE                             508
D10V5, multiclass
                                 clus
vv                                5Q GAIN CNV 5Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             1                 7
  TREATED PRIMARY GBM                       3                15
  UNTREATED PRIMARY (DE NOVO) GBM          18               508
D10V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN CNV         18    4
  5Q GAIN WILD-TYPE  363  167
     clus
vv    5Q GAIN CNV 5Q GAIN WILD-TYPE
  NO           18               363
  YES           4               167

Clustering(11) Variable = 6p gain
D11V1, survival
                   sevent
clus2                 0   1
  6P GAIN CNV         3   4
  6P GAIN WILD-TYPE 130 415
      6P GAIN CNV 6P GAIN WILD-TYPE 
                7               545 
      6P GAIN CNV 6P GAIN WILD-TYPE 
                4               415 
$`6P GAIN CNV`
TCGA-02-0069 TCGA-06-0410 TCGA-08-0516 TCGA-12-0776 TCGA-12-1092 TCGA-15-1447 
       28.70         4.67        18.44         9.11        21.63        53.19 
TCGA-81-5911 
       17.69 

$`6P GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.70         3.19        15.06        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.29        15.42        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        32.48        10.52        18.74        14.07        23.05 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       22.16        10.75         0.20         9.21         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        16.70         9.80         7.82        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       46.59        11.80        12.79         8.65         3.19         5.46 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         2.56        56.84        10.65         5.29 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.04         3.12        13.02         0.23         2.20         2.73 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       51.32         1.97        53.98        19.00         2.53        40.37 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       37.02        26.33        28.47        14.93        10.29        18.28 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.04         2.60         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        3.88         4.96        11.84         0.20        12.43        22.49 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 
        0.33        18.02        10.32        11.80        14.96        10.29 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
        5.52         0.26        70.52         8.05         0.16        35.01 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.33         3.22         4.47         9.63         2.04        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        9.37        22.29        19.53         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92         9.17         8.91         6.71         7.17        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
        5.85         5.42        20.94         7.43         6.35         3.58 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
       26.79         8.65         7.86        13.58         4.18         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        0.76         4.90         9.27         2.83         8.52         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        6.81         5.98         4.37         0.43         9.37        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.52         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.12         4.54         3.91 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.76         5.36         1.45         0.49         7.36         8.28 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 
       12.85         4.77         1.55         4.77         4.96        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       34.75         3.91       108.82         1.74         4.34        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       10.39         7.59         3.39        53.79         1.28         6.41 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        9.17        10.85        15.72         3.19        10.59         0.30 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 
        0.56         3.48        11.77         8.52        58.19         1.28 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.72         4.80         6.51        15.98        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 
       14.01        14.40         1.61        10.39         5.95        10.52 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
       43.10         5.49        14.83        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 
       18.48        10.62        23.51        27.78        38.76         8.91 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 
       20.58       127.56         5.82         6.21        30.54        11.97 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
       11.38        15.85         9.11        14.53         3.98         3.39 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
        9.44        25.28        13.61         6.38        59.41        43.20 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       25.78        11.54        10.95        11.77        34.52        11.74 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 
       13.08         3.22         2.01        15.09        11.97         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 
        6.18        23.05         2.24        11.24        13.74         3.25 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 
        1.35         5.39         2.89        16.50        26.33         2.04 
TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
       28.90        15.95        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.02        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
       30.15         0.92        40.93         6.12        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        1.94        17.75        17.82         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 
       17.49         7.96         3.75         3.39         9.86        19.10 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 
        5.49         3.91         9.93        26.07        16.31         4.27 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.00         0.82         9.90        13.35         3.65        18.28 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 
       13.97         6.41        11.77        21.86         8.61         0.43 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 
       14.27         3.39        10.75         9.07         5.95        12.95 
TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
        4.64        25.38         3.48         7.13        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        4.08        16.47         7.00         7.04         6.64        11.28 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.64         4.73         7.96         1.78         6.51 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
        5.39         5.29         5.42        10.03        13.87         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       31.33         7.10         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.84         1.22         1.58         7.92         2.30         4.80 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.57         9.86        18.25        33.14        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.72        10.39        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
        7.59         2.86        14.40        15.75         0.20         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.17         8.32         7.59         8.45         1.18         1.51 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 
        2.83         0.13         0.66         6.74         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26         3.91         9.04        15.55         2.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
        9.80        14.20         7.79        13.64         4.21         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
       10.49         5.42        15.35        21.07         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.83 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 
       16.93        12.23        20.78        14.99        15.95         7.33 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
        8.84         8.88         7.36        13.15         3.68        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       11.70        10.85         5.42         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44         6.02         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        7.73         3.45        17.52         4.31        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.46         4.77         4.54         3.09         3.65         9.14 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        10.78        16.67         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.32        20.94         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-87-5896 
        9.24         7.69         7.76         1.61         0.07 

      6P GAIN CNV 6P GAIN WILD-TYPE 
             4.67              0.07 
      6P GAIN CNV 6P GAIN WILD-TYPE 
            53.19            127.56 
      6P GAIN CNV 6P GAIN WILD-TYPE 
            18.44              9.44 
[1] "4.7 - 53.2 (18.4)" "0.1 - 127.6 (9.4)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"       "6P GAIN CNV" "6P GAIN WILD-TYPE" 
[1] "hr=" "2.2"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN CNV          3    4
  6P GAIN WILD-TYPE  215  330
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  FEMALE           3               215
  MALE             4               330
D11V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  6P GAIN CNV                                   0                   0
  6P GAIN WILD-TYPE                             8                  18
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  6P GAIN CNV                                     7
  6P GAIN WILD-TYPE                             519
D11V5, multiclass
                                 clus
vv                                6P GAIN CNV 6P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       0                18
  UNTREATED PRIMARY (DE NOVO) GBM           7               519
D11V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN CNV          6    1
  6P GAIN WILD-TYPE  375  170
     clus
vv    6P GAIN CNV 6P GAIN WILD-TYPE
  NO            6               375
  YES           1               170

Clustering(12) Variable = 6q gain
D12V1, survival
                   sevent
clus2                 0   1
  6Q GAIN CNV         4   5
  6Q GAIN WILD-TYPE 129 414
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
                9               543 
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
                5               414 
$`6Q GAIN CNV`
TCGA-02-0069 TCGA-06-0410 TCGA-06-2569 TCGA-08-0516 TCGA-12-0776 TCGA-12-1092 
       28.70         4.67         0.43        18.44         9.11        21.63 
TCGA-15-1447 TCGA-19-1388 TCGA-81-5911 
       53.19        12.95        17.69 

$`6Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.70         3.19        15.06        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.29        15.42        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        32.48        10.52        18.74        14.07        23.05 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       22.16        10.75         0.20         9.21         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        16.70         9.80         7.82        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       46.59        11.80        12.79         8.65         3.19         5.46 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         2.56        56.84        10.65         5.29 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.04         3.12        13.02         0.23         2.20         2.73 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       51.32         1.97        53.98        19.00         2.53        40.37 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       37.02        26.33        28.47        14.93        10.29        18.28 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.04         2.60         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        3.88         4.96        11.84         0.20        12.43        22.49 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 
        0.33        18.02        10.32        11.80        14.96        10.29 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
        5.52         0.26        70.52         8.05         0.16        35.01 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.33         3.22         4.47         9.63         2.04        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        9.37        22.29        19.53         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92         9.17         8.91         6.71         7.17        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
        5.85         5.42        20.94         7.43         6.35         3.58 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
       26.79         8.65         7.86        13.58         4.18         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        0.76         4.90         9.27         2.83         8.52         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        6.81         5.98         4.37         9.37        11.21         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.12         4.54         3.91         7.76 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.36         1.45         0.49         7.36         8.28        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 
        4.77         1.55         4.77         4.96        22.68        34.75 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
        3.91       108.82         1.74         4.34        13.78        10.39 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
        7.59         3.39        53.79         1.28         6.41        15.06 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       22.52        14.70        35.64        19.50         0.95         9.17 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       10.85        15.72         3.19        10.59         0.30         0.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
        3.48        11.77         8.52        58.19         1.28        10.72 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         6.51        15.98        17.29         5.52        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 
       14.40         1.61        10.39         5.95        10.52         7.17 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       65.88         0.10        38.17        25.97        24.13         6.08 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        2.63        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        5.49        14.83        14.27        91.73        24.76        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       10.62        23.51        27.78        38.76         8.91        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 
      127.56         5.82         6.21        30.54        11.97        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       15.85         9.11        14.53         3.98         3.39         9.44 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.28        13.61         6.38        59.41        43.20        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       11.54        10.95        11.77        34.52        11.74        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.01        15.09        11.97         0.95         6.18 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.74         3.25         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
        5.39         2.89        16.50        26.33         2.04        28.90 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.02        58.78        23.11         7.10         1.15        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.93         6.12        12.43         0.99         1.94 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.75        17.82         7.63         5.88         7.13        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 
        7.96         3.75         3.39         9.86        19.10         5.49 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 
        3.91         9.93        26.07        16.31         4.27        29.00 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        0.82         9.90        13.35         3.65        18.28        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
        6.41        11.77        21.86         8.61         0.43        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 
        3.39        10.75         9.07         5.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.48         7.13        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        16.47 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73         7.96         1.78         6.51         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
        5.42        10.03        13.87         9.73        31.33         7.10 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        9.37         9.40        14.86         5.49         8.84         1.22 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.30         4.80        16.57         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       18.25        33.14        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.72        10.39        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.75         0.20         2.53         9.17         8.32 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.59         8.45         1.18         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        0.66         6.74         4.77         7.30         5.26         3.91 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
        9.04        15.55         2.53        11.77         9.80        14.20 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
        7.79        13.64         4.21         8.52        10.49         5.42 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
       15.35        21.07         0.49         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        1.18         4.67        12.69        14.83        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 
       20.78        14.99        15.95         7.33         8.84         8.88 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
        7.36        13.15         3.68        12.59        11.70        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
        5.42         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44         6.02         0.20        11.54         7.73         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
       17.52         4.31        14.33         8.22         7.46         4.77 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 
        4.54         3.09         3.65         9.14         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.67         3.29         2.70        11.38        17.06         8.32 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.94         4.83         5.03         0.23         9.24         7.69 
TCGA-76-6664 TCGA-81-5910 TCGA-87-5896 
        7.76         1.61         0.07 

      6Q GAIN CNV 6Q GAIN WILD-TYPE 
             0.43              0.07 
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
            53.19            127.56 
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
            17.69              9.44 
[1] "0.4 - 53.2 (17.7)" "0.1 - 127.6 (9.4)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"       "6Q GAIN CNV" "6Q GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN CNV          4    5
  6Q GAIN WILD-TYPE  214  329
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  FEMALE           4               214
  MALE             5               329
D12V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  6Q GAIN CNV                                   0                   0
  6Q GAIN WILD-TYPE                             8                  18
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  6Q GAIN CNV                                     9
  6Q GAIN WILD-TYPE                             517
D12V5, multiclass
                                 clus
vv                                6Q GAIN CNV 6Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       0                18
  UNTREATED PRIMARY (DE NOVO) GBM           9               517
D12V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN CNV          7    2
  6Q GAIN WILD-TYPE  374  169
     clus
vv    6Q GAIN CNV 6Q GAIN WILD-TYPE
  NO            7               374
  YES           2               169

Clustering(13) Variable = 7p gain
D13V1, survival
                   sevent
clus2                 0   1
  7P GAIN CNV       103 324
  7P GAIN WILD-TYPE  30  95
      7P GAIN CNV 7P GAIN WILD-TYPE 
              427               125 
      7P GAIN CNV 7P GAIN WILD-TYPE 
              324                95 
$`7P GAIN CNV`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0016 
        9.14         4.73        18.35        23.18        10.59        55.86 
TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 
       77.62        20.12        42.74        10.36         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0051 TCGA-02-0052 
        3.58        10.72        18.28         6.84        15.06        12.59 
TCGA-02-0054 TCGA-02-0057 TCGA-02-0059 TCGA-02-0064 TCGA-02-0070 TCGA-02-0071 
        6.54        19.86         9.57        19.73        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 
       10.19        20.84        27.22        22.72        51.29         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 TCGA-02-0111 
       57.76        16.93         3.48        26.99        11.67        23.15 
TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       92.61        15.65        48.95        16.90        17.69        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.86         7.69        10.62         0.16        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
        4.37        25.12        10.55        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0122 
        3.35        16.80        12.92        15.42        16.18         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0130 TCGA-06-0133 TCGA-06-0137 
        4.04        47.31         0.10        10.52        14.07        23.05 
TCGA-06-0138 TCGA-06-0140 TCGA-06-0143 TCGA-06-0145 TCGA-06-0148 TCGA-06-0149 
       22.16         0.20        11.74         2.33         9.80         7.82 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        5.46         9.44        56.84         5.29        19.04         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       13.02         0.23         2.20         2.73        51.32         1.97 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0190 
       19.00         2.53        40.37        37.02        28.47        10.29 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       18.28         4.67         7.04         2.60         0.39         6.44 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        5.46         3.88         4.96        11.84         0.20        12.43 
TCGA-06-0216 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       22.49        10.32        11.80        14.96        10.29         5.52 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 
        0.26        70.52         8.05         0.16        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        4.47         9.63         2.04         9.37        22.29        19.53 
TCGA-06-0745 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        5.36         2.14         0.92         9.17         8.91         6.71 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
        7.17        22.98         5.42        20.94         7.43         6.35 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-2558 
        3.58        26.79         8.65         7.86        13.58         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2567 
        4.90         9.27         2.83         8.52         5.95         4.37 
TCGA-06-5408 TCGA-06-5411 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 
       11.21         8.35         8.81         8.98         8.55         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 
        3.75         6.12         4.54         3.91         5.36         1.45 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-08-0244 
        7.36         8.28        12.85         4.77         1.55        22.68 
TCGA-08-0245 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
       34.75         1.74         4.34        13.78        10.39         7.59 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       19.50         0.95         9.17        10.85        15.72         3.19 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0518 TCGA-08-0520 
       10.59         0.30         0.56         3.48         1.28        10.72 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       15.98        17.29         5.52        14.40         1.61        10.39 
TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
        5.95        10.52         7.17        65.88         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        24.13         6.08         2.63        18.08        28.37 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       12.43        53.10        43.10         5.49         9.11        14.83 
TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       14.27        24.76        18.48        10.62        23.51        27.78 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.91        20.58       127.56         5.82         6.21        30.54 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.63        11.97        11.38        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
        3.98         3.39         9.44        25.28        13.61         6.38 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.41        43.20        25.78        11.54        10.95        11.77 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       34.52        11.74        13.08         3.22         2.01        15.09 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        6.18        23.05         2.24        11.24        13.74         1.35 
TCGA-14-0817 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
        5.39        26.33         2.04        28.90        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1450 TCGA-14-1451 
        0.79         1.38         1.12         3.75        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1458 TCGA-14-1459 
        7.10         1.15        30.15         0.92         6.12        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        0.99         1.94        17.82         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 
       17.49         7.96         3.39         9.86        19.10         5.49 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
        3.91         9.93         4.27        29.00         0.82         9.90 
TCGA-16-1056 TCGA-16-1062 TCGA-16-1063 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 
       13.35        18.28        13.97        11.77        21.86         0.43 
TCGA-19-0963 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 
       14.27        10.75         9.07         5.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1791 TCGA-19-2619 TCGA-19-2623 
        3.48         7.13        12.66         0.13         9.67         7.53 
TCGA-19-2624 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5952 
        0.16         7.00         7.04         6.64        11.28        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        4.73         7.96         1.78         5.39         5.29         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       10.03        13.87         9.73         7.10         9.37         9.40 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.84         1.22         1.58         7.92         2.30         4.80 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1838 
       16.57         9.86        18.25        33.14        21.30        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-28-1746 
       24.72        10.39        16.08         7.59         2.86         0.20 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        9.17         8.32         7.59         8.45         1.18         1.51 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-5204 
        0.13         0.66         6.74         4.77         7.30         3.91 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
        9.04        15.55         2.53        11.77         9.80        14.20 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1976 
        4.21         8.52        10.49         5.42        15.35         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
        0.10        15.85        19.50         4.67        12.69        14.83 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2616 TCGA-32-2632 TCGA-32-2638 TCGA-32-4210 
       12.23        20.78         7.33         8.84         7.36         3.68 
TCGA-32-4211 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       12.59         5.42         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        0.99         4.44         6.02        11.54         7.73         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
       17.52         4.31        14.33         8.22         7.46         4.77 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 
        4.54         3.09         3.65         9.14        10.78        16.67 
TCGA-76-6192 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6657 
        3.29        11.38        17.06         8.32        20.94         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

$`7P GAIN WILD-TYPE`
TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0024 TCGA-02-0026 
       35.41        20.71        82.55        20.61        53.06        24.59 
TCGA-02-0028 TCGA-02-0039 TCGA-02-0047 TCGA-02-0048 TCGA-02-0055 TCGA-02-0058 
       90.58        10.52        14.70         3.19         2.50         8.35 
TCGA-02-0060 TCGA-02-0068 TCGA-02-0069 TCGA-02-0080 TCGA-02-0084 TCGA-02-0104 
        6.02        26.43        28.70        89.72         0.23        65.00 
TCGA-02-0107 TCGA-02-0114 TCGA-02-0258 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       17.65        99.95        16.54        10.59        12.39        14.50 
TCGA-02-0432 TCGA-02-2483 TCGA-06-0119 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
       47.11        15.29         2.70         3.55        22.72        32.48 
TCGA-06-0132 TCGA-06-0139 TCGA-06-0141 TCGA-06-0142 TCGA-06-0146 TCGA-06-0147 
       18.74        10.75         9.21         2.20        20.09        16.70 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0165 TCGA-06-0178 TCGA-06-0187 TCGA-06-0189 
       11.80         2.56        10.65        53.98        26.33        14.93 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0410 TCGA-06-0414 TCGA-06-0650 TCGA-06-0747 
        0.33        18.02         4.67        35.01        23.57         2.70 
TCGA-06-0881 TCGA-06-1805 TCGA-06-2557 TCGA-06-2565 TCGA-06-2566 TCGA-06-2569 
        5.85         4.18         1.08         6.81         5.98         0.43 
TCGA-06-2570 TCGA-06-5410 TCGA-06-5412 TCGA-06-5416 TCGA-06-6389 TCGA-06-6693 
        9.37         3.52         4.54         6.71         7.76         0.49 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0246 TCGA-08-0344 TCGA-08-0350 TCGA-08-0351 
        4.77         4.96         3.91       108.82         3.39        53.79 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0521 TCGA-08-0524 
       11.77         8.52        18.44        58.19         4.80         6.51 
TCGA-12-0615 TCGA-12-0818 TCGA-12-0827 TCGA-14-0740 TCGA-14-0781 TCGA-14-0812 
       14.01        91.73        38.76        11.97         0.95         3.25 
TCGA-14-0862 TCGA-14-0865 TCGA-14-1402 TCGA-14-1456 TCGA-14-1821 TCGA-14-3477 
        2.89        16.50        32.02        40.93        17.75         3.75 
TCGA-15-1447 TCGA-16-0849 TCGA-16-0850 TCGA-16-1060 TCGA-16-1460 TCGA-19-0960 
       53.19        26.07        16.31         3.65         6.41         8.61 
TCGA-19-0964 TCGA-19-1388 TCGA-19-1789 TCGA-19-2620 TCGA-19-2621 TCGA-19-2625 
        3.39        12.95         3.25         4.87         1.08         4.08 
TCGA-19-2629 TCGA-19-5951 TCGA-19-5956 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 
       16.47         8.02         6.51        31.33        14.86         5.49 
TCGA-27-1836 TCGA-27-1837 TCGA-27-2521 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
       30.05        14.04        10.39        14.40        15.75         2.53 
TCGA-28-1756 TCGA-28-2514 TCGA-28-5215 TCGA-28-5216 TCGA-32-1973 TCGA-32-1980 
        2.83         5.26         7.79        13.64        21.07         1.18 
TCGA-32-1991 TCGA-32-2495 TCGA-32-2615 TCGA-32-2634 TCGA-32-4208 TCGA-32-4213 
       16.93        14.99        15.95         8.88        13.15        11.70 
TCGA-32-4719 TCGA-41-4097 TCGA-76-4934 TCGA-76-6193 TCGA-76-6656 
       10.85         0.20         2.53         2.70         4.83 

      7P GAIN CNV 7P GAIN WILD-TYPE 
             0.07              0.20 
      7P GAIN CNV 7P GAIN WILD-TYPE 
           127.56            108.82 
      7P GAIN CNV 7P GAIN WILD-TYPE 
             9.37             10.85 
[1] "0.1 - 127.6 (9.4)"  "0.2 - 108.8 (10.8)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
      "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
      "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"7P GAIN WILD-TYPE"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
      "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE"       "7P GAIN CNV" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" "7P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
      "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV"       "7P GAIN CNV" 
[1] "hr=" "1.4"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN CNV        168  259
  7P GAIN WILD-TYPE   50   75
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  FEMALE         168                50
  MALE           259                75
D13V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  7P GAIN CNV                                   4                  11
  7P GAIN WILD-TYPE                             4                   7
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  7P GAIN CNV                                   412
  7P GAIN WILD-TYPE                             114
D13V5, multiclass
                                 clus
vv                                7P GAIN CNV 7P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             4                 4
  TREATED PRIMARY GBM                      11                 7
  UNTREATED PRIMARY (DE NOVO) GBM         412               114
D13V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN CNV        289  138
  7P GAIN WILD-TYPE   92   33
     clus
vv    7P GAIN CNV 7P GAIN WILD-TYPE
  NO          289                92
  YES         138                33

Clustering(14) Variable = 7q gain
D14V1, survival
                   sevent
clus2                 0   1
  7Q GAIN CNV       104 327
  7Q GAIN WILD-TYPE  29  92
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
              431               121 
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
              327                92 
$`7Q GAIN CNV`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0016 TCGA-02-0021 
        9.14         4.73        18.35        10.59        55.86        77.62 
TCGA-02-0023 TCGA-02-0025 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       20.12        42.74        10.36         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 
       10.72        18.28         6.84        15.06        12.59         6.54 
TCGA-02-0057 TCGA-02-0059 TCGA-02-0064 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 
       19.86         9.57        19.73        25.05         5.49        10.19 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 
       20.84        27.22        89.72        22.72        51.29         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 TCGA-02-0111 
       57.76        16.93         3.48        26.99        11.67        23.15 
TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       92.61        15.65        48.95        16.54        16.90        17.69 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.86         7.69        10.62         0.16        15.91 
TCGA-02-0332 TCGA-02-0337 TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 
       25.71        25.12        14.50        10.55        11.34         9.24 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 
       16.18         3.35        16.80        12.92        15.42        16.18 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0130 TCGA-06-0133 
        0.26         4.04        47.31         0.10        10.52        14.07 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0140 TCGA-06-0143 TCGA-06-0145 TCGA-06-0148 
       23.05        22.16         0.20        11.74         2.33         9.80 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        7.82        19.46        46.59        11.80        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 
        3.19         5.46         9.44        56.84         5.29        19.04 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.12        13.02         0.23         2.20         2.73        51.32 
TCGA-06-0177 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
        1.97        19.00         2.53        40.37        37.02        26.33 
TCGA-06-0188 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       28.47        10.29        18.28         4.67         7.04         2.60 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 
        0.39         6.44         5.46         3.88         4.96        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 
        0.20        12.43        22.49        10.32        11.80        14.96 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 
       10.29         5.52         0.26        70.52         8.05         0.16 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0686 
       12.33         3.22         4.47         9.63         2.04         9.37 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       22.29        19.53         5.36         2.70         2.14         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0882 
        9.17         8.91         6.71         7.17        22.98         5.42 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
       20.94         7.43         6.35         3.58        26.79         8.65 
TCGA-06-1802 TCGA-06-1804 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
        7.86        13.58         0.76         4.90         9.27         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2567 TCGA-06-5408 TCGA-06-5411 TCGA-06-5413 
        8.52         5.95         4.37        11.21         8.35         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.98         8.55         2.73         3.75         6.12         4.54 
TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        3.91         5.36         1.45         7.36         8.28        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-08-0244 TCGA-08-0345 TCGA-08-0346 
        4.77         1.55         4.77        22.68         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
       13.78        10.39         7.59         1.28         6.41        15.06 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       14.70        35.64        19.50         0.95         9.17        10.85 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       15.72         3.19        10.59         0.30         0.56         3.48 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 
        1.28        10.72        15.98        17.29         5.52        14.40 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 
        1.61        10.39         5.95        10.52         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        24.13         6.08         2.63 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       18.08        28.37        12.43        53.10        43.10         5.49 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        9.11        14.83        14.27        91.73        24.76        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       10.62        23.51        27.78         8.91        20.58       127.56 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        5.82         6.21        21.63        11.97        11.38        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 
        9.11        14.53         3.98         3.39         9.44        25.28 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       13.61         6.38        59.41        43.20        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        11.77        11.74        13.08         3.22         2.01 
TCGA-14-0736 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
       15.09         6.18        23.05         2.24        11.24        13.74 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 
        1.35         5.39        26.33         2.04        28.90        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1450 
       19.30         0.79         1.38         1.12         3.75        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1458 TCGA-14-1459 
       23.11         7.10        30.15         0.92         6.12        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        0.99         1.94        17.82         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 
       17.49         7.96         3.39         9.86        19.10         5.49 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
        3.91         9.93         4.27        29.00         0.82         9.90 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 
       18.28        13.97         6.41        11.77        21.86         0.43 
TCGA-19-0963 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 
       14.27        10.75         9.07         5.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1791 TCGA-19-2619 TCGA-19-2623 
        3.48         7.13        12.66         0.13         9.67         7.53 
TCGA-19-2624 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5952 
        0.16         7.00         7.04         6.64        11.28        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        4.73         7.96         1.78         5.39         5.29         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       10.03        13.87         9.73         7.10         9.37         9.40 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.84         1.22         1.58         7.92         2.30         4.80 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1837 
       16.57         9.86        18.25        33.14        21.30        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       11.51        24.72        10.39        16.08         7.59         2.86 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.18         1.51         0.13         0.66         6.74         4.77 
TCGA-28-2513 TCGA-28-5204 TCGA-28-5207 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        7.30         3.91         9.04         2.53        11.77         9.80 
TCGA-28-5214 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       14.20         4.21         8.52        10.49         5.42        15.35 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1982 TCGA-32-1986 
        0.49         0.10        15.85        19.50         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 
       14.83        16.93        12.23        20.78        14.99         7.33 
TCGA-32-2632 TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 TCGA-32-5222 TCGA-41-2571 
        8.84         7.36         3.68        12.59         5.42         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44         6.02 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        17.52         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.46         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6280 TCGA-76-6282 
        9.14        10.78        16.67         3.29        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

$`7Q GAIN WILD-TYPE`
TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0024 
       23.18        35.41        20.71        82.55        20.61        53.06 
TCGA-02-0026 TCGA-02-0028 TCGA-02-0039 TCGA-02-0047 TCGA-02-0048 TCGA-02-0055 
       24.59        90.58        10.52        14.70         3.19         2.50 
TCGA-02-0058 TCGA-02-0060 TCGA-02-0068 TCGA-02-0069 TCGA-02-0084 TCGA-02-0104 
        8.35         6.02        26.43        28.70         0.23        65.00 
TCGA-02-0107 TCGA-02-0114 TCGA-02-0333 TCGA-02-0338 TCGA-02-0339 TCGA-02-0432 
       17.65        99.95         4.37        10.59        12.39        47.11 
TCGA-02-2483 TCGA-06-0119 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0132 
       15.29         2.70         3.55        22.72        32.48        18.74 
TCGA-06-0139 TCGA-06-0141 TCGA-06-0142 TCGA-06-0146 TCGA-06-0147 TCGA-06-0160 
       10.75         9.21         2.20        20.09        16.70        11.80 
TCGA-06-0162 TCGA-06-0165 TCGA-06-0178 TCGA-06-0189 TCGA-06-0219 TCGA-06-0221 
        2.56        10.65        53.98        14.93         0.33        18.02 
TCGA-06-0410 TCGA-06-0414 TCGA-06-0650 TCGA-06-0881 TCGA-06-1805 TCGA-06-2557 
        4.67        35.01        23.57         5.85         4.18         1.08 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2569 TCGA-06-2570 TCGA-06-5410 TCGA-06-5412 
        6.81         5.98         0.43         9.37         3.52         4.54 
TCGA-06-5416 TCGA-06-6389 TCGA-06-6693 TCGA-06-6701 TCGA-08-0245 TCGA-08-0246 
        6.71         7.76         0.49         4.96        34.75         3.91 
TCGA-08-0344 TCGA-08-0350 TCGA-08-0351 TCGA-08-0355 TCGA-08-0512 TCGA-08-0514 
      108.82         3.39        53.79        22.52        11.77         8.52 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0521 TCGA-08-0524 TCGA-12-0615 TCGA-12-0827 
       18.44        58.19         4.80         6.51        14.01        38.76 
TCGA-12-1091 TCGA-12-3652 TCGA-14-0740 TCGA-14-0781 TCGA-14-0812 TCGA-14-0862 
       30.54        34.52        11.97         0.95         3.25         2.89 
TCGA-14-0865 TCGA-14-1402 TCGA-14-1453 TCGA-14-1456 TCGA-14-1821 TCGA-14-3477 
       16.50        32.02         1.15        40.93        17.75         3.75 
TCGA-15-1447 TCGA-16-0849 TCGA-16-0850 TCGA-16-1056 TCGA-16-1060 TCGA-19-0960 
       53.19        26.07        16.31        13.35         3.65         8.61 
TCGA-19-0964 TCGA-19-1388 TCGA-19-1789 TCGA-19-2620 TCGA-19-2621 TCGA-19-2625 
        3.39        12.95         3.25         4.87         1.08         4.08 
TCGA-19-2629 TCGA-19-5951 TCGA-19-5956 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 
       16.47         8.02         6.51        31.33        14.86         5.49 
TCGA-27-1836 TCGA-27-2521 TCGA-27-2527 TCGA-27-2528 TCGA-28-1756 TCGA-28-2514 
       30.05        10.39        14.40        15.75         2.83         5.26 
TCGA-28-5208 TCGA-28-5215 TCGA-28-5216 TCGA-32-1973 TCGA-32-1980 TCGA-32-2615 
       15.55         7.79        13.64        21.07         1.18        15.95 
TCGA-32-2634 TCGA-32-4208 TCGA-32-4213 TCGA-32-4719 TCGA-41-4097 TCGA-76-4934 
        8.88        13.15        11.70        10.85         0.20         2.53 
TCGA-76-6193 
        2.70 

      7Q GAIN CNV 7Q GAIN WILD-TYPE 
             0.07              0.20 
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
           127.56            108.82 
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
             9.27             11.70 
[1] "0.1 - 127.6 (9.3)"  "0.2 - 108.8 (11.7)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
      "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"7Q GAIN WILD-TYPE"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
      "7Q GAIN CNV"       "7Q GAIN CNV" "7Q GAIN WILD-TYPE"       "7Q GAIN CNV" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
      "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV"       "7Q GAIN CNV" 
[1] "hr=" "1.3"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN CNV        167  264
  7Q GAIN WILD-TYPE   51   70
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  FEMALE         167                51
  MALE           264                70
D14V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  7Q GAIN CNV                                   4                  11
  7Q GAIN WILD-TYPE                             4                   7
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  7Q GAIN CNV                                   416
  7Q GAIN WILD-TYPE                             110
D14V5, multiclass
                                 clus
vv                                7Q GAIN CNV 7Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             4                 4
  TREATED PRIMARY GBM                      11                 7
  UNTREATED PRIMARY (DE NOVO) GBM         416               110
D14V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN CNV        292  139
  7Q GAIN WILD-TYPE   89   32
     clus
vv    7Q GAIN CNV 7Q GAIN WILD-TYPE
  NO          292                89
  YES         139                32

Clustering(15) Variable = 8p gain
D15V1, survival
                   sevent
clus2                 0   1
  8P GAIN CNV         6  20
  8P GAIN WILD-TYPE 127 399
      8P GAIN CNV 8P GAIN WILD-TYPE 
               26               526 
      8P GAIN CNV 8P GAIN WILD-TYPE 
               20               399 
$`8P GAIN CNV`
TCGA-02-0010 TCGA-02-0024 TCGA-02-0055 TCGA-02-0075 TCGA-02-0084 TCGA-06-0177 
       35.41        53.06         2.50        20.84         0.23         1.97 
TCGA-06-0209 TCGA-06-2569 TCGA-06-6389 TCGA-08-0350 TCGA-12-0819 TCGA-12-0827 
        3.88         0.43         7.76         3.39        24.76        38.76 
TCGA-12-1602 TCGA-14-0867 TCGA-14-0871 TCGA-14-1825 TCGA-19-1392 TCGA-27-1834 
        6.38         2.04        28.90         7.63         3.48        33.14 
TCGA-28-1746 TCGA-28-5218 TCGA-28-5219 TCGA-32-1970 TCGA-32-1976 TCGA-32-2632 
        0.20         4.21         8.52        15.35         0.49         8.84 
TCGA-41-2573 TCGA-41-5651 
        8.94        11.54 

$`8P GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0011 
        9.14         4.73        18.35        23.18        10.59        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 
       82.55        20.61        55.86        77.62        20.12        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       15.06        12.59         6.54        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        6.02        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 
       10.19        27.22        89.72        22.72        51.29         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 
       57.76        16.93         3.48        26.99        65.00        11.67 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
       17.65        23.15        92.61        99.95        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
       16.54        16.90        17.69        10.75        14.47         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.86         7.69 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       10.62         0.16        15.91        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
        9.24        16.18         3.35        16.80        12.92        15.29 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.42        16.18         2.70         0.26         4.04        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
        0.10         3.55        22.72        32.48        10.52        18.74 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.07        23.05        22.16        10.75         0.20         9.21 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        16.70         9.80 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        7.82        19.46        46.59        11.80        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19         5.46         9.44        11.80         2.56        56.84 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.29        19.04         3.12        13.02         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        2.20         2.73        51.32        53.98        19.00         2.53 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       40.37        37.02        26.33        28.47        14.93        10.29 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       18.28         4.67         7.04         2.60         0.39         6.44 
TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        5.46         4.96        11.84         0.20        12.43        22.49 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 
        0.33        18.02        10.32        11.80        14.96        10.29 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
        5.52         0.26        70.52         4.67         8.05         0.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.01        12.33         3.22         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57         9.37        22.29        19.53         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.14         0.92         9.17         8.91         6.71         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       22.98         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        3.58        26.79         8.65         7.86        13.58         4.18 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08         0.76         4.90         9.27         2.83         8.52 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 
        5.95         6.81         5.98         4.37         9.37        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.52         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.12         4.54         3.91 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.36         1.45         0.49         7.36         8.28        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 
        4.77         1.55         4.77         4.96        22.68        34.75 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
        3.91       108.82         1.74         4.34        13.78        10.39 
TCGA-08-0349 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
        7.59        53.79         1.28         6.41        15.06        22.52 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       14.70        35.64        19.50         0.95         9.17        10.85 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       15.72         3.19        10.59         0.30         0.56         3.48 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
       11.77         8.52        18.44        58.19         1.28        10.72 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         6.51        15.98        17.29         5.52        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 
       14.40         1.61        10.39         5.95        10.52         7.17 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       65.88         0.10        38.17        25.97        24.13         6.08 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        2.63        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0820 
        5.49         9.11        14.83        14.27        91.73        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       10.62        23.51        27.78         8.91        20.58       127.56 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         6.21        30.54        21.63        11.97        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       15.85         9.11        14.53         3.98         3.39         9.44 
TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       25.28        13.61        59.41        43.20        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.95        11.77        34.52        11.74        13.08         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        2.01        15.09        11.97         0.95         6.18        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
        2.24        11.24        13.74         3.25         1.35         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
        2.89        16.50        26.33        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1827 
       12.43         0.99         1.94        17.75        17.82         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 
        7.13        17.49         7.96         3.75         3.39         9.86 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
       19.10        53.19         5.49         3.91         9.93        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       16.31         4.27        29.00         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        3.65        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.43        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1786 TCGA-19-1787 
        5.95        12.95         4.64        25.38         7.13        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        0.16         4.08        16.47         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        6.51         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
        9.73        31.33         7.10         9.37         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.84         1.22         1.58         7.92         2.30 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 
        4.80        16.57         9.86        18.25        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.72        10.39        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1749 
        7.59         2.86        14.40        15.75         2.53         9.17 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
        8.32         7.59         8.45         1.18         1.51         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        0.13         0.66         6.74         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        3.91         9.04        15.55         2.53        11.77         9.80 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5220 TCGA-28-6450 TCGA-32-1973 
       14.20         7.79        13.64        10.49         5.42        21.07 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.83        16.93        12.23        20.78        14.99        15.95 
TCGA-32-2616 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
        7.33         8.88         7.36        13.15         3.68        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2575 
       11.70        10.85         5.42         0.85        13.35         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-74-6573 
        0.99         4.44         6.02         0.20         7.73         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
       17.52         4.31        14.33         8.22         7.46         4.77 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 
        4.54         3.09         3.65         9.14         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.67         3.29         2.70        11.38        17.06         8.32 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.94         4.83         5.03         0.23         9.24         7.69 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.76         1.61        17.69         0.07 

      8P GAIN CNV 8P GAIN WILD-TYPE 
             0.20              0.07 
      8P GAIN CNV 8P GAIN WILD-TYPE 
            53.06            127.56 
      8P GAIN CNV 8P GAIN WILD-TYPE 
            7.695             9.765 
[1] "0.2 - 53.1 (7.7)"  "0.1 - 127.6 (9.8)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
      "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
      "8P GAIN CNV" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
      "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
      "8P GAIN CNV" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV"       "8P GAIN CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
      "8P GAIN CNV"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
      "8P GAIN CNV" "8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
      "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"       "8P GAIN CNV" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"8P GAIN WILD-TYPE"       "8P GAIN CNV" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN CNV         12   14
  8P GAIN WILD-TYPE  206  320
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  FEMALE          12               206
  MALE            14               320
D15V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  8P GAIN CNV                                   0                   2
  8P GAIN WILD-TYPE                             8                  16
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  8P GAIN CNV                                    24
  8P GAIN WILD-TYPE                             502
D15V5, multiclass
                                 clus
vv                                8P GAIN CNV 8P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       2                16
  UNTREATED PRIMARY (DE NOVO) GBM          24               502
D15V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN CNV         16   10
  8P GAIN WILD-TYPE  365  161
     clus
vv    8P GAIN CNV 8P GAIN WILD-TYPE
  NO           16               365
  YES          10               161

Clustering(16) Variable = 8q gain
D16V1, survival
                   sevent
clus2                 0   1
  8Q GAIN CNV         8  23
  8Q GAIN WILD-TYPE 125 396
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
               31               521 
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
               23               396 
$`8Q GAIN CNV`
TCGA-02-0010 TCGA-02-0037 TCGA-02-0055 TCGA-02-0075 TCGA-02-0084 TCGA-02-0104 
       35.41         3.58         2.50        20.84         0.23        65.00 
TCGA-02-2483 TCGA-06-0177 TCGA-06-0209 TCGA-06-2569 TCGA-06-6389 TCGA-08-0350 
       15.29         1.97         3.88         0.43         7.76         3.39 
TCGA-08-0516 TCGA-12-0819 TCGA-12-0827 TCGA-12-1602 TCGA-14-0867 TCGA-14-0871 
       18.44        24.76        38.76         6.38         2.04        28.90 
TCGA-14-1456 TCGA-14-1825 TCGA-19-1392 TCGA-27-1834 TCGA-28-1746 TCGA-28-5215 
       40.93         7.63         3.48        33.14         0.20         7.79 
TCGA-28-5218 TCGA-28-5219 TCGA-32-1970 TCGA-32-1976 TCGA-32-2632 TCGA-41-2573 
        4.21         8.52        15.35         0.49         8.84         8.94 
TCGA-41-5651 
       11.54 

$`8Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0011 
        9.14         4.73        18.35        23.18        10.59        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       15.06        12.59         6.54        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        6.02        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 
       10.19        27.22        89.72        22.72        51.29         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 
       57.76        16.93         3.48        26.99        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       23.15        92.61        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.90        17.69        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.86         7.69        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        0.16        15.91        25.71         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.24 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 
       16.18         3.35        16.80        12.92        15.42        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        32.48        10.52        18.74        14.07        23.05 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       22.16        10.75         0.20         9.21         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        16.70         9.80         7.82        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       46.59        11.80        12.79         8.65         3.19         5.46 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         2.56        56.84        10.65         5.29 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.04         3.12        13.02         0.23         2.20         2.73 
TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
       51.32        53.98        19.00         2.53        40.37        37.02 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       26.33        28.47        14.93        10.29        18.28         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 
        7.04         2.60         0.39         6.44         5.46         4.96 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
       11.84         0.20        12.43        22.49         0.33        18.02 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       10.32        11.80        14.96        10.29         5.52         0.26 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
       70.52         4.67         8.05         0.16        35.01        12.33 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        3.22         4.47         9.63         2.04        23.57         9.37 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       22.29        19.53         5.36         2.70         2.14         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        9.17         8.91         6.71         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 
        5.42        20.94         7.43         6.35         3.58        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
        8.65         7.86        13.58         4.18         1.08         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.90         9.27         2.83         8.52         5.95         6.81 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        5.98         4.37         9.37        11.21         3.52         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 
        4.54         8.81         8.98         8.55         6.71         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 
        3.75         6.12         4.54         3.91         5.36         1.45 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        0.49         7.36         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 
        4.77         4.96        22.68        34.75         3.91       108.82 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0351 
        1.74         4.34        13.78        10.39         7.59        53.79 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       19.50         0.95         9.17        10.85        15.72         3.19 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       10.59         0.30         0.56         3.48        11.77         8.52 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       58.19         1.28        10.72         4.80         6.51        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       17.29         5.52        14.01        14.40         1.61        10.39 
TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
        5.95        10.52         7.17        65.88         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        24.13         6.08         2.63        18.08        28.37 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       12.43        53.10        43.10         5.49         9.11        14.83 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       14.27        91.73        18.48        10.62        23.51        27.78 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.91        20.58       127.56         5.82         6.21        30.54 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.63        11.97        11.38        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 
        3.98         3.39         9.44        25.28        13.61        59.41 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       43.20        25.78        11.54        10.95        11.77        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       11.74        13.08         3.22         2.01        15.09        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.18        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        3.25         1.35         5.39         2.89        16.50        26.33 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.02        58.78        23.11         7.10         1.15        30.15 
TCGA-14-1455 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
        0.92         6.12        12.43         0.99         1.94        17.75 
TCGA-14-1823 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
       17.82         5.88         7.13        17.49         7.96         3.75 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
        3.39         9.86        19.10        53.19         5.49         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        9.93        26.07        16.31         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
       10.75         9.07         5.95        12.95         4.64        25.38 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        7.13        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        16.47         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        11.28         8.02        18.64         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        7.96         1.78         6.51         5.39         5.29         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
       10.03        13.87         9.73        31.33         7.10         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.84         1.22         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.17         8.32         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.51         2.83         0.13         0.66         6.74         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26         3.91         9.04        15.55         2.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 TCGA-28-5220 TCGA-28-6450 
       11.77         9.80        14.20        13.64        10.49         5.42 
TCGA-32-1973 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
       21.07         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
       15.95         7.33         8.88         7.36        13.15         3.68 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        11.70        10.85         5.42         0.85        13.35 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 
        9.53         0.99         4.44         6.02         0.20         7.73 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        17.52         4.31        14.33         8.22         7.46 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.77         4.54         3.09         3.65         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

      8Q GAIN CNV 8Q GAIN WILD-TYPE 
             0.20              0.07 
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
            65.00            127.56 
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
             7.79              9.73 
[1] "0.2 - 65.0 (7.8)"  "0.1 - 127.6 (9.7)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV"       "8Q GAIN CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
      "8Q GAIN CNV"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
      "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"       "8Q GAIN CNV" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"8Q GAIN WILD-TYPE"       "8Q GAIN CNV" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN CNV         15   16
  8Q GAIN WILD-TYPE  203  318
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  FEMALE          15               203
  MALE            16               318
D16V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  8Q GAIN CNV                                   0                   1
  8Q GAIN WILD-TYPE                             8                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  8Q GAIN CNV                                    30
  8Q GAIN WILD-TYPE                             496
D16V5, multiclass
                                 clus
vv                                8Q GAIN CNV 8Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       1                17
  UNTREATED PRIMARY (DE NOVO) GBM          30               496
D16V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN CNV         20   11
  8Q GAIN WILD-TYPE  361  160
     clus
vv    8Q GAIN CNV 8Q GAIN WILD-TYPE
  NO           20               361
  YES          11               160

Clustering(17) Variable = 9p gain
D17V1, survival
                   sevent
clus2                 0   1
  9P GAIN CNV         8   9
  9P GAIN WILD-TYPE 125 410
      9P GAIN CNV 9P GAIN WILD-TYPE 
               17               535 
      9P GAIN CNV 9P GAIN WILD-TYPE 
                9               410 
$`9P GAIN CNV`
TCGA-02-0001 TCGA-02-0069 TCGA-02-0266 TCGA-02-0332 TCGA-06-0129 TCGA-06-0195 
        9.14        28.70        17.69        25.71        32.48         7.04 
TCGA-06-0410 TCGA-06-5416 TCGA-12-0691 TCGA-12-0773 TCGA-14-3477 TCGA-19-4065 
        4.67         6.71         6.08        43.10         3.75         7.04 
TCGA-26-5136 TCGA-27-1838 TCGA-28-2509 TCGA-28-5216 TCGA-41-3915 
        1.22        11.51         4.77        13.64         6.02 

$`9P GAIN WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 
        8.35         9.57         6.02        19.73        26.43        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
        5.49        10.19        20.84        27.22        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
        0.23        51.29         8.81        57.76        16.93         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
       26.99        65.00        11.67        17.65        23.15        92.61 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 
       99.95        15.65        48.95        16.54        16.90        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0333 
        9.86         7.69        10.62         0.16        15.91         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.24        16.18         3.35        16.80        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.29        15.42        16.18         2.70         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 
       47.31         0.10         3.55        22.72        10.52        18.74 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.07        23.05        22.16        10.75         0.20         9.21 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        16.70         9.80 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        7.82        19.46        46.59        11.80        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19         5.46         9.44        11.80         2.56        56.84 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.29        19.04         3.12        13.02         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        2.20         2.73        51.32         1.97        53.98        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        2.53        40.37        37.02        26.33        28.47        14.93 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       10.29        18.28         4.67         2.60         0.39         6.44 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        5.46         3.88         4.96        11.84         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 
       22.49         0.33        18.02        10.32        11.80        14.96 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 
       10.29         5.52         0.26        70.52         8.05         0.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.01        12.33         3.22         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57         9.37        22.29        19.53         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.14         0.92         9.17         8.91         6.71         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       22.98         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        3.58        26.79         8.65         7.86        13.58         4.18 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08         0.76         4.90         9.27         2.83         8.52 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95         6.81         5.98         4.37         0.43         9.37 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.21         3.52         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        8.55         2.73         3.75         6.12         4.54         3.91 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.76         5.36         1.45         0.49         7.36         8.28 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 
       12.85         4.77         1.55         4.77         4.96        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       34.75         3.91       108.82         1.74         4.34        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       10.39         7.59         3.39        53.79         1.28         6.41 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        9.17        10.85        15.72         3.19        10.59         0.30 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
        0.56         3.48        11.77         8.52        18.44        58.19 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
        1.28        10.72         4.80         6.51        15.98        17.29 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
        5.52        14.01        14.40         1.61        10.39         5.95 
TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
       10.52         7.17        65.88         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
       24.13         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        5.49         9.11        14.83        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 
       18.48        10.62        23.51        27.78        38.76         8.91 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.56         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       11.97        11.38        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
        3.39         9.44        25.28        13.61         6.38        59.41 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       43.20        25.78        11.54        10.95        11.77        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       11.74        13.08         3.22         2.01        15.09        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.18        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        3.25         1.35         5.39         2.89        16.50        26.33 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
        2.04        28.90        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.02        58.78        23.11         7.10 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        1.15        30.15         0.92        40.93         6.12        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
        0.99         1.94        17.75        17.82         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 
        7.13        17.49         7.96         3.39         9.86        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 
       53.19         5.49         3.91         9.93        26.07        16.31 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.27        29.00         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       18.28        13.97         6.41        11.77        21.86         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 
       12.95         4.64        25.38         3.48         7.13        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 
        0.16         4.08        16.47         7.00         6.64        11.28 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.64         4.73         7.96         1.78         6.51 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
        5.39         5.29         5.42        10.03        13.87         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       31.33         7.10         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        8.84         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        18.25        33.14        21.30        30.05        14.04 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.72        10.39        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.75         0.20         2.53         9.17         8.32 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.59         8.45         1.18         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         6.74         7.30         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.55         2.53        11.77         9.80        14.20         7.79 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        4.21         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.95         7.33         8.84         8.88         7.36        13.15 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.68        12.59        11.70        10.85         5.42         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 
       13.35         8.94         9.53         0.99         4.44         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        17.52         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.46         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.32        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

      9P GAIN CNV 9P GAIN WILD-TYPE 
             1.22              0.07 
      9P GAIN CNV 9P GAIN WILD-TYPE 
            43.10            127.56 
      9P GAIN CNV 9P GAIN WILD-TYPE 
             7.04              9.63 
[1] "1.2 - 43.1 (7.0)"  "0.1 - 127.6 (9.6)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"9P GAIN WILD-TYPE"       "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
      "9P GAIN CNV" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"       "9P GAIN CNV" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN CNV          9    8
  9P GAIN WILD-TYPE  209  326
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  FEMALE           9               209
  MALE             8               326
D17V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  9P GAIN CNV                                   0                   0
  9P GAIN WILD-TYPE                             8                  18
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  9P GAIN CNV                                    17
  9P GAIN WILD-TYPE                             509
D17V5, multiclass
                                 clus
vv                                9P GAIN CNV 9P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       0                18
  UNTREATED PRIMARY (DE NOVO) GBM          17               509
D17V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN CNV         13    4
  9P GAIN WILD-TYPE  368  167
     clus
vv    9P GAIN CNV 9P GAIN WILD-TYPE
  NO           13               368
  YES           4               167

Clustering(18) Variable = 9q gain
D18V1, survival
                   sevent
clus2                 0   1
  9Q GAIN CNV        12  20
  9Q GAIN WILD-TYPE 121 399
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
               32               520 
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
               20               399 
$`9Q GAIN CNV`
TCGA-02-0001 TCGA-02-0069 TCGA-02-0114 TCGA-02-0266 TCGA-02-0332 TCGA-06-0129 
        9.14        28.70        99.95        17.69        25.71        32.48 
TCGA-06-0175 TCGA-06-0185 TCGA-06-0195 TCGA-06-0410 TCGA-06-0413 TCGA-06-2562 
        2.73        37.02         7.04         4.67         0.16         2.83 
TCGA-06-2569 TCGA-12-0618 TCGA-12-0654 TCGA-12-0691 TCGA-12-0773 TCGA-12-0827 
        0.43         1.61         7.17         6.08        43.10        38.76 
TCGA-12-1088 TCGA-12-1098 TCGA-12-5299 TCGA-14-1821 TCGA-14-3477 TCGA-19-4065 
      127.56         3.98         3.22        17.75         3.75         7.04 
TCGA-26-5136 TCGA-27-1838 TCGA-28-1751 TCGA-28-2509 TCGA-28-5216 TCGA-32-2495 
        1.22        11.51         7.59         4.77        13.64        14.99 
TCGA-41-2573 TCGA-41-3915 
        8.94         6.02 

$`9Q GAIN WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 
        8.35         9.57         6.02        19.73        26.43        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
        5.49        10.19        20.84        27.22        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
        0.23        51.29         8.81        57.76        16.93         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
       26.99        65.00        11.67        17.65        23.15        92.61 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 
       15.65        48.95        16.54        16.90        10.75        14.47 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
        3.98        13.87        14.20        15.95        12.23         9.86 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0333 TCGA-02-0337 
        7.69        10.62         0.16        15.91         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
        9.24        16.18         3.35        16.80        12.92        15.29 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.42        16.18         2.70         0.26         4.04        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        0.10         3.55        22.72        10.52        18.74        14.07 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       23.05        22.16        10.75         0.20         9.21         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        16.70         9.80         7.82 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
        5.46         9.44        11.80         2.56        56.84        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.29        19.04         3.12        13.02         0.23         2.20 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       51.32         1.97        53.98        19.00         2.53        40.37 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       26.33        28.47        14.93        10.29        18.28         4.67 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        2.60         0.39         6.44         5.46         3.88         4.96 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
       11.84         0.20        12.43        22.49         0.33        18.02 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       10.32        11.80        14.96        10.29         5.52         0.26 
TCGA-06-0409 TCGA-06-0412 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       70.52         8.05        35.01        12.33         3.22         4.47 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.63         2.04        23.57         9.37        22.29        19.53 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        5.36         2.70         2.14         0.92         9.17         8.91 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        6.71         7.17        22.98         5.85         5.42        20.94 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
        7.43         6.35         3.58        26.79         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.58         4.18         1.08         0.76         4.90         9.27 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 
        8.52         5.95         6.81         5.98         4.37         9.37 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.21         3.52         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         6.71         2.73         3.75         6.12         4.54 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        3.91         7.76         5.36         1.45         0.49         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.28        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
       22.68        34.75         3.91       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        6.41        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        0.95         9.17        10.85        15.72         3.19        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
        0.30         0.56         3.48        11.77         8.52        18.44 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       58.19         1.28        10.72         4.80         6.51        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0619 TCGA-12-0620 
       17.29         5.52        14.01        14.40        10.39         5.95 
TCGA-12-0653 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
       10.52        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 
        2.63        18.08        28.37        12.43        53.10         5.49 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        9.11        14.83        14.27        91.73        24.76        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1089 
       10.62        23.51        27.78         8.91        20.58         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        6.21        30.54        21.63        11.97        11.38        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
        9.11        14.53         3.39         9.44        25.28        13.61 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
        6.38        59.41        43.20        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5301 TCGA-14-0736 
       11.77        34.52        11.74        13.08         2.01        15.09 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.18        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 
       13.74         3.25         1.35         5.39         2.89        16.50 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       26.33         2.04        28.90        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
       12.43         0.99         1.94        17.82         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 
        7.13        17.49         7.96         3.39         9.86        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 
       53.19         5.49         3.91         9.93        26.07        16.31 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.27        29.00         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       18.28        13.97         6.41        11.77        21.86         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 
       12.95         4.64        25.38         3.48         7.13        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 
        0.16         4.08        16.47         7.00         6.64        11.28 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.64         4.73         7.96         1.78         6.51 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
        5.39         5.29         5.42        10.03        13.87         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       31.33         7.10         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        8.84         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        18.25        33.14        21.30        30.05        14.04 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.72        10.39        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.75         0.20         2.53         9.17         8.32 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.45         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        6.74         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 
        2.53        11.77         9.80        14.20         7.79         4.21 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        8.52        10.49         5.42        15.35        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2615 TCGA-32-2616 
       14.83        16.93        12.23        20.78        15.95         7.33 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
        8.84         8.88         7.36        13.15         3.68        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2575 
       11.70        10.85         5.42         0.85        13.35         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        0.99         4.44         0.20        11.54         7.73         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
       17.52         4.31        14.33         8.22         7.46         4.77 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 
        4.54         3.09         3.65         9.14         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.67         3.29         2.70        11.38        17.06         8.32 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.94         4.83         5.03         0.23         9.24         7.69 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.76         1.61        17.69         0.07 

      9Q GAIN CNV 9Q GAIN WILD-TYPE 
             0.16              0.07 
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
           127.56            108.82 
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
             7.38              9.70 
[1] "0.2 - 127.6 (7.4)" "0.1 - 108.8 (9.7)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
      "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"9Q GAIN WILD-TYPE"       "9Q GAIN CNV" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"       "9Q GAIN CNV" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN CNV         18   14
  9Q GAIN WILD-TYPE  200  320
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  FEMALE          18               200
  MALE            14               320
D18V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  9Q GAIN CNV                                   0                   2
  9Q GAIN WILD-TYPE                             8                  16
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  9Q GAIN CNV                                    30
  9Q GAIN WILD-TYPE                             496
D18V5, multiclass
                                 clus
vv                                9Q GAIN CNV 9Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       2                16
  UNTREATED PRIMARY (DE NOVO) GBM          30               496
D18V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN CNV         25    7
  9Q GAIN WILD-TYPE  356  164
     clus
vv    9Q GAIN CNV 9Q GAIN WILD-TYPE
  NO           25               356
  YES           7               164

Clustering(19) Variable = 10p gain
D19V1, survival
                    sevent
clus2                  0   1
  10P GAIN CNV         4   7
  10P GAIN WILD-TYPE 129 412
      10P GAIN CNV 10P GAIN WILD-TYPE 
                11                541 
      10P GAIN CNV 10P GAIN WILD-TYPE 
                 7                412 
$`10P GAIN CNV`
TCGA-02-0011 TCGA-02-0069 TCGA-02-0080 TCGA-02-0087 TCGA-02-0114 TCGA-06-2569 
       20.71        28.70        89.72        57.76        99.95         0.43 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0517 TCGA-12-1099 TCGA-14-3477 
        3.39        53.79        58.19         3.39         3.75 

$`10P GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 
        8.35         9.57         6.02        19.73        26.43        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0083 TCGA-02-0084 
        5.49        10.19        20.84        27.22        22.72         0.23 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
       51.29         8.81        16.93         3.48        26.99        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 
       11.67        17.65        23.15        92.61        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
       16.54        16.90        17.69        10.75        14.47         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.86         7.69 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       10.62         0.16        15.91        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
        9.24        16.18         3.35        16.80        12.92        15.29 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.42        16.18         2.70         0.26         4.04        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
        0.10         3.55        22.72        32.48        10.52        18.74 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.07        23.05        22.16        10.75         0.20         9.21 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        16.70         9.80 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        7.82        19.46        46.59        11.80        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19         5.46         9.44        11.80         2.56        56.84 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.29        19.04         3.12        13.02         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        2.20         2.73        51.32         1.97        53.98        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        2.53        40.37        37.02        26.33        28.47        14.93 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.29        18.28         4.67         7.04         2.60         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        6.44         5.46         3.88         4.96        11.84         0.20 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
       12.43        22.49         0.33        18.02        10.32        11.80 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       14.96        10.29         5.52         0.26        70.52         4.67 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        8.05         0.16        35.01        12.33         3.22         4.47 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.63         2.04        23.57         9.37        22.29        19.53 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        5.36         2.70         2.14         0.92         9.17         8.91 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        6.71         7.17        22.98         5.85         5.42        20.94 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
        7.43         6.35         3.58        26.79         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.58         4.18         1.08         0.76         4.90         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
        2.83         8.52         5.95         6.81         5.98         4.37 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        9.37        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         6.71         2.73         3.75         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        4.96        22.68        34.75         3.91       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0352 TCGA-08-0353 
        4.34        13.78        10.39         7.59         1.28         6.41 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        9.17        10.85        15.72         3.19        10.59         0.30 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 
        0.56         3.48        11.77         8.52        18.44         1.28 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.72         4.80         6.51        15.98        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 
       14.01        14.40         1.61        10.39         5.95        10.52 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.10         5.49         9.11        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.76        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.91        20.58       127.56         5.82         6.21        30.54 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.63        11.97        11.38        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
        3.98         9.44        25.28        13.61         6.38        59.41 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       43.20        25.78        11.54        10.95        11.77        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       11.74        13.08         3.22         2.01        15.09        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.18        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        3.25         1.35         5.39         2.89        16.50        26.33 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
        2.04        28.90        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.02        58.78        23.11         7.10 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        1.15        30.15         0.92        40.93         6.12        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
        0.99         1.94        17.75        17.82         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 
        7.13        17.49         7.96         3.39         9.86        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 
       53.19         5.49         3.91         9.93        26.07        16.31 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.27        29.00         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       18.28        13.97         6.41        11.77        21.86         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 
       12.95         4.64        25.38         3.48         7.13        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        0.16         4.08        16.47         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        6.51         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
        9.73        31.33         7.10         9.37         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.84         1.22         1.58         7.92         2.30 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        4.80        16.57         9.86        18.25        33.14        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.72        10.39        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.17         8.32         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.51         2.83         0.13         0.66         6.74         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26         3.91         9.04        15.55         2.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77         9.80        14.20         7.79        13.64         4.21 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        8.52        10.49         5.42        15.35        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.83        16.93        12.23        20.78        14.99        15.95 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
        7.33         8.84         8.88         7.36        13.15         3.68 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        11.70        10.85         5.42         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44         6.02         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        17.52         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.46         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.32        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

      10P GAIN CNV 10P GAIN WILD-TYPE 
              0.43               0.07 
      10P GAIN CNV 10P GAIN WILD-TYPE 
             99.95             127.56 
      10P GAIN CNV 10P GAIN WILD-TYPE 
             28.70               9.44 
[1] "0.4 - 100.0 (28.7)" "0.1 - 127.6 (9.4)" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
      "10P GAIN CNV" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"       "10P GAIN CNV" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"10P GAIN WILD-TYPE"       "10P GAIN CNV"       "10P GAIN CNV" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"10P GAIN WILD-TYPE"       "10P GAIN CNV" "10P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
[1] "hr=" "3"  
D19V2, continuous
D19V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN CNV          8    3
  10P GAIN WILD-TYPE  210  331
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  FEMALE            8                210
  MALE              3                331
D19V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  10P GAIN CNV                                   0                   1
  10P GAIN WILD-TYPE                             8                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  10P GAIN CNV                                    10
  10P GAIN WILD-TYPE                             516
D19V5, multiclass
                                 clus
vv                                10P GAIN CNV 10P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0                  8
  TREATED PRIMARY GBM                        1                 17
  UNTREATED PRIMARY (DE NOVO) GBM           10                516
D19V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN CNV          8    3
  10P GAIN WILD-TYPE  373  168
     clus
vv    10P GAIN CNV 10P GAIN WILD-TYPE
  NO             8                373
  YES            3                168

Clustering(20) Variable = 11p gain
D20V1, survival
                    sevent
clus2                  0   1
  11P GAIN CNV         1   3
  11P GAIN WILD-TYPE 132 416
      11P GAIN CNV 11P GAIN WILD-TYPE 
                 4                548 
      11P GAIN CNV 11P GAIN WILD-TYPE 
                 3                416 
$`11P GAIN CNV`
TCGA-02-0014 TCGA-02-0054 TCGA-19-4065 TCGA-27-2526 
       82.55         6.54         7.04         2.86 

$`11P GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       20.71        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
        3.19        15.06        12.59         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        9.57         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
        5.49        10.19        20.84        27.22        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
        0.23        51.29         8.81        57.76        16.93         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
       26.99        65.00        11.67        17.65        23.15        92.61 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.95        15.65        48.95        16.54        16.90        17.69 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.86         7.69        10.62         0.16        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         2.56        56.84        10.65         5.29        19.04 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.12        13.02         0.23         2.20         2.73        51.32 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        1.97        53.98        19.00         2.53        40.37        37.02 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       26.33        28.47        14.93        10.29        18.28         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        7.04         2.60         0.39         6.44         5.46         3.88 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        4.96        11.84         0.20        12.43        22.49         0.33 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       18.02        10.32        11.80        14.96        10.29         5.52 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
        0.26        70.52         4.67         8.05         0.16        35.01 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.33         3.22         4.47         9.63         2.04        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        9.37        22.29        19.53         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92         9.17         8.91         6.71         7.17        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
        5.85         5.42        20.94         7.43         6.35         3.58 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
       26.79         8.65         7.86        13.58         4.18         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        0.76         4.90         9.27         2.83         8.52         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        6.81         5.98         4.37         0.43         9.37        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.52         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.12         4.54         3.91 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.76         5.36         1.45         0.49         7.36         8.28 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 
       12.85         4.77         1.55         4.77         4.96        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       34.75         3.91       108.82         1.74         4.34        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       10.39         7.59         3.39        53.79         1.28         6.41 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        9.17        10.85        15.72         3.19        10.59         0.30 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
        0.56         3.48        11.77         8.52        18.44        58.19 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
        1.28        10.72         4.80         6.51        15.98        17.29 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
        5.52        14.01        14.40         1.61        10.39         5.95 
TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
       10.52         7.17        65.88         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       24.13         6.08         2.63        18.08        28.37        12.43 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       53.10        43.10         5.49         9.11        14.83        14.27 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       91.73        24.76        18.48        10.62        23.51        27.78 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       38.76         8.91        20.58       127.56         5.82         6.21 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
       30.54        21.63        11.97        11.38        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
       14.53         3.98         3.39         9.44        25.28        13.61 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
        6.38        59.41        43.20        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       11.77        34.52        11.74        13.08         3.22         2.01 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
       15.09        11.97         0.95         6.18        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
       11.24        13.74         3.25         1.35         5.39         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
       16.50        26.33         2.04        28.90        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.02        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       23.11         7.10         1.15        30.15         0.92        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 
        6.12        12.43         0.99         1.94        17.75        17.82 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.13        17.49         7.96         3.75 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
        3.39         9.86        19.10        53.19         5.49         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        9.93        26.07        16.31         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
       10.75         9.07         5.95        12.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.48         7.13        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        16.47 
TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.00         6.64        11.28         8.02        18.64         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        7.96         1.78         6.51         5.39         5.29         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
       10.03        13.87         9.73        31.33         7.10         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.84         1.22         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2527 TCGA-27-2528 
       10.39        10.39        16.08         7.59        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.18         1.51         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77         9.80        14.20         7.79        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        4.21         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.95         7.33         8.84         8.88         7.36        13.15 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.68        12.59        11.70        10.85         5.42         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44         6.02 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        11.54         7.73         3.45        17.52         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.46         4.77         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.14         2.53        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.32        20.94         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

      11P GAIN CNV 11P GAIN WILD-TYPE 
              2.86               0.07 
      11P GAIN CNV 11P GAIN WILD-TYPE 
             82.55             127.56 
      11P GAIN CNV 11P GAIN WILD-TYPE 
              6.79               9.60 
[1] "2.9 - 82.5 (6.8)"  "0.1 - 127.6 (9.6)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
      "11P GAIN CNV" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"11P GAIN WILD-TYPE"       "11P GAIN CNV" "11P GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN CNV          2    2
  11P GAIN WILD-TYPE  216  332
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  FEMALE            2                216
  MALE              2                332
D20V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  11P GAIN CNV                                   0                   0
  11P GAIN WILD-TYPE                             8                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  11P GAIN CNV                                     4
  11P GAIN WILD-TYPE                             522
D20V5, multiclass
                                 clus
vv                                11P GAIN CNV 11P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0                  8
  TREATED PRIMARY GBM                        0                 18
  UNTREATED PRIMARY (DE NOVO) GBM            4                522
D20V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN CNV          3    1
  11P GAIN WILD-TYPE  378  170
     clus
vv    11P GAIN CNV 11P GAIN WILD-TYPE
  NO             3                378
  YES            1                170

Clustering(21) Variable = 11q gain
D21V1, survival
                    sevent
clus2                  0   1
  11Q GAIN CNV         1   6
  11Q GAIN WILD-TYPE 132 413
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                 7                545 
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                 6                413 
$`11Q GAIN CNV`
TCGA-02-0014 TCGA-02-2466 TCGA-06-0128 TCGA-06-0175 TCGA-06-1086 TCGA-12-0818 
       82.55        16.80        22.72         2.73         6.35        91.73 
TCGA-19-4065 
        7.04 

$`11Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       20.71        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
        3.35        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 
        0.26         4.04        47.31         0.10         3.55        32.48 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       10.52        18.74        14.07        23.05        22.16        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20         9.21         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       16.70         9.80         7.82        19.46        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.79         8.65         3.19         5.46         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        2.56        56.84        10.65         5.29        19.04         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
       13.02         0.23         2.20        51.32         1.97        53.98 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
       19.00         2.53        40.37        37.02        26.33        28.47 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       14.93        10.29        18.28         4.67         7.04         2.60 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 
        0.39         6.44         5.46         3.88         4.96        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 
        0.20        12.43        22.49         0.33        18.02        10.32 
TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       11.80        14.96        10.29         5.52         0.26        70.52 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        4.67         8.05         0.16        35.01        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        4.47         9.63         2.04        23.57         9.37        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.53         5.36         2.70         2.14         0.92         9.17 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
        8.91         6.71         7.17        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       20.94         7.43         3.58        26.79         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.58         4.18         1.08         0.76         4.90         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
        2.83         8.52         5.95         6.81         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        0.43         9.37        11.21         3.52         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         6.71         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.12         4.54         3.91         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        0.49         7.36         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 
        4.77         4.96        22.68        34.75         3.91       108.82 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         4.34        13.78        10.39         7.59         3.39 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       53.79         1.28         6.41        15.06        22.52        14.70 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 
       35.64        19.50         0.95         9.17        10.85        15.72 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 
        3.19        10.59         0.30         0.56         3.48        11.77 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
        8.52        18.44        58.19         1.28        10.72         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 
        6.51        15.98        17.29         5.52        14.01        14.40 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 
        1.61        10.39         5.95        10.52         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        24.13         6.08         2.63 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       18.08        28.37        12.43        53.10        43.10         5.49 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
        9.11        14.83        14.27        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.91        20.58       127.56 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         6.21        30.54        21.63        11.97        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       15.85         9.11        14.53         3.98         3.39         9.44 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.28        13.61         6.38        59.41        43.20        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       11.54        10.95        11.77        34.52        11.74        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.01        15.09        11.97         0.95         6.18 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.74         3.25         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
        5.39         2.89        16.50        26.33         2.04        28.90 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.02        58.78        23.11         7.10         1.15        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.93         6.12        12.43         0.99         1.94 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.75        17.82         7.63         5.88         7.13        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 
        7.96         3.75         3.39         9.86        19.10        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 
        5.49         3.91         9.93        26.07        16.31         4.27 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.00         0.82         9.90        13.35         3.65        18.28 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 
       13.97         6.41        11.77        21.86         8.61         0.43 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 
       14.27         3.39        10.75         9.07         5.95        12.95 
TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
        4.64        25.38         3.48         7.13        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
        4.08        16.47         7.00         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.64         4.73         7.96         1.78         6.51         5.39 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
        5.29         5.42        10.03        13.87         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
        7.10         9.37         9.40        14.86         5.49         8.84 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        1.22         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        18.25        33.14        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.72        10.39        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.75         0.20         2.53         9.17 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
        8.32         7.59         8.45         1.18         1.51         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        0.13         0.66         6.74         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        3.91         9.04        15.55         2.53        11.77         9.80 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       14.20         7.79        13.64         4.21         8.52        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        5.42        15.35        21.07         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.83        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 
       12.23        20.78        14.99        15.95         7.33         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
        8.88         7.36        13.15         3.68        12.59        11.70 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85         5.42         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44         6.02         0.20        11.54         7.73 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        17.52         4.31        14.33         8.22         7.46 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.77         4.54         3.09         3.65         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

      11Q GAIN CNV 11Q GAIN WILD-TYPE 
              2.73               0.07 
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
             91.73             127.56 
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
             16.80               9.53 
[1] "2.7 - 91.7 (16.8)" "0.1 - 127.6 (9.5)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"11Q GAIN WILD-TYPE"       "11Q GAIN CNV" "11Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"       "11Q GAIN CNV" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
      "11Q GAIN CNV" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN CNV          1    6
  11Q GAIN WILD-TYPE  217  328
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  FEMALE            1                217
  MALE              6                328
D21V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  11Q GAIN CNV                                   0                   1
  11Q GAIN WILD-TYPE                             8                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  11Q GAIN CNV                                     6
  11Q GAIN WILD-TYPE                             520
D21V5, multiclass
                                 clus
vv                                11Q GAIN CNV 11Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0                  8
  TREATED PRIMARY GBM                        1                 17
  UNTREATED PRIMARY (DE NOVO) GBM            6                520
D21V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN CNV          6    1
  11Q GAIN WILD-TYPE  375  170
     clus
vv    11Q GAIN CNV 11Q GAIN WILD-TYPE
  NO             6                375
  YES            1                170

Clustering(22) Variable = 12p gain
D22V1, survival
                    sevent
clus2                  0   1
  12P GAIN CNV        13  28
  12P GAIN WILD-TYPE 120 391
      12P GAIN CNV 12P GAIN WILD-TYPE 
                41                511 
      12P GAIN CNV 12P GAIN WILD-TYPE 
                28                391 
$`12P GAIN CNV`
TCGA-02-0001 TCGA-02-0024 TCGA-02-0051 TCGA-02-0054 TCGA-02-0070 TCGA-02-0087 
        9.14        53.06        15.06         6.54        25.05        57.76 
TCGA-02-0266 TCGA-02-0271 TCGA-06-0151 TCGA-06-0162 TCGA-06-0184 TCGA-06-0187 
       17.69        14.47        46.59         2.56        40.37        26.33 
TCGA-06-0877 TCGA-06-1086 TCGA-06-1087 TCGA-06-2561 TCGA-06-5415 TCGA-06-6389 
        6.71         6.35         3.58         9.27         8.55         7.76 
TCGA-06-6694 TCGA-08-0246 TCGA-08-0516 TCGA-12-0691 TCGA-12-0776 TCGA-12-0778 
        7.36         3.91        18.44         6.08         9.11        14.83 
TCGA-12-1090 TCGA-12-1098 TCGA-14-0790 TCGA-14-1396 TCGA-14-1453 TCGA-14-1823 
        6.21         3.98        13.74         1.12         1.15        17.82 
TCGA-14-2554 TCGA-15-1449 TCGA-16-1460 TCGA-19-1787 TCGA-27-1838 TCGA-28-1756 
       17.49         5.49         6.41        12.66        11.51         2.83 
TCGA-28-2506 TCGA-28-5218 TCGA-32-4208 TCGA-32-5222 TCGA-74-6577 
        6.74         4.21        13.15         5.42         4.31 

$`12P GAIN WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 
       82.55        20.61        55.86        77.62        20.12        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0052 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
       12.59         2.50        19.86         8.35         9.57         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
       19.73        26.43        28.70         5.49        10.19        20.84 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
       27.22        89.72        22.72         0.23        51.29         8.81 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.93         3.48        26.99        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       23.15        92.61        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0269 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       16.90        10.75         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.86         7.69        10.62         0.16        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 
       20.09        16.70         9.80         7.82        19.46        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.79         8.65         3.19         5.46         9.44        11.80 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       56.84        10.65         5.29        19.04         3.12        13.02 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
        0.23         2.20         2.73        51.32         1.97        53.98 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       19.00         2.53        37.02        28.47        14.93        10.29 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       18.28         4.67         7.04         2.60         0.39         6.44 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        5.46         3.88         4.96        11.84         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 
       22.49         0.33        18.02        10.32        11.80        14.96 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
       10.29         5.52         0.26        70.52         4.67         8.05 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        0.16        35.01        12.33         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.04        23.57         9.37        22.29        19.53         5.36 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 
        2.70         2.14         0.92         9.17         8.91         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1800 
       22.98         5.85         5.42        20.94         7.43        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
        8.65         7.86        13.58         4.18         1.08         0.76 
TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        4.90         2.83         8.52         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43         9.37        11.21         3.52         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        4.54         8.81         8.98         6.71         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        6.12         4.54         3.91         5.36         1.45         0.49 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.28        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       22.68        34.75       108.82         1.74         4.34        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       10.39         7.59         3.39        53.79         1.28         6.41 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        9.17        10.85        15.72         3.19        10.59         0.30 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 
        0.56         3.48        11.77         8.52        58.19         1.28 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.72         4.80         6.51        15.98        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 
       14.01        14.40         1.61        10.39         5.95        10.52 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        2.63        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
        5.49        14.27        91.73        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.91        20.58       127.56 
TCGA-12-1089 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        5.82        30.54        21.63        11.97        11.38        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
        9.11        14.53         3.39         9.44        25.28        13.61 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
        6.38        59.41        43.20        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       11.77        34.52        11.74        13.08         3.22         2.01 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
       15.09        11.97         0.95         6.18        23.05         2.24 
TCGA-14-0789 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 
       11.24         3.25         1.35         5.39         2.89        16.50 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       26.33         2.04        28.90        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.38         3.75        32.02        58.78        23.11         7.10 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
       30.15         0.92        40.93         6.12        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2555 
        1.94        17.75         7.63         5.88         7.13         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 TCGA-16-0846 
        3.75         3.39         9.86        19.10        53.19         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        9.93        26.07        16.31         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-19-0955 
        9.90        13.35         3.65        18.28        13.97        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       21.86         8.61         0.43        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 
        9.07         5.95        12.95         4.64        25.38         3.48 
TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
        7.13         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
        7.53         0.16         4.08        16.47         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        11.28         8.02        18.64         4.73         7.96 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 
        1.78         6.51         5.39         5.29         5.42        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       13.87         9.73        31.33         7.10         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       21.30        30.05        14.04        24.72        10.39        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.17         8.32         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        1.51         0.13         0.66         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        3.91         9.04        15.55         2.53        11.77         9.80 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
       14.20         7.79        13.64         8.52        10.49         5.42 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
       15.35        21.07         0.49         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        1.18         4.67        12.69        14.83        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 
       20.78        14.99        15.95         7.33         8.84         8.88 
TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 
        7.36         3.68        12.59        11.70        10.85         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44         6.02 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6578 
        0.20        11.54         7.73         3.45        17.52        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.46         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.32        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

      12P GAIN CNV 12P GAIN WILD-TYPE 
              1.12               0.07 
      12P GAIN CNV 12P GAIN WILD-TYPE 
             57.76             127.56 
      12P GAIN CNV 12P GAIN WILD-TYPE 
              8.55               9.73 
[1] "1.1 - 57.8 (8.6)"  "0.1 - 127.6 (9.7)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
      "12P GAIN CNV" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "12P GAIN CNV"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"12P GAIN WILD-TYPE"       "12P GAIN CNV" "12P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"       "12P GAIN CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
      "12P GAIN CNV" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN CNV         17   24
  12P GAIN WILD-TYPE  201  310
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  FEMALE           17                201
  MALE             24                310
D22V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  12P GAIN CNV                                   1                   1
  12P GAIN WILD-TYPE                             7                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  12P GAIN CNV                                    39
  12P GAIN WILD-TYPE                             487
D22V5, multiclass
                                 clus
vv                                12P GAIN CNV 12P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              1                  7
  TREATED PRIMARY GBM                        1                 17
  UNTREATED PRIMARY (DE NOVO) GBM           39                487
D22V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN CNV         30   11
  12P GAIN WILD-TYPE  351  160
     clus
vv    12P GAIN CNV 12P GAIN WILD-TYPE
  NO            30                351
  YES           11                160

Clustering(23) Variable = 12q gain
D23V1, survival
                    sevent
clus2                  0   1
  12Q GAIN CNV        10  21
  12Q GAIN WILD-TYPE 123 398
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                31                521 
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                21                398 
$`12Q GAIN CNV`
TCGA-02-0001 TCGA-02-0051 TCGA-02-0054 TCGA-02-0060 TCGA-02-0070 TCGA-02-0087 
        9.14        15.06         6.54         6.02        25.05        57.76 
TCGA-02-0271 TCGA-06-0151 TCGA-06-0877 TCGA-06-1086 TCGA-06-1087 TCGA-06-2561 
       14.47        46.59         6.71         6.35         3.58         9.27 
TCGA-06-5415 TCGA-08-0246 TCGA-12-0691 TCGA-12-0778 TCGA-12-1098 TCGA-14-0790 
        8.55         3.91         6.08        14.83         3.98        13.74 
TCGA-14-1396 TCGA-14-1453 TCGA-14-1823 TCGA-14-2554 TCGA-15-1449 TCGA-19-1786 
        1.12         1.15        17.82        17.49         5.49         7.13 
TCGA-19-1787 TCGA-27-1838 TCGA-28-2506 TCGA-28-5218 TCGA-32-4208 TCGA-32-5222 
       12.66        11.51         6.74         4.21        13.15         5.42 
TCGA-74-6577 
        4.31 

$`12Q GAIN WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0052 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
        3.19        12.59         2.50        19.86         8.35         9.57 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
       19.73        26.43        28.70         5.49        10.19        20.84 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
       27.22        89.72        22.72         0.23        51.29         8.81 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.93         3.48        26.99        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       23.15        92.61        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       16.90        17.69        10.75         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.29        15.42        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        32.48        10.52        18.74        14.07        23.05 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       22.16        10.75         0.20         9.21         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        16.70         9.80         7.82        19.46 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         2.56        56.84        10.65         5.29        19.04 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.12        13.02         0.23         2.20         2.73        51.32 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        1.97        53.98        19.00         2.53        40.37        37.02 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       26.33        28.47        14.93        10.29        18.28         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        7.04         2.60         0.39         6.44         5.46         3.88 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        4.96        11.84         0.20        12.43        22.49         0.33 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       18.02        10.32        11.80        14.96        10.29         5.52 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
        0.26        70.52         4.67         8.05         0.16        35.01 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.33         3.22         4.47         9.63         2.04        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        9.37        22.29        19.53         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        0.92         9.17         8.91         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
        5.42        20.94         7.43        26.79         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 
       13.58         4.18         1.08         0.76         4.90         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
        8.52         5.95         6.81         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        9.37        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.98         6.71         2.73         3.75         6.12         4.54 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        3.91         7.76         5.36         1.45         0.49         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.28        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       22.68        34.75       108.82         1.74         4.34        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       10.39         7.59         3.39        53.79         1.28         6.41 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        9.17        10.85        15.72         3.19        10.59         0.30 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
        0.56         3.48        11.77         8.52        18.44        58.19 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
        1.28        10.72         4.80         6.51        15.98        17.29 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
        5.52        14.01        14.40         1.61        10.39         5.95 
TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
       10.52         7.17        65.88         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
       24.13         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
       43.10         5.49         9.11        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 
       18.48        10.62        23.51        27.78        38.76         8.91 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.56         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 
       11.97        11.38        15.85         9.11        14.53         3.39 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
        9.44        25.28        13.61         6.38        59.41        43.20 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       25.78        11.54        10.95        11.77        34.52        11.74 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 
       13.08         3.22         2.01        15.09        11.97         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0812 TCGA-14-0813 
        6.18        23.05         2.24        11.24         3.25         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
        5.39         2.89        16.50        26.33         2.04        28.90 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 
       15.95        19.30         0.79         1.38         3.75        32.02 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       58.78        23.11         7.10        30.15         0.92        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 
        6.12        12.43         0.99         1.94        17.75         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 
        5.88         7.13         7.96         3.75         3.39         9.86 
TCGA-15-1446 TCGA-15-1447 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 
       19.10        53.19         3.91         9.93        26.07        16.31 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.27        29.00         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       18.28        13.97         6.41        11.77        21.86         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1789 TCGA-19-1791 
       12.95         4.64        25.38         3.48         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       16.47         7.00         7.04         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.64         4.73         7.96         1.78         6.51         5.39 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
        5.29         5.42        10.03        13.87         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
        7.10         9.37         9.40        14.86         5.49         8.84 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        1.22         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        18.25        33.14        21.30        30.05        14.04 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.72        10.39        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.75         0.20         2.53         9.17         8.32 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.59         8.45         1.18         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.55         2.53        11.77         9.80        14.20         7.79 
TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
       13.64         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4210 
       15.95         7.33         8.84         8.88         7.36         3.68 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       12.59        11.70        10.85         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44         6.02         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        7.73         3.45        17.52        14.33         8.22         7.46 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.77         4.54         3.09         3.65         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

      12Q GAIN CNV 12Q GAIN WILD-TYPE 
              1.12               0.07 
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
             57.76             127.56 
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
              7.13               9.73 
[1] "1.1 - 57.8 (7.1)"  "0.1 - 127.6 (9.7)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "12Q GAIN CNV"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
      "12Q GAIN CNV"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "12Q GAIN CNV"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
      "12Q GAIN CNV"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "12Q GAIN CNV"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
      "12Q GAIN CNV"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"12Q GAIN WILD-TYPE"       "12Q GAIN CNV" "12Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"       "12Q GAIN CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
      "12Q GAIN CNV" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN CNV         15   16
  12Q GAIN WILD-TYPE  203  318
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  FEMALE           15                203
  MALE             16                318
D23V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  12Q GAIN CNV                                   1                   0
  12Q GAIN WILD-TYPE                             7                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  12Q GAIN CNV                                    30
  12Q GAIN WILD-TYPE                             496
D23V5, multiclass
                                 clus
vv                                12Q GAIN CNV 12Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              1                  7
  TREATED PRIMARY GBM                        0                 18
  UNTREATED PRIMARY (DE NOVO) GBM           30                496
D23V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN CNV         24    7
  12Q GAIN WILD-TYPE  357  164
     clus
vv    12Q GAIN CNV 12Q GAIN WILD-TYPE
  NO            24                357
  YES            7                164

Clustering(24) Variable = 13q gain
D24V1, survival
                    sevent
clus2                  0   1
  13Q GAIN CNV         1   2
  13Q GAIN WILD-TYPE 132 417
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                 3                549 
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                 2                417 
$`13Q GAIN CNV`
TCGA-14-0817 TCGA-19-1390 TCGA-26-5136 
        5.39        25.38         1.22 

$`13Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.70         3.19        15.06        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       28.70        25.05         5.49        10.19        20.84        27.22 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       89.72        22.72         0.23        51.29         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.93         3.48        26.99        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       23.15        92.61        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.90        17.69        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.86         7.69        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        0.16        15.91        25.71         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.24 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
       16.18         3.35        16.80        12.92        15.29        15.42 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       16.18         2.70         0.26         4.04        47.31         0.10 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        3.55        22.72        32.48        10.52        18.74        14.07 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       23.05        22.16        10.75         0.20         9.21         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        16.70         9.80         7.82 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
        5.46         9.44        11.80         2.56        56.84        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.29        19.04         3.12        13.02         0.23         2.20 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        2.73        51.32         1.97        53.98        19.00         2.53 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       40.37        37.02        26.33        28.47        14.93        10.29 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       18.28         4.67         7.04         2.60         0.39         6.44 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        5.46         3.88         4.96        11.84         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 
       22.49         0.33        18.02        10.32        11.80        14.96 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
       10.29         5.52         0.26        70.52         4.67         8.05 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        0.16        35.01        12.33         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.04        23.57         9.37        22.29        19.53         5.36 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.14         0.92         9.17         8.91         6.71 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        22.98         5.85         5.42        20.94         7.43 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        6.35         3.58        26.79         8.65         7.86        13.58 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
        4.18         1.08         0.76         4.90         9.27         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
        8.52         5.95         6.81         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        9.37        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         6.71         2.73         3.75         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        4.96        22.68        34.75         3.91       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        4.34        13.78        10.39         7.59         3.39        53.79 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       19.50         0.95         9.17        10.85        15.72         3.19 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       10.59         0.30         0.56         3.48        11.77         8.52 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       18.44        58.19         1.28        10.72         4.80         6.51 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
       15.98        17.29         5.52        14.01        14.40         1.61 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       10.39         5.95        10.52         7.17        65.88         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        24.13         6.08         2.63        18.08 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.37        12.43        53.10        43.10         5.49         9.11 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.83        14.27        91.73        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.91        20.58       127.56 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         6.21        30.54        21.63        11.97        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       15.85         9.11        14.53         3.98         3.39         9.44 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.28        13.61         6.38        59.41        43.20        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       11.54        10.95        11.77        34.52        11.74        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.01        15.09        11.97         0.95         6.18 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.74         3.25         1.35 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 
        2.89        16.50        26.33         2.04        28.90        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       19.30         0.79         1.38         1.12         3.75        32.02 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
       58.78        23.11         7.10         1.15        30.15         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
       40.93         6.12        12.43         0.99         1.94        17.75 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.82         7.63         5.88         7.13        17.49         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 
        3.75         3.39         9.86        19.10        53.19         5.49 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 
        3.91         9.93        26.07        16.31         4.27        29.00 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        0.82         9.90        13.35         3.65        18.28        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
        6.41        11.77        21.86         8.61         0.43        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 
        3.39        10.75         9.07         5.95        12.95         4.64 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.48         7.13        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        16.47 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73         7.96         1.78         6.51         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
        5.42        10.03        13.87         9.73        31.33         7.10 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5139 
        9.37         9.40        14.86         5.49         8.84         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       10.39        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.75         0.20         2.53         9.17         8.32         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.45         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        6.74         4.77         7.30         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.55         2.53        11.77         9.80        14.20         7.79 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         4.21         8.52        10.49         5.42        15.35 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.83        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       14.99        15.95         7.33         8.84         8.88         7.36 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       13.15         3.68        12.59        11.70        10.85         5.42 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
        6.02         0.20        11.54         7.73         3.45        17.52 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        4.31        14.33         8.22         7.46         4.77         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.09         3.65         9.14         2.53        10.78        16.67 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.32        20.94 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03         0.23         9.24         7.69         7.76 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.69         0.07 

      13Q GAIN CNV 13Q GAIN WILD-TYPE 
              1.22               0.07 
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
             25.38             127.56 
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
              5.39               9.57 
[1] "1.2 - 25.4 (5.4)"  "0.1 - 127.6 (9.6)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
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        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
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        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
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        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
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        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
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        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
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        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
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        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
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        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
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        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
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        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
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        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
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        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
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        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
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        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
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        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
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        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
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        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
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        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
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        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
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        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
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        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
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        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
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        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
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        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
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        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
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        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
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        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
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        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
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        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
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        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
      "13Q GAIN CNV" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"13Q GAIN WILD-TYPE"       "13Q GAIN CNV" "13Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D24V2, continuous
D24V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN CNV          3    0
  13Q GAIN WILD-TYPE  215  334
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  FEMALE            3                215
  MALE              0                334
D24V4, continuous
[1] "Remove cluster labels:" "13Q GAIN CNV"          
clus
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                 2                407 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0051         TCGA-02-0052 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0054         TCGA-02-0055         TCGA-02-0057 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0058         TCGA-02-0059         TCGA-02-0060 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0064         TCGA-02-0068         TCGA-02-0069 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0070         TCGA-02-0071         TCGA-02-0074 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0075         TCGA-02-0079         TCGA-02-0080 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0083         TCGA-02-0084         TCGA-02-0085 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0086         TCGA-02-0087         TCGA-02-0089 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0099         TCGA-02-0102         TCGA-02-0104 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0106         TCGA-02-0107         TCGA-02-0111 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0113         TCGA-02-0114         TCGA-02-0115 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0116         TCGA-02-0289         TCGA-02-0290 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0317         TCGA-02-0321         TCGA-02-0324 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0325         TCGA-02-0326         TCGA-02-0330 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0332         TCGA-02-0337         TCGA-02-0338 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0125         TCGA-06-0126 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0138         TCGA-06-0139 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0141         TCGA-06-0143         TCGA-06-0149 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0162         TCGA-06-0164 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0168         TCGA-06-0169         TCGA-06-0171 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0174         TCGA-06-0175         TCGA-06-0176 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0177         TCGA-06-0179         TCGA-06-0182 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0190         TCGA-06-0192 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0195         TCGA-06-0208         TCGA-06-0211 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0214         TCGA-06-0216         TCGA-06-0221 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0238         TCGA-06-0241         TCGA-06-0644 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0646         TCGA-06-0648         TCGA-06-0743 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0744         TCGA-06-0745         TCGA-06-0747 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0750         TCGA-06-0875         TCGA-06-0876 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1805 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-2557         TCGA-06-2558         TCGA-06-2559 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-2561         TCGA-06-2562         TCGA-06-2563 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-2564         TCGA-06-2565         TCGA-06-2566 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-2567         TCGA-06-2569         TCGA-06-2570 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-5408         TCGA-06-5410         TCGA-06-5411 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-5412         TCGA-06-5413         TCGA-06-5414 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-5415         TCGA-06-5416         TCGA-06-5418 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-5858         TCGA-06-5859         TCGA-06-6388 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-6389         TCGA-06-6390         TCGA-06-6695 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-06-6697         TCGA-06-6700         TCGA-08-0244 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0245         TCGA-08-0246         TCGA-08-0344 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0345         TCGA-08-0346         TCGA-08-0347 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0348         TCGA-08-0350         TCGA-08-0351 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0353         TCGA-08-0354         TCGA-08-0355 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0356         TCGA-08-0357         TCGA-08-0358 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0375         TCGA-08-0380         TCGA-08-0386 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0389         TCGA-08-0390         TCGA-08-0509 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0517         TCGA-08-0518         TCGA-08-0521 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0524         TCGA-08-0525         TCGA-08-0529 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-08-0531         TCGA-12-0615         TCGA-12-0616 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0618         TCGA-12-0619         TCGA-12-0620 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0653         TCGA-12-0656         TCGA-12-0662 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0670         TCGA-12-0688         TCGA-12-0691 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0692         TCGA-12-0703         TCGA-12-0769 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0772         TCGA-12-0773         TCGA-12-0775 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0776         TCGA-12-0778         TCGA-12-0780 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0827         TCGA-12-0828 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-0829         TCGA-12-1088         TCGA-12-1090 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1091         TCGA-12-1092         TCGA-12-1093 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1094         TCGA-12-1095         TCGA-12-1096 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1097         TCGA-12-1098         TCGA-12-1099 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5299 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-12-5301         TCGA-14-0736         TCGA-14-0740 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0783         TCGA-14-0786         TCGA-14-0787 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0789         TCGA-14-0790         TCGA-14-0812 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0813         TCGA-14-0862         TCGA-14-0865 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1456         TCGA-14-1458         TCGA-14-1459 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1795         TCGA-14-1821         TCGA-14-1823 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-1825         TCGA-14-1827         TCGA-14-1829 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-2554         TCGA-14-2555         TCGA-14-3477 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-14-4157         TCGA-15-0742         TCGA-15-1446 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-15-1447         TCGA-15-1449         TCGA-19-0960 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-0962         TCGA-19-0964         TCGA-19-1386 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-1387         TCGA-19-1389         TCGA-19-1392 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-2619         TCGA-19-2620         TCGA-19-2623 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-2631         TCGA-19-5947         TCGA-19-5950 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5954 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-5956         TCGA-19-5958         TCGA-19-5959 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-19-5960         TCGA-26-1438         TCGA-26-1440 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-26-5139         TCGA-26-6173         TCGA-26-6174 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-1830         TCGA-27-1831         TCGA-27-1832 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-1833         TCGA-27-1834         TCGA-27-1835 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-1836         TCGA-27-1837         TCGA-27-1838 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-2518         TCGA-27-2519         TCGA-27-2521 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-2523         TCGA-27-2524         TCGA-27-2526 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-27-2527         TCGA-27-2528         TCGA-28-1746 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1755         TCGA-28-1756 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-1757         TCGA-28-2502         TCGA-28-2506 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-2509         TCGA-28-2513         TCGA-28-2514 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-5204         TCGA-28-5207         TCGA-28-5208 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-5211         TCGA-28-5213         TCGA-28-5214 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-5215         TCGA-28-5216         TCGA-28-5219 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-32-1976         TCGA-32-1982 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-32-1986         TCGA-32-2615         TCGA-41-2571 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-41-2573         TCGA-41-2575         TCGA-74-6573 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-74-6575         TCGA-74-6577         TCGA-74-6578 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-74-6581         TCGA-74-6584         TCGA-76-4925 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-4926         TCGA-76-4928         TCGA-76-4929 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-4931         TCGA-76-4934         TCGA-76-4935 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6191         TCGA-76-6192         TCGA-76-6193 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6280         TCGA-76-6282         TCGA-76-6285 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6286         TCGA-76-6656         TCGA-76-6657 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6661         TCGA-76-6662         TCGA-76-6663 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-76-6664         TCGA-81-5910 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  13Q GAIN CNV                                   0                   0
  13Q GAIN WILD-TYPE                             8                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  13Q GAIN CNV                                     3
  13Q GAIN WILD-TYPE                             523
D24V5, multiclass
                                 clus
vv                                13Q GAIN CNV 13Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0                  8
  TREATED PRIMARY GBM                        0                 18
  UNTREATED PRIMARY (DE NOVO) GBM            3                523
D24V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN CNV          0    3
  13Q GAIN WILD-TYPE  381  168
     clus
vv    13Q GAIN CNV 13Q GAIN WILD-TYPE
  NO             0                381
  YES            3                168

Clustering(25) Variable = 14q gain
D25V1, survival
                    sevent
clus2                  0   1
  14Q GAIN CNV         1   6
  14Q GAIN WILD-TYPE 132 413
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                 7                545 
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                 6                413 
$`14Q GAIN CNV`
TCGA-06-0151 TCGA-06-2569 TCGA-08-0510 TCGA-08-0514 TCGA-12-0776 TCGA-32-2495 
       46.59         0.43         3.48         8.52         9.11        14.99 
TCGA-32-2632 
        8.84 

$`14Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.70         3.19        15.06        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       28.70        25.05         5.49        10.19        20.84        27.22 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       89.72        22.72         0.23        51.29         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.93         3.48        26.99        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       23.15        92.61        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.90        17.69        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.86         7.69        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        0.16        15.91        25.71         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.24 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
       16.18         3.35        16.80        12.92        15.29        15.42 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       16.18         2.70         0.26         4.04        47.31         0.10 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        3.55        22.72        32.48        10.52        18.74        14.07 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       23.05        22.16        10.75         0.20         9.21         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        16.70         9.80         7.82 
TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       19.46        11.80        12.79         8.65         3.19         5.46 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         2.56        56.84        10.65         5.29 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.04         3.12        13.02         0.23         2.20         2.73 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       51.32         1.97        53.98        19.00         2.53        40.37 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       37.02        26.33        28.47        14.93        10.29        18.28 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.04         2.60         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        3.88         4.96        11.84         0.20        12.43        22.49 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 
        0.33        18.02        10.32        11.80        14.96        10.29 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
        5.52         0.26        70.52         4.67         8.05         0.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.01        12.33         3.22         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57         9.37        22.29        19.53         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.14         0.92         9.17         8.91         6.71         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       22.98         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        3.58        26.79         8.65         7.86        13.58         4.18 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08         0.76         4.90         9.27         2.83         8.52 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 
        5.95         6.81         5.98         4.37         9.37        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.52         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.12         4.54         3.91 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.76         5.36         1.45         0.49         7.36         8.28 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 
       12.85         4.77         1.55         4.77         4.96        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       34.75         3.91       108.82         1.74         4.34        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       10.39         7.59         3.39        53.79         1.28         6.41 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        9.17        10.85        15.72         3.19        10.59         0.30 
TCGA-08-0509 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
        0.56        11.77        18.44        58.19         1.28        10.72 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         6.51        15.98        17.29         5.52        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 
       14.40         1.61        10.39         5.95        10.52         7.17 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       65.88         0.10        38.17        25.97        24.13         6.08 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        2.63        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        5.49        14.83        14.27        91.73        24.76        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       10.62        23.51        27.78        38.76         8.91        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
      127.56         5.82         6.21        30.54        21.63        11.97 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
       11.38        15.85         9.11        14.53         3.98         3.39 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
        9.44        25.28        13.61         6.38        59.41        43.20 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       25.78        11.54        10.95        11.77        34.52        11.74 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 
       13.08         3.22         2.01        15.09        11.97         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 
        6.18        23.05         2.24        11.24        13.74         3.25 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 
        1.35         5.39         2.89        16.50        26.33         2.04 
TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
       28.90        15.95        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.02        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
       30.15         0.92        40.93         6.12        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        1.94        17.75        17.82         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 
       17.49         7.96         3.75         3.39         9.86        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 
       53.19         5.49         3.91         9.93        26.07        16.31 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.27        29.00         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       18.28        13.97         6.41        11.77        21.86         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 
       12.95         4.64        25.38         3.48         7.13        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        0.16         4.08        16.47         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        6.51         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
        9.73        31.33         7.10         9.37         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.84         1.22         1.58         7.92         2.30 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        4.80        16.57         9.86        18.25        33.14        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.72        10.39        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.17         8.32         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.51         2.83         0.13         0.66         6.74         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26         3.91         9.04        15.55         2.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77         9.80        14.20         7.79        13.64         4.21 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        8.52        10.49         5.42        15.35        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2615 TCGA-32-2616 
       14.83        16.93        12.23        20.78        15.95         7.33 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
        8.88         7.36        13.15         3.68        12.59        11.70 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85         5.42         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44         6.02         0.20        11.54         7.73 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        17.52         4.31        14.33         8.22         7.46 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.77         4.54         3.09         3.65         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

      14Q GAIN CNV 14Q GAIN WILD-TYPE 
              0.43               0.07 
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
             46.59             127.56 
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
              8.84               9.63 
[1] "0.4 - 46.6 (8.8)"  "0.1 - 127.6 (9.6)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
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        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
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        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
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        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
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        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
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        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
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        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
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        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
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        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
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        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
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        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
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        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
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        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
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        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
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        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
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        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
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        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
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        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"14Q GAIN WILD-TYPE"       "14Q GAIN CNV" "14Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"       "14Q GAIN CNV" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
      "14Q GAIN CNV" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN CNV          4    3
  14Q GAIN WILD-TYPE  214  331
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  FEMALE            4                214
  MALE              3                331
D25V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  14Q GAIN CNV                                   1                   1
  14Q GAIN WILD-TYPE                             7                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  14Q GAIN CNV                                     5
  14Q GAIN WILD-TYPE                             521
D25V5, multiclass
                                 clus
vv                                14Q GAIN CNV 14Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              1                  7
  TREATED PRIMARY GBM                        1                 17
  UNTREATED PRIMARY (DE NOVO) GBM            5                521
D25V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN CNV          4    3
  14Q GAIN WILD-TYPE  377  168
     clus
vv    14Q GAIN CNV 14Q GAIN WILD-TYPE
  NO             4                377
  YES            3                168

Clustering(26) Variable = 15q gain
D26V1, survival
                    sevent
clus2                  0   1
  15Q GAIN CNV         1   5
  15Q GAIN WILD-TYPE 132 414
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                 6                546 
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                 5                414 
$`15Q GAIN CNV`
TCGA-02-0051 TCGA-06-0151 TCGA-06-0166 TCGA-14-1823 TCGA-14-3477 TCGA-28-5218 
       15.06        46.59         5.29        17.82         3.75         4.21 

$`15Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
       14.70         3.19        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.29        15.42        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        32.48        10.52        18.74        14.07        23.05 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       22.16        10.75         0.20         9.21         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        16.70         9.80         7.82        19.46 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 
       11.80         2.56        56.84        10.65        19.04         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       13.02         0.23         2.20         2.73        51.32         1.97 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       53.98        19.00         2.53        40.37        37.02        26.33 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       28.47        14.93        10.29        18.28         4.67         7.04 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        2.60         0.39         6.44         5.46         3.88         4.96 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
       11.84         0.20        12.43        22.49         0.33        18.02 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       10.32        11.80        14.96        10.29         5.52         0.26 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
       70.52         4.67         8.05         0.16        35.01        12.33 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        3.22         4.47         9.63         2.04        23.57         9.37 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       22.29        19.53         5.36         2.70         2.14         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        9.17         8.91         6.71         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 
        5.42        20.94         7.43         6.35         3.58        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
        8.65         7.86        13.58         4.18         1.08         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.90         9.27         2.83         8.52         5.95         6.81 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        5.98         4.37         0.43         9.37        11.21         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.12         4.54         3.91         7.76 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.36         1.45         0.49         7.36         8.28        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 
        4.77         1.55         4.77         4.96        22.68        34.75 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
        3.91       108.82         1.74         4.34        13.78        10.39 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
        7.59         3.39        53.79         1.28         6.41        15.06 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       22.52        14.70        35.64        19.50         0.95         9.17 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       10.85        15.72         3.19        10.59         0.30         0.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
        3.48        11.77         8.52        18.44        58.19         1.28 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.72         4.80         6.51        15.98        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 
       14.01        14.40         1.61        10.39         5.95        10.52 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.10         5.49         9.11        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.76        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.91        20.58       127.56         5.82         6.21        30.54 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.63        11.97        11.38        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
        3.98         3.39         9.44        25.28        13.61         6.38 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.41        43.20        25.78        11.54        10.95        11.77 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       34.52        11.74        13.08         3.22         2.01        15.09 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.18        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 
       13.74         3.25         1.35         5.39         2.89        16.50 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       26.33         2.04        28.90        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 
       12.43         0.99         1.94        17.75         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 
        7.13        17.49         7.96         3.39         9.86        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 
       53.19         5.49         3.91         9.93        26.07        16.31 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.27        29.00         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       18.28        13.97         6.41        11.77        21.86         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 
       12.95         4.64        25.38         3.48         7.13        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        0.16         4.08        16.47         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        6.51         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
        9.73        31.33         7.10         9.37         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.84         1.22         1.58         7.92         2.30 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        4.80        16.57         9.86        18.25        33.14        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.72        10.39        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.17         8.32         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.51         2.83         0.13         0.66         6.74         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26         3.91         9.04        15.55         2.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 
       11.77         9.80        14.20         7.79        13.64         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
       10.49         5.42        15.35        21.07         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.83 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 
       16.93        12.23        20.78        14.99        15.95         7.33 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
        8.84         8.88         7.36        13.15         3.68        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       11.70        10.85         5.42         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44         6.02         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        7.73         3.45        17.52         4.31        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.46         4.77         4.54         3.09         3.65         9.14 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        10.78        16.67         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.32        20.94         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.24         7.69         7.76         1.61        17.69         0.07 

      15Q GAIN CNV 15Q GAIN WILD-TYPE 
              3.75               0.07 
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
             46.59             127.56 
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
            10.175              9.550 
[1] "3.8 - 46.6 (10.2)" "0.1 - 127.6 (9.6)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"       "15Q GAIN CNV" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"       "15Q GAIN CNV" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"       "15Q GAIN CNV" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
      "15Q GAIN CNV" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
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        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"15Q GAIN WILD-TYPE"       "15Q GAIN CNV" "15Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D26V2, continuous
D26V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN CNV          3    3
  15Q GAIN WILD-TYPE  215  331
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  FEMALE            3                215
  MALE              3                331
D26V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  15Q GAIN CNV                                   1                   0
  15Q GAIN WILD-TYPE                             7                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  15Q GAIN CNV                                     5
  15Q GAIN WILD-TYPE                             521
D26V5, multiclass
                                 clus
vv                                15Q GAIN CNV 15Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              1                  7
  TREATED PRIMARY GBM                        0                 18
  UNTREATED PRIMARY (DE NOVO) GBM            5                521
D26V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN CNV          3    3
  15Q GAIN WILD-TYPE  378  168
     clus
vv    15Q GAIN CNV 15Q GAIN WILD-TYPE
  NO             3                378
  YES            3                168

Clustering(27) Variable = 16p gain
D27V1, survival
                    sevent
clus2                  0   1
  16P GAIN CNV         6  11
  16P GAIN WILD-TYPE 127 408
      16P GAIN CNV 16P GAIN WILD-TYPE 
                17                535 
      16P GAIN CNV 16P GAIN WILD-TYPE 
                11                408 
$`16P GAIN CNV`
TCGA-02-0051 TCGA-02-0069 TCGA-02-0113 TCGA-06-1086 TCGA-06-2558 TCGA-06-2567 
       15.06        28.70        92.61         6.35         0.76         4.37 
TCGA-08-0245 TCGA-08-0510 TCGA-08-0516 TCGA-12-0827 TCGA-12-1602 TCGA-14-1454 
       34.75         3.48        18.44        38.76         6.38        30.15 
TCGA-14-3477 TCGA-15-1447 TCGA-16-0850 TCGA-28-2506 TCGA-41-2573 
        3.75        53.19        16.31         6.74         8.94 

$`16P GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
       14.70         3.19        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 
        8.35         9.57         6.02        19.73        26.43        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
        5.49        10.19        20.84        27.22        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
        0.23        51.29         8.81        57.76        16.93         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 
       26.99        65.00        11.67        17.65        23.15        99.95 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.90        17.69        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.86         7.69        10.62         0.16        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.24        16.18         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.29        15.42        16.18         2.70         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
        4.04        47.31         0.10         3.55        22.72        32.48 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       10.52        18.74        14.07        23.05        22.16        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20         9.21         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       16.70         9.80         7.82        19.46        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.79         8.65         3.19         5.46         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        2.56        56.84        10.65         5.29        19.04         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       13.02         0.23         2.20         2.73        51.32         1.97 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       53.98        19.00         2.53        40.37        37.02        26.33 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       28.47        14.93        10.29        18.28         4.67         7.04 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        2.60         0.39         6.44         5.46         3.88         4.96 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
       11.84         0.20        12.43        22.49         0.33        18.02 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       10.32        11.80        14.96        10.29         5.52         0.26 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
       70.52         4.67         8.05         0.16        35.01        12.33 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        3.22         4.47         9.63         2.04        23.57         9.37 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       22.29        19.53         5.36         2.70         2.14         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        9.17         8.91         6.71         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
        5.42        20.94         7.43         3.58        26.79         8.65 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2559 TCGA-06-2561 
        7.86        13.58         4.18         1.08         4.90         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2569 
        2.83         8.52         5.95         6.81         5.98         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        9.37        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         6.71         2.73         3.75         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
        4.96        22.68         3.91       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        6.41        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        0.95         9.17        10.85        15.72         3.19        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 
        0.30         0.56        11.77         8.52        58.19         1.28 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.72         4.80         6.51        15.98        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 
       14.01        14.40         1.61        10.39         5.95        10.52 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.10         5.49         9.11        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 
       24.76        18.48        10.62        23.51        27.78         8.91 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.56         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       11.97        11.38        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3646 
        3.39         9.44        25.28        13.61        59.41        43.20 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       25.78        11.54        10.95        11.77        34.52        11.74 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 
       13.08         3.22         2.01        15.09        11.97         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 
        6.18        23.05         2.24        11.24        13.74         3.25 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 
        1.35         5.39         2.89        16.50        26.33         2.04 
TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
       28.90        15.95        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.02        58.78        23.11         7.10         1.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.93         6.12        12.43         0.99         1.94 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.75        17.82         7.63         5.88         7.13        17.49 
TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 
        7.96         3.39         9.86        19.10         5.49         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
        9.93        26.07         4.27        29.00         0.82         9.90 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       13.35         3.65        18.28        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       21.86         8.61         0.43        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 
        9.07         5.95        12.95         4.64        25.38         3.48 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        7.13        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        16.47         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        11.28         8.02        18.64         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        7.96         1.78         6.51         5.39         5.29         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
       10.03        13.87         9.73        31.33         7.10         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.84         1.22         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       10.39        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.75         0.20         2.53         9.17         8.32         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.45         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77         9.80        14.20         7.79        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        4.21         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.95         7.33         8.84         8.88         7.36        13.15 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.68        12.59        11.70        10.85         5.42         0.85 
TCGA-41-2572 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
       13.35         9.53         0.99         4.44         6.02         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        17.52         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.46         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.32        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

      16P GAIN CNV 16P GAIN WILD-TYPE 
              0.76               0.07 
      16P GAIN CNV 16P GAIN WILD-TYPE 
             92.61             127.56 
      16P GAIN CNV 16P GAIN WILD-TYPE 
             15.06               9.53 
[1] "0.8 - 92.6 (15.1)" "0.1 - 127.6 (9.5)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"16P GAIN WILD-TYPE"       "16P GAIN CNV" "16P GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "16P GAIN CNV" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"       "16P GAIN CNV" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN CNV         10    7
  16P GAIN WILD-TYPE  208  327
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  FEMALE           10                208
  MALE              7                327
D27V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  16P GAIN CNV                                   0                   1
  16P GAIN WILD-TYPE                             8                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  16P GAIN CNV                                    16
  16P GAIN WILD-TYPE                             510
D27V5, multiclass
                                 clus
vv                                16P GAIN CNV 16P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0                  8
  TREATED PRIMARY GBM                        1                 17
  UNTREATED PRIMARY (DE NOVO) GBM           16                510
D27V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN CNV         16    1
  16P GAIN WILD-TYPE  365  170
     clus
vv    16P GAIN CNV 16P GAIN WILD-TYPE
  NO            16                365
  YES            1                170

Clustering(28) Variable = 16q gain
D28V1, survival
                    sevent
clus2                  0   1
  16Q GAIN CNV         6  11
  16Q GAIN WILD-TYPE 127 408
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                17                535 
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                11                408 
$`16Q GAIN CNV`
TCGA-02-0051 TCGA-02-0069 TCGA-02-0113 TCGA-06-0410 TCGA-06-1086 TCGA-06-2558 
       15.06        28.70        92.61         4.67         6.35         0.76 
TCGA-08-0245 TCGA-08-0510 TCGA-08-0516 TCGA-12-0827 TCGA-14-1454 TCGA-14-3477 
       34.75         3.48        18.44        38.76        30.15         3.75 
TCGA-15-1447 TCGA-16-0850 TCGA-19-2620 TCGA-28-2506 TCGA-41-2573 
       53.19        16.31         4.87         6.74         8.94 

$`16Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
       14.70         3.19        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 
        8.35         9.57         6.02        19.73        26.43        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
        5.49        10.19        20.84        27.22        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
        0.23        51.29         8.81        57.76        16.93         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 
       26.99        65.00        11.67        17.65        23.15        99.95 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.90        17.69        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.86         7.69        10.62         0.16        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.24        16.18         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.29        15.42        16.18         2.70         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
        4.04        47.31         0.10         3.55        22.72        32.48 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       10.52        18.74        14.07        23.05        22.16        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20         9.21         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       16.70         9.80         7.82        19.46        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.79         8.65         3.19         5.46         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        2.56        56.84        10.65         5.29        19.04         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       13.02         0.23         2.20         2.73        51.32         1.97 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       53.98        19.00         2.53        40.37        37.02        26.33 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       28.47        14.93        10.29        18.28         4.67         7.04 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        2.60         0.39         6.44         5.46         3.88         4.96 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
       11.84         0.20        12.43        22.49         0.33        18.02 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       10.32        11.80        14.96        10.29         5.52         0.26 
TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
       70.52         8.05         0.16        35.01        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        4.47         9.63         2.04        23.57         9.37        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.53         5.36         2.70         2.14         0.92         9.17 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
        8.91         6.71         7.17        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       20.94         7.43         3.58        26.79         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       13.58         4.18         1.08         4.90         9.27         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
        8.52         5.95         6.81         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        9.37        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         6.71         2.73         3.75         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
        4.96        22.68         3.91       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        6.41        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        0.95         9.17        10.85        15.72         3.19        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 
        0.30         0.56        11.77         8.52        58.19         1.28 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.72         4.80         6.51        15.98        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 
       14.01        14.40         1.61        10.39         5.95        10.52 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.10         5.49         9.11        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 
       24.76        18.48        10.62        23.51        27.78         8.91 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.56         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       11.97        11.38        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
        3.39         9.44        25.28        13.61         6.38        59.41 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       43.20        25.78        11.54        10.95        11.77        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       11.74        13.08         3.22         2.01        15.09        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.18        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        3.25         1.35         5.39         2.89        16.50        26.33 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
        2.04        28.90        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.02        58.78        23.11         7.10 
TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
        1.15         0.92        40.93         6.12        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        1.94        17.75        17.82         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 
       17.49         7.96         3.39         9.86        19.10         5.49 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        3.91         9.93        26.07         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
       10.75         9.07         5.95        12.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.48         7.13        12.66         3.25         0.13         9.67 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        16.47         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        11.28         8.02        18.64         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        7.96         1.78         6.51         5.39         5.29         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
       10.03        13.87         9.73        31.33         7.10         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.84         1.22         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       10.39        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.75         0.20         2.53         9.17         8.32         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.45         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77         9.80        14.20         7.79        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        4.21         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.95         7.33         8.84         8.88         7.36        13.15 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.68        12.59        11.70        10.85         5.42         0.85 
TCGA-41-2572 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
       13.35         9.53         0.99         4.44         6.02         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        17.52         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.46         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.32        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

      16Q GAIN CNV 16Q GAIN WILD-TYPE 
              0.76               0.07 
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
             92.61             127.56 
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
             15.06               9.53 
[1] "0.8 - 92.6 (15.1)" "0.1 - 127.6 (9.5)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
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        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
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        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
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"16Q GAIN WILD-TYPE"       "16Q GAIN CNV" "16Q GAIN WILD-TYPE" 
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        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
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        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
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        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "16Q GAIN CNV" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"       "16Q GAIN CNV" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN CNV         11    6
  16Q GAIN WILD-TYPE  207  328
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  FEMALE           11                207
  MALE              6                328
D28V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  16Q GAIN CNV                                   0                   1
  16Q GAIN WILD-TYPE                             8                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  16Q GAIN CNV                                    16
  16Q GAIN WILD-TYPE                             510
D28V5, multiclass
                                 clus
vv                                16Q GAIN CNV 16Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0                  8
  TREATED PRIMARY GBM                        1                 17
  UNTREATED PRIMARY (DE NOVO) GBM           16                510
D28V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN CNV         15    2
  16Q GAIN WILD-TYPE  366  169
     clus
vv    16Q GAIN CNV 16Q GAIN WILD-TYPE
  NO            15                366
  YES            2                169

Clustering(29) Variable = 17p gain
D29V1, survival
                    sevent
clus2                  0   1
  17P GAIN CNV         2   9
  17P GAIN WILD-TYPE 131 410
      17P GAIN CNV 17P GAIN WILD-TYPE 
                11                541 
      17P GAIN CNV 17P GAIN WILD-TYPE 
                 9                410 
$`17P GAIN CNV`
TCGA-02-0003 TCGA-02-0281 TCGA-06-0151 TCGA-06-0173 TCGA-06-0195 TCGA-08-0510 
        4.73         3.98        46.59         0.23         7.04         3.48 
TCGA-12-5301 TCGA-16-0849 TCGA-28-2506 TCGA-28-5218 TCGA-32-4210 
        2.01        26.07         6.74         4.21         3.68 

$`17P GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        9.14        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       17.69        10.75        14.47        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.86         7.69        10.62         0.16        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 
       20.09        16.70         9.80         7.82        19.46        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.79         8.65         3.19         5.46         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        2.56        56.84        10.65         5.29        19.04         3.12 
TCGA-06-0171 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
       13.02         2.20         2.73        51.32         1.97        53.98 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
       19.00         2.53        40.37        37.02        26.33        28.47 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 
       14.93        10.29        18.28         4.67         2.60         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        6.44         5.46         3.88         4.96        11.84         0.20 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
       12.43        22.49         0.33        18.02        10.32        11.80 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       14.96        10.29         5.52         0.26        70.52         4.67 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        8.05         0.16        35.01        12.33         3.22         4.47 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.63         2.04        23.57         9.37        22.29        19.53 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        5.36         2.70         2.14         0.92         9.17         8.91 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        6.71         7.17        22.98         5.85         5.42        20.94 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
        7.43         6.35         3.58        26.79         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.58         4.18         1.08         0.76         4.90         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
        2.83         8.52         5.95         6.81         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        0.43         9.37        11.21         3.52         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         6.71         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.12         4.54         3.91         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        0.49         7.36         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 
        4.77         4.96        22.68        34.75         3.91       108.82 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         4.34        13.78        10.39         7.59         3.39 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       53.79         1.28         6.41        15.06        22.52        14.70 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 
       35.64        19.50         0.95         9.17        10.85        15.72 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 
        3.19        10.59         0.30         0.56        11.77         8.52 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       18.44        58.19         1.28        10.72         4.80         6.51 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
       15.98        17.29         5.52        14.01        14.40         1.61 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       10.39         5.95        10.52         7.17        65.88         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        24.13         6.08         2.63        18.08 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.37        12.43        53.10        43.10         5.49         9.11 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.83        14.27        91.73        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.91        20.58       127.56 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         6.21        30.54        21.63        11.97        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       15.85         9.11        14.53         3.98         3.39         9.44 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.28        13.61         6.38        59.41        43.20        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       11.54        10.95        11.77        34.52        11.74        13.08 
TCGA-12-5299 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        3.22        15.09        11.97         0.95         6.18        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
        2.24        11.24        13.74         3.25         1.35         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 
        2.89        16.50        26.33         2.04        28.90        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       19.30         0.79         1.38         1.12         3.75        32.02 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
       58.78        23.11         7.10         1.15        30.15         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
       40.93         6.12        12.43         0.99         1.94        17.75 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.82         7.63         5.88         7.13        17.49         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 
        3.75         3.39         9.86        19.10        53.19         5.49 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        3.91         9.93        16.31         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
       10.75         9.07         5.95        12.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.48         7.13        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        16.47 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73         7.96         1.78         6.51         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
        5.42        10.03        13.87         9.73        31.33         7.10 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        9.37         9.40        14.86         5.49         8.84         1.22 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.30         4.80        16.57         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       18.25        33.14        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.72        10.39        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.75         0.20         2.53         9.17         8.32 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.59         8.45         1.18         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.55         2.53        11.77         9.80        14.20         7.79 
TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
       13.64         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.95         7.33         8.84         8.88         7.36        13.15 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        11.70        10.85         5.42         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44         6.02         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        17.52         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.46         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.32        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

      17P GAIN CNV 17P GAIN WILD-TYPE 
              0.23               0.07 
      17P GAIN CNV 17P GAIN WILD-TYPE 
             46.59             127.56 
      17P GAIN CNV 17P GAIN WILD-TYPE 
              4.21               9.73 
[1] "0.2 - 46.6 (4.2)"  "0.1 - 127.6 (9.7)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"       "17P GAIN CNV" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "17P GAIN CNV" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"17P GAIN WILD-TYPE"       "17P GAIN CNV" "17P GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN CNV          4    7
  17P GAIN WILD-TYPE  214  327
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  FEMALE            4                214
  MALE              7                327
D29V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  17P GAIN CNV                                   1                   0
  17P GAIN WILD-TYPE                             7                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  17P GAIN CNV                                    10
  17P GAIN WILD-TYPE                             516
D29V5, multiclass
                                 clus
vv                                17P GAIN CNV 17P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              1                  7
  TREATED PRIMARY GBM                        0                 18
  UNTREATED PRIMARY (DE NOVO) GBM           10                516
D29V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN CNV          7    4
  17P GAIN WILD-TYPE  374  167
     clus
vv    17P GAIN CNV 17P GAIN WILD-TYPE
  NO             7                374
  YES            4                167

Clustering(30) Variable = 17q gain
D30V1, survival
                    sevent
clus2                  0   1
  17Q GAIN CNV         4  15
  17Q GAIN WILD-TYPE 129 404
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                19                533 
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                15                404 
$`17Q GAIN CNV`
TCGA-02-0003 TCGA-02-0281 TCGA-06-0151 TCGA-06-0173 TCGA-06-0195 TCGA-06-0410 
        4.73         3.98        46.59         0.23         7.04         4.67 
TCGA-06-0744 TCGA-08-0510 TCGA-12-0619 TCGA-12-1092 TCGA-12-5301 TCGA-14-1794 
       19.53         3.48        10.39        21.63         2.01         0.99 
TCGA-14-3477 TCGA-27-1835 TCGA-28-2506 TCGA-28-5218 TCGA-32-2495 TCGA-32-4210 
        3.75        21.30         6.74         4.21        14.99         3.68 
TCGA-41-3915 
        6.02 

$`17Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        9.14        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       17.69        10.75        14.47        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.86         7.69        10.62         0.16        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 
       20.09        16.70         9.80         7.82        19.46        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.79         8.65         3.19         5.46         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        2.56        56.84        10.65         5.29        19.04         3.12 
TCGA-06-0171 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
       13.02         2.20         2.73        51.32         1.97        53.98 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
       19.00         2.53        40.37        37.02        26.33        28.47 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 
       14.93        10.29        18.28         4.67         2.60         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        6.44         5.46         3.88         4.96        11.84         0.20 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
       12.43        22.49         0.33        18.02        10.32        11.80 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 
       14.96        10.29         5.52         0.26        70.52         8.05 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        0.16        35.01        12.33         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0745 TCGA-06-0747 
        2.04        23.57         9.37        22.29         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.14         0.92         9.17         8.91         6.71         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       22.98         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        3.58        26.79         8.65         7.86        13.58         4.18 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08         0.76         4.90         9.27         2.83         8.52 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95         6.81         5.98         4.37         0.43         9.37 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.21         3.52         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         6.71         2.73         3.75         6.12         4.54 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        3.91         7.76         5.36         1.45         0.49         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.28        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
       22.68        34.75         3.91       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        6.41        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        0.95         9.17        10.85        15.72         3.19        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
        0.30         0.56        11.77         8.52        18.44        58.19 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
        1.28        10.72         4.80         6.51        15.98        17.29 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0653 
        5.52        14.01        14.40         1.61         5.95        10.52 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.10         5.49         9.11        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.76        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.91        20.58       127.56         5.82         6.21        30.54 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       11.97        11.38        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
        3.39         9.44        25.28        13.61         6.38        59.41 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       43.20        25.78        11.54        10.95        11.77        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 
       11.74        13.08         3.22        15.09        11.97         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 
        6.18        23.05         2.24        11.24        13.74         3.25 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 
        1.35         5.39         2.89        16.50        26.33         2.04 
TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
       28.90        15.95        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.02        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 
       30.15         0.92        40.93         6.12        12.43         1.94 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.75        17.82         7.63         5.88         7.13        17.49 
TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 
        7.96         3.39         9.86        19.10        53.19         5.49 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 
        3.91         9.93        26.07        16.31         4.27        29.00 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        0.82         9.90        13.35         3.65        18.28        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
        6.41        11.77        21.86         8.61         0.43        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 
        3.39        10.75         9.07         5.95        12.95         4.64 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
       25.38         3.48         7.13        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       16.47         7.00         7.04         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.64         4.73         7.96         1.78         6.51         5.39 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
        5.29         5.42        10.03        13.87         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
        7.10         9.37         9.40        14.86         5.49         8.84 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        1.22         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
        9.86        18.25        33.14        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.72        10.39        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.75         0.20         2.53         9.17         8.32 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.59         8.45         1.18         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.55         2.53        11.77         9.80        14.20         7.79 
TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
       13.64         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2615 
       12.69        14.83        16.93        12.23        20.78        15.95 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 
        7.33         8.84         8.88         7.36        13.15        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       11.70        10.85         5.42         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        9.53         0.99         4.44         0.20        11.54         7.73 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        17.52         4.31        14.33         8.22         7.46 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.77         4.54         3.09         3.65         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

      17Q GAIN CNV 17Q GAIN WILD-TYPE 
              0.23               0.07 
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
             46.59             127.56 
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
              4.73               9.73 
[1] "0.2 - 46.6 (4.7)"  "0.1 - 127.6 (9.7)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
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        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
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        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
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        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
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        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
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        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
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        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
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"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
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        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
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        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"       "17Q GAIN CNV" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"17Q GAIN WILD-TYPE"       "17Q GAIN CNV" "17Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
      "17Q GAIN CNV" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN CNV          8   11
  17Q GAIN WILD-TYPE  210  323
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  FEMALE            8                210
  MALE             11                323
D30V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  17Q GAIN CNV                                   1                   1
  17Q GAIN WILD-TYPE                             7                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  17Q GAIN CNV                                    17
  17Q GAIN WILD-TYPE                             509
D30V5, multiclass
                                 clus
vv                                17Q GAIN CNV 17Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              1                  7
  TREATED PRIMARY GBM                        1                 17
  UNTREATED PRIMARY (DE NOVO) GBM           17                509
D30V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN CNV         13    6
  17Q GAIN WILD-TYPE  368  165
     clus
vv    17Q GAIN CNV 17Q GAIN WILD-TYPE
  NO            13                368
  YES            6                165

Clustering(31) Variable = 18p gain
D31V1, survival
                    sevent
clus2                  0   1
  18P GAIN CNV         9  17
  18P GAIN WILD-TYPE 124 402
      18P GAIN CNV 18P GAIN WILD-TYPE 
                26                526 
      18P GAIN CNV 18P GAIN WILD-TYPE 
                17                402 
$`18P GAIN CNV`
TCGA-02-0266 TCGA-02-0271 TCGA-06-0402 TCGA-06-1087 TCGA-06-1805 TCGA-06-2559 
       17.69        14.47         0.26         3.58         4.18         4.90 
TCGA-06-5858 TCGA-06-6698 TCGA-12-0657 TCGA-12-1090 TCGA-12-1092 TCGA-12-1598 
        6.12         4.77         0.10         6.21        21.63         9.44 
TCGA-12-1602 TCGA-12-5295 TCGA-14-0871 TCGA-14-1823 TCGA-15-1447 TCGA-19-1787 
        6.38        13.08        28.90        17.82        53.19        12.66 
TCGA-19-2629 TCGA-26-5136 TCGA-28-2506 TCGA-32-1986 TCGA-32-2632 TCGA-32-5222 
       16.47         1.22         6.74        12.69         8.84         5.42 
TCGA-41-2573 TCGA-41-3915 
        8.94         6.02 

$`18P GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.70         3.19        15.06        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       28.70        25.05         5.49        10.19        20.84        27.22 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       89.72        22.72         0.23        51.29         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.93         3.48        26.99        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       23.15        92.61        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0269 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       16.90        10.75         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.86         7.69        10.62         0.16        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         2.56        56.84        10.65         5.29        19.04 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.12        13.02         0.23         2.20         2.73        51.32 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        1.97        53.98        19.00         2.53        40.37        37.02 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       26.33        28.47        14.93        10.29        18.28         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        7.04         2.60         0.39         6.44         5.46         3.88 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        4.96        11.84         0.20        12.43        22.49         0.33 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       18.02        10.32        11.80        14.96        10.29         5.52 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
       70.52         4.67         8.05         0.16        35.01        12.33 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        3.22         4.47         9.63         2.04        23.57         9.37 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       22.29        19.53         5.36         2.70         2.14         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        9.17         8.91         6.71         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 
        5.42        20.94         7.43         6.35        26.79         8.65 
TCGA-06-1802 TCGA-06-1804 TCGA-06-2557 TCGA-06-2558 TCGA-06-2561 TCGA-06-2562 
        7.86        13.58         1.08         0.76         9.27         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
        8.52         5.95         6.81         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        9.37        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5859 
        8.98         8.55         6.71         2.73         3.75         4.54 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        3.91         7.76         5.36         1.45         0.49         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 
        8.28        12.85         1.55         4.77         4.96        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       34.75         3.91       108.82         1.74         4.34        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       10.39         7.59         3.39        53.79         1.28         6.41 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        9.17        10.85        15.72         3.19        10.59         0.30 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
        0.56         3.48        11.77         8.52        18.44        58.19 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
        1.28        10.72         4.80         6.51        15.98        17.29 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
        5.52        14.01        14.40         1.61        10.39         5.95 
TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
       10.52         7.17        65.88        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.10         5.49         9.11        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.76        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 TCGA-12-1093 
        8.91        20.58       127.56         5.82        30.54        11.97 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
       11.38        15.85         9.11        14.53         3.98         3.39 
TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       25.28        13.61        59.41        43.20        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5299 TCGA-12-5301 
       10.95        11.77        34.52        11.74         3.22         2.01 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
       15.09        11.97         0.95         6.18        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
       11.24        13.74         3.25         1.35         5.39         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       16.50        26.33         2.04        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 
       12.43         0.99         1.94        17.75         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 
        7.13        17.49         7.96         3.75         3.39         9.86 
TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 
       19.10         5.49         3.91         9.93        26.07        16.31 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.27        29.00         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       18.28        13.97         6.41        11.77        21.86         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 
       12.95         4.64        25.38         3.48         7.13         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
        4.08         7.00         7.04         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.64         4.73         7.96         1.78         6.51         5.39 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
        5.29         5.42        10.03        13.87         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
        7.10         9.37         9.40        14.86         5.49         8.84 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.30         4.80        16.57         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       18.25        33.14        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.72        10.39        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.75         0.20         2.53         9.17         8.32 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.59         8.45         1.18         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.55         2.53        11.77         9.80        14.20         7.79 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         4.21         8.52        10.49         5.42        15.35 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
        4.67        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
       15.95         7.33         8.88         7.36        13.15         3.68 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 TCGA-41-2572 TCGA-41-2575 
       12.59        11.70        10.85         0.85        13.35         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        0.99         4.44         0.20        11.54         7.73         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
       17.52         4.31        14.33         8.22         7.46         4.77 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 
        4.54         3.09         3.65         9.14         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.67         3.29         2.70        11.38        17.06         8.32 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.94         4.83         5.03         0.23         9.24         7.69 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.76         1.61        17.69         0.07 

      18P GAIN CNV 18P GAIN WILD-TYPE 
              0.10               0.07 
      18P GAIN CNV 18P GAIN WILD-TYPE 
             53.19             127.56 
      18P GAIN CNV 18P GAIN WILD-TYPE 
              7.79               9.70 
[1] "0.1 - 53.2 (7.8)"  "0.1 - 127.6 (9.7)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"18P GAIN WILD-TYPE"       "18P GAIN CNV" "18P GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"       "18P GAIN CNV" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
      "18P GAIN CNV" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D31V2, continuous
D31V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN CNV         10   16
  18P GAIN WILD-TYPE  208  318
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  FEMALE           10                208
  MALE             16                318
D31V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  18P GAIN CNV                                   0                   0
  18P GAIN WILD-TYPE                             8                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  18P GAIN CNV                                    26
  18P GAIN WILD-TYPE                             500
D31V5, multiclass
                                 clus
vv                                18P GAIN CNV 18P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0                  8
  TREATED PRIMARY GBM                        0                 18
  UNTREATED PRIMARY (DE NOVO) GBM           26                500
D31V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN CNV         17    9
  18P GAIN WILD-TYPE  364  162
     clus
vv    18P GAIN CNV 18P GAIN WILD-TYPE
  NO            17                364
  YES            9                162

Clustering(32) Variable = 18q gain
D32V1, survival
                    sevent
clus2                  0   1
  18Q GAIN CNV         9  19
  18Q GAIN WILD-TYPE 124 400
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                28                524 
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                19                400 
$`18Q GAIN CNV`
TCGA-02-0266 TCGA-02-0271 TCGA-06-0402 TCGA-06-1087 TCGA-06-1805 TCGA-06-5858 
       17.69        14.47         0.26         3.58         4.18         6.12 
TCGA-06-6698 TCGA-12-0657 TCGA-12-0827 TCGA-12-1092 TCGA-12-1598 TCGA-12-1602 
        4.77         0.10        38.76        21.63         9.44         6.38 
TCGA-12-3651 TCGA-12-5295 TCGA-14-0871 TCGA-14-1823 TCGA-15-1447 TCGA-16-0850 
       11.77        13.08        28.90        17.82        53.19        16.31 
TCGA-19-1787 TCGA-19-2629 TCGA-26-5136 TCGA-28-2506 TCGA-32-1986 TCGA-32-2632 
       12.66        16.47         1.22         6.74        12.69         8.84 
TCGA-32-5222 TCGA-41-2573 TCGA-41-2575 TCGA-41-3915 
        5.42         8.94         9.53         6.02 

$`18Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.70         3.19        15.06        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       28.70        25.05         5.49        10.19        20.84        27.22 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       89.72        22.72         0.23        51.29         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.93         3.48        26.99        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       23.15        92.61        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0269 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       16.90        10.75         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.86         7.69        10.62         0.16        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         2.56        56.84        10.65         5.29        19.04 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.12        13.02         0.23         2.20         2.73        51.32 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        1.97        53.98        19.00         2.53        40.37        37.02 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       26.33        28.47        14.93        10.29        18.28         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        7.04         2.60         0.39         6.44         5.46         3.88 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        4.96        11.84         0.20        12.43        22.49         0.33 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       18.02        10.32        11.80        14.96        10.29         5.52 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
       70.52         4.67         8.05         0.16        35.01        12.33 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        3.22         4.47         9.63         2.04        23.57         9.37 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       22.29        19.53         5.36         2.70         2.14         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        9.17         8.91         6.71         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 
        5.42        20.94         7.43         6.35        26.79         8.65 
TCGA-06-1802 TCGA-06-1804 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
        7.86        13.58         1.08         0.76         4.90         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
        2.83         8.52         5.95         6.81         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        0.43         9.37        11.21         3.52         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         6.71         2.73         3.75 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        7.36         8.28        12.85         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
       22.68        34.75         3.91       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        6.41        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        0.95         9.17        10.85        15.72         3.19        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
        0.30         0.56         3.48        11.77         8.52        18.44 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       58.19         1.28        10.72         4.80         6.51        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       17.29         5.52        14.01        14.40         1.61        10.39 
TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0662 TCGA-12-0670 
        5.95        10.52         7.17        65.88        38.17        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       24.13         6.08         2.63        18.08        28.37        12.43 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       53.10        43.10         5.49         9.11        14.83        14.27 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       91.73        24.76        18.48        10.62        23.51        27.78 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.91        20.58       127.56         5.82         6.21        30.54 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       11.97        11.38        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
        3.39        25.28        13.61        59.41        43.20        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5299 TCGA-12-5301 
       11.54        10.95        34.52        11.74         3.22         2.01 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
       15.09        11.97         0.95         6.18        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
       11.24        13.74         3.25         1.35         5.39         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       16.50        26.33         2.04        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 
       12.43         0.99         1.94        17.75         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 
        7.13        17.49         7.96         3.75         3.39         9.86 
TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 
       19.10         5.49         3.91         9.93        26.07         4.27 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.00         0.82         9.90        13.35         3.65        18.28 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 
       13.97         6.41        11.77        21.86         8.61         0.43 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 
       14.27         3.39        10.75         9.07         5.95        12.95 
TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 
        4.64        25.38         3.48         7.13         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73         7.96         1.78         6.51         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
        5.42        10.03        13.87         9.73        31.33         7.10 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5139 
        9.37         9.40        14.86         5.49         8.84         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       10.39        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.75         0.20         2.53         9.17         8.32         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.45         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77         9.80        14.20         7.79        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        4.21         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.83        16.93        12.23        20.78        14.99        15.95 
TCGA-32-2616 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
        7.33         8.88         7.36        13.15         3.68        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 TCGA-41-2572 TCGA-41-3392 TCGA-41-3393 
       11.70        10.85         0.85        13.35         0.99         4.44 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        11.54         7.73         3.45        17.52         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.46         4.77         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.14         2.53        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.32        20.94         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

      18Q GAIN CNV 18Q GAIN WILD-TYPE 
              0.10               0.07 
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
             53.19             127.56 
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
             9.485              9.600 
[1] "0.1 - 53.2 (9.5)"  "0.1 - 127.6 (9.6)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"18Q GAIN WILD-TYPE"       "18Q GAIN CNV" "18Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"       "18Q GAIN CNV" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
      "18Q GAIN CNV" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN CNV         12   16
  18Q GAIN WILD-TYPE  206  318
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  FEMALE           12                206
  MALE             16                318
D32V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  18Q GAIN CNV                                   0                   0
  18Q GAIN WILD-TYPE                             8                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  18Q GAIN CNV                                    28
  18Q GAIN WILD-TYPE                             498
D32V5, multiclass
                                 clus
vv                                18Q GAIN CNV 18Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0                  8
  TREATED PRIMARY GBM                        0                 18
  UNTREATED PRIMARY (DE NOVO) GBM           28                498
D32V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN CNV         20    8
  18Q GAIN WILD-TYPE  361  163
     clus
vv    18Q GAIN CNV 18Q GAIN WILD-TYPE
  NO            20                361
  YES            8                163

Clustering(33) Variable = 19p gain
D33V1, survival
                    sevent
clus2                  0   1
  19P GAIN CNV        47 125
  19P GAIN WILD-TYPE  86 294
      19P GAIN CNV 19P GAIN WILD-TYPE 
               172                380 
      19P GAIN CNV 19P GAIN WILD-TYPE 
               125                294 
$`19P GAIN CNV`
TCGA-02-0007 TCGA-02-0009 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       23.18        10.59        20.61        55.86        77.62        20.12 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 
        3.58        10.72        18.28        19.73        26.43        25.05 
TCGA-02-0071 TCGA-02-0102 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 
        5.49        26.99        23.15        92.61        99.95        15.65 
TCGA-02-0116 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0285 TCGA-02-0289 
       48.95        16.90        17.69        10.75        13.87        14.20 
TCGA-02-0290 TCGA-02-0333 TCGA-02-0430 TCGA-02-2485 TCGA-06-0122 TCGA-06-0124 
       15.95         4.37        10.55        15.42         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0137 TCGA-06-0145 TCGA-06-0148 
       47.31         0.10         3.55        23.05         2.33         9.80 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0174 TCGA-06-0179 TCGA-06-0185 TCGA-06-0190 TCGA-06-0192 
        5.46         2.20        19.00        37.02        10.29        18.28 
TCGA-06-0201 TCGA-06-0208 TCGA-06-0209 TCGA-06-0211 TCGA-06-0221 TCGA-06-0394 
        0.39         5.46         3.88        11.84        18.02        10.29 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0645 TCGA-06-0743 TCGA-06-0744 TCGA-06-0747 
        0.26        70.52         3.22        22.29        19.53         2.70 
TCGA-06-0877 TCGA-06-0879 TCGA-06-1086 TCGA-06-1802 TCGA-06-2563 TCGA-06-2565 
        6.71        22.98         6.35         7.86         8.52         6.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-6388 TCGA-06-6695 TCGA-06-6699 TCGA-08-0352 
        8.98         8.55         3.91         8.28         1.55         1.28 
TCGA-08-0353 TCGA-08-0355 TCGA-08-0356 TCGA-08-0375 TCGA-08-0509 TCGA-08-0510 
        6.41        22.52        14.70         9.17         0.56         3.48 
TCGA-08-0514 TCGA-08-0518 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
        8.52         1.28         6.51        15.98        17.29         5.52 
TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
        0.10        25.97        24.13        18.08        28.37        12.43 
TCGA-12-0772 TCGA-12-0780 TCGA-12-0819 TCGA-12-0829 TCGA-12-1094 TCGA-12-1099 
       53.10        14.27        24.76        20.58        11.38         3.39 
TCGA-12-1599 TCGA-12-1600 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
       25.28        13.61        25.78        11.54        10.95        34.52 
TCGA-14-0783 TCGA-14-0789 TCGA-14-0790 TCGA-14-0817 TCGA-14-0866 TCGA-14-0867 
        6.18        11.24        13.74         5.39        26.33         2.04 
TCGA-14-1034 TCGA-14-1402 TCGA-14-1450 TCGA-14-1452 TCGA-14-1823 TCGA-14-1829 
       15.95        32.02        58.78         7.10        17.82         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 
       17.49         7.96         3.39        19.10         5.49         3.91 
TCGA-16-0848 TCGA-16-1056 TCGA-16-1062 TCGA-19-0955 TCGA-19-1386 TCGA-19-1388 
        9.93        13.35        18.28        11.77         9.07        12.95 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 TCGA-19-2629 TCGA-19-5950 
       25.38         3.48         7.13         3.25        16.47        11.28 
TCGA-19-5951 TCGA-19-5953 TCGA-19-5958 TCGA-19-5959 TCGA-26-1799 TCGA-26-5139 
        8.02         4.73         5.39         5.29         9.37         1.58 
TCGA-27-1833 TCGA-27-2518 TCGA-27-2524 TCGA-27-2528 TCGA-28-1749 TCGA-28-1751 
       18.25        24.72         7.59        15.75         9.17         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-2502 TCGA-28-2506 TCGA-28-2514 TCGA-28-5208 
        8.45         1.18         0.66         6.74         5.26        15.55 
TCGA-28-5209 TCGA-28-5214 TCGA-28-5218 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
        2.53        14.20         4.21         5.42        15.35         0.10 
TCGA-32-1982 TCGA-32-1987 TCGA-32-2495 TCGA-32-2638 TCGA-32-4211 TCGA-32-5222 
        4.67        14.83        14.99         7.36        12.59         5.42 
TCGA-41-2572 TCGA-41-3393 TCGA-41-5651 TCGA-74-6578 TCGA-76-6280 TCGA-76-6656 
       13.35         4.44        11.54        14.33        11.38         4.83 
TCGA-76-6661 TCGA-76-6663 TCGA-76-6664 TCGA-81-5911 
        0.23         7.69         7.76        17.69 

$`19P GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 
        9.14         4.73        18.35        35.41        20.71        82.55 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0039 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 
       14.14        10.52         6.84        14.70         3.19        15.06 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       12.59         6.54         2.50        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0069 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
        6.02        28.70        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0258 TCGA-02-0271 
        3.48        65.00        11.67        17.65        16.54        14.47 
TCGA-02-0281 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
        3.98        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       15.91        25.71        25.12        10.59        12.39        14.50 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.24        16.18         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2486 TCGA-06-0119 TCGA-06-0128 TCGA-06-0129 
       12.92        15.29        16.18         2.70        22.72        32.48 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       10.52        18.74        14.07        22.16        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0146 TCGA-06-0147 TCGA-06-0149 
        9.21         2.20        11.74        20.09        16.70         7.82 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         2.56        56.84        10.65         5.29 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0175 TCGA-06-0176 
       19.04         3.12        13.02         0.23         2.73        51.32 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0182 TCGA-06-0184 TCGA-06-0187 TCGA-06-0188 
        1.97        53.98         2.53        40.37        26.33        28.47 
TCGA-06-0189 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0206 TCGA-06-0210 
       14.93         4.67         7.04         2.60         6.44         4.96 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        0.20        12.43        22.49         0.33        10.32        11.80 
TCGA-06-0241 TCGA-06-0397 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
       14.96         5.52         4.67         8.05         0.16        35.01 
TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
       12.33         4.47         9.63         2.04        23.57         9.37 
TCGA-06-0745 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 
        5.36         2.14         0.92         9.17         8.91         7.17 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 
        5.85         5.42        20.94         7.43         3.58        26.79 
TCGA-06-1801 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        8.65        13.58         4.18         1.08         0.76         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2564 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
        9.27         2.83         5.95         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        9.37        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6389 
        6.71         2.73         3.75         6.12         4.54         7.76 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6697 TCGA-06-6698 
        5.36         1.45         0.49         7.36        12.85         4.77 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 
        4.77         4.96        22.68        34.75         3.91       108.82 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         4.34        13.78        10.39         7.59         3.39 
TCGA-08-0351 TCGA-08-0354 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0380 
       53.79        15.06        35.64        19.50         0.95        10.85 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0512 TCGA-08-0516 
       15.72         3.19        10.59         0.30        11.77        18.44 
TCGA-08-0517 TCGA-08-0520 TCGA-08-0521 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
       58.19        10.72         4.80        14.01        14.40         1.61 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0662 
       10.39         5.95        10.52         7.17        65.88        38.17 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
        6.08         2.63        43.10         5.49         9.11        14.83 
TCGA-12-0818 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       91.73        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
        8.91       127.56         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 
       11.97        15.85         9.11        14.53         3.98         9.44 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3651 TCGA-12-3653 TCGA-12-5295 
        6.38        59.41        43.20        11.77        11.74        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 
        3.22         2.01        15.09        11.97         0.95        23.05 
TCGA-14-0787 TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 TCGA-14-0865 TCGA-14-0871 
        2.24         3.25         1.35         2.89        16.50        28.90 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1451 
       19.30         0.79         1.38         1.12         3.75        23.11 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        1.15        30.15         0.92        40.93         6.12        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-3477 
        0.99         1.94        17.75         7.63         5.88         3.75 
TCGA-15-0742 TCGA-15-1447 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 
        9.86        53.19        26.07        16.31         4.27        29.00 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1060 TCGA-16-1063 TCGA-16-1460 TCGA-19-0957 
        0.82         9.90         3.65        13.97         6.41        21.86 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1387 
        8.61         0.43        14.27         3.39        10.75         5.95 
TCGA-19-1389 TCGA-19-1787 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
        4.64        12.66         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        7.53         0.16         4.08         7.00         7.04         6.64 
TCGA-19-5952 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5960 TCGA-26-1438 
       18.64         7.96         1.78         6.51         5.42        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-5132 TCGA-26-5133 
       13.87         9.73        31.33         7.10         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        5.49         8.84         1.22         7.92         2.30         4.80 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
       16.57         9.86        33.14        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 
       11.51        10.39        10.39        16.08         2.86        14.40 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1750 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        0.20         2.53         8.32         1.51         2.83         0.13 
TCGA-28-2509 TCGA-28-2513 TCGA-28-5204 TCGA-28-5207 TCGA-28-5211 TCGA-28-5213 
        4.77         7.30         3.91         9.04        11.77         9.80 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 TCGA-32-1973 TCGA-32-1976 
        7.79        13.64         8.52        10.49        21.07         0.49 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 
       15.85        19.50         1.18        12.69        16.93        12.23 
TCGA-32-2494 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-4208 
       20.78        15.95         7.33         8.84         8.88        13.15 
TCGA-32-4210 TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 TCGA-41-2573 TCGA-41-2575 
        3.68        11.70        10.85         0.85         8.94         9.53 
TCGA-41-3392 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
        0.99         6.02         0.20         7.73         3.45        17.52 
TCGA-74-6577 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
        4.31         8.22         7.46         4.77         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.14         2.53        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6657 TCGA-76-6662 
        2.70        17.06         8.32        20.94         5.03         9.24 
TCGA-81-5910 TCGA-87-5896 
        1.61         0.07 

      19P GAIN CNV 19P GAIN WILD-TYPE 
              0.10               0.07 
      19P GAIN CNV 19P GAIN WILD-TYPE 
             99.95             127.56 
      19P GAIN CNV 19P GAIN WILD-TYPE 
             10.85               9.24 
[1] "0.1 - 100.0 (10.8)" "0.1 - 127.6 (9.2)" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
      "19P GAIN CNV"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
      "19P GAIN CNV"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
      "19P GAIN CNV" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
      "19P GAIN CNV" "19P GAIN WILD-TYPE"       "19P GAIN CNV" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"19P GAIN WILD-TYPE"       "19P GAIN CNV"       "19P GAIN CNV" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"19P GAIN WILD-TYPE"       "19P GAIN CNV" "19P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN CNV         67  105
  19P GAIN WILD-TYPE  151  229
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  FEMALE           67                151
  MALE            105                229
D33V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  19P GAIN CNV                                   2                   8
  19P GAIN WILD-TYPE                             6                  10
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  19P GAIN CNV                                   162
  19P GAIN WILD-TYPE                             364
D33V5, multiclass
                                 clus
vv                                19P GAIN CNV 19P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              2                  6
  TREATED PRIMARY GBM                        8                 10
  UNTREATED PRIMARY (DE NOVO) GBM          162                364
D33V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN CNV        123   49
  19P GAIN WILD-TYPE  258  122
     clus
vv    19P GAIN CNV 19P GAIN WILD-TYPE
  NO           123                258
  YES           49                122

Clustering(34) Variable = 19q gain
D34V1, survival
                    sevent
clus2                  0   1
  19Q GAIN CNV        42 107
  19Q GAIN WILD-TYPE  91 312
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
               149                403 
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
               107                312 
$`19Q GAIN CNV`
TCGA-02-0009 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0037 
       10.59        20.61        55.86        77.62        20.12         3.58 
TCGA-02-0038 TCGA-02-0043 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 
       10.72        18.28        19.73        26.43        25.05         5.49 
TCGA-02-0102 TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 
       26.99        23.15        92.61        15.65        48.95        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0333 
       17.69        10.75        13.87        14.20        15.95         4.37 
TCGA-02-0430 TCGA-02-2485 TCGA-06-0122 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
       10.55        15.42         0.26        47.31         0.10         3.55 
TCGA-06-0137 TCGA-06-0145 TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 TCGA-06-0155 
       23.05         2.33         9.80        19.46        46.59         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0174 TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 
        3.19         5.46         2.20        19.00         2.53        37.02 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0201 TCGA-06-0208 TCGA-06-0209 TCGA-06-0211 
       10.29        18.28         0.39         5.46         3.88        11.84 
TCGA-06-0394 TCGA-06-0402 TCGA-06-0409 TCGA-06-0645 TCGA-06-0743 TCGA-06-0744 
       10.29         0.26        70.52         3.22        22.29        19.53 
TCGA-06-0877 TCGA-06-0879 TCGA-06-1086 TCGA-06-1802 TCGA-06-2563 TCGA-06-2565 
        6.71        22.98         6.35         7.86         8.52         6.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-6388 TCGA-06-6695 TCGA-08-0352 TCGA-08-0355 
        8.98         8.55         3.91         8.28         1.28        22.52 
TCGA-08-0356 TCGA-08-0375 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 TCGA-08-0518 
       14.70         9.17         0.56         3.48         8.52         1.28 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0657 TCGA-12-0670 
        6.51        15.98        17.29         5.52         0.10        25.97 
TCGA-12-0688 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0778 
       24.13        18.08        28.37        12.43        53.10        14.83 
TCGA-12-0780 TCGA-12-0819 TCGA-12-0829 TCGA-12-1094 TCGA-12-1599 TCGA-12-1600 
       14.27        24.76        20.58        11.38        25.28        13.61 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-14-0789 TCGA-14-0790 
       25.78        11.54        10.95        34.52        11.24        13.74 
TCGA-14-0817 TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 TCGA-14-1402 TCGA-14-1450 
        5.39        26.33         2.04        15.95        32.02        58.78 
TCGA-14-1823 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-15-1446 TCGA-16-0846 
       17.82         7.13        17.49         7.96        19.10         3.91 
TCGA-16-0848 TCGA-16-1062 TCGA-19-0955 TCGA-19-1386 TCGA-19-1786 TCGA-19-1789 
        9.93        18.28        11.77         9.07         7.13         3.25 
TCGA-19-2620 TCGA-19-5950 TCGA-19-5953 TCGA-26-1799 TCGA-26-5139 TCGA-27-1833 
        4.87        11.28         4.73         9.37         1.58        18.25 
TCGA-27-2518 TCGA-27-2524 TCGA-27-2528 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 
       24.72         7.59        15.75         9.17         7.59         8.45 
TCGA-28-1753 TCGA-28-2506 TCGA-28-2514 TCGA-28-5208 TCGA-28-5209 TCGA-28-5214 
        1.18         6.74         5.26        15.55         2.53        14.20 
TCGA-28-5218 TCGA-28-6450 TCGA-32-1977 TCGA-32-1982 TCGA-32-2495 TCGA-32-2638 
        4.21         5.42         0.10         4.67        14.99         7.36 
TCGA-32-5222 TCGA-41-2572 TCGA-41-3393 TCGA-41-5651 TCGA-74-6578 TCGA-76-6280 
        5.42        13.35         4.44        11.54        14.33        11.38 
TCGA-76-6656 TCGA-76-6661 TCGA-76-6663 TCGA-76-6664 TCGA-81-5911 
        4.83         0.23         7.69         7.76        17.69 

$`19Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 
        9.14         4.73        18.35        23.18        35.41        20.71 
TCGA-02-0014 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 
       82.55        53.06        42.74        24.59        10.36        90.58 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0039 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
        2.83        14.14        10.52         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
       15.06        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0069 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
        9.57         6.02        28.70        10.19        20.84        27.22 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       89.72        22.72         0.23        51.29         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0114 
       16.93         3.48        65.00        11.67        17.65        99.95 
TCGA-02-0258 TCGA-02-0271 TCGA-02-0281 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       16.54        14.47         3.98        12.23         9.86         7.69 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0337 TCGA-02-0338 
       10.62         0.16        15.91        25.71        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       12.39        14.50        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2486 TCGA-06-0119 
        3.35        16.80        12.92        15.29        16.18         2.70 
TCGA-06-0124 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        4.04        22.72        32.48        10.52        18.74        14.07 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       22.16        10.75         0.20         9.21         2.20        11.74 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0149 TCGA-06-0152 TCGA-06-0154 TCGA-06-0159 
       20.09        16.70         7.82        11.80        12.79         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         2.56        56.84        10.65         5.29        19.04 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
        3.12        13.02         0.23         2.73        51.32         1.97 
TCGA-06-0178 TCGA-06-0184 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0194 
       53.98        40.37        26.33        28.47        14.93         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0206 TCGA-06-0210 TCGA-06-0213 TCGA-06-0214 
        7.04         2.60         6.44         4.96         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 
       22.49         0.33        18.02        10.32        11.80        14.96 
TCGA-06-0397 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
        5.52         4.67         8.05         0.16        35.01        12.33 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0745 
        4.47         9.63         2.04        23.57         9.37         5.36 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 
        2.70         2.14         0.92         9.17         8.91         7.17 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 
        5.85         5.42        20.94         7.43         3.58        26.79 
TCGA-06-1801 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        8.65        13.58         4.18         1.08         0.76         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2564 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
        9.27         2.83         5.95         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        9.37        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6389 
        6.71         2.73         3.75         6.12         4.54         7.76 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6697 TCGA-06-6698 
        5.36         1.45         0.49         7.36        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 
        1.55         4.77         4.96        22.68        34.75         3.91 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      108.82         1.74         4.34        13.78        10.39         7.59 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0353 TCGA-08-0354 TCGA-08-0357 TCGA-08-0358 
        3.39        53.79         6.41        15.06        35.64        19.50 
TCGA-08-0359 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        0.95        10.85        15.72         3.19        10.59         0.30 
TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 TCGA-08-0520 TCGA-08-0521 TCGA-12-0615 
       11.77        18.44        58.19        10.72         4.80        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 
       14.40         1.61        10.39         5.95        10.52         7.17 
TCGA-12-0656 TCGA-12-0662 TCGA-12-0691 TCGA-12-0692 TCGA-12-0773 TCGA-12-0775 
       65.88        38.17         6.08         2.63        43.10         5.49 
TCGA-12-0776 TCGA-12-0818 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
        9.11        91.73        18.48        10.62        23.51        27.78 
TCGA-12-0827 TCGA-12-0828 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
       38.76         8.91       127.56         5.82         6.21        30.54 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       21.63        11.97        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3651 
        3.39         9.44         6.38        59.41        43.20        11.77 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       11.74        13.08         3.22         2.01        15.09        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0812 TCGA-14-0813 
        0.95         6.18        23.05         2.24         3.25         1.35 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
        2.89        16.50        28.90        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
        1.12         3.75        23.11         7.10         1.15        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.93         6.12        12.43         0.99         1.94 
TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 
       17.75         7.63         5.88         3.75         3.39         9.86 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 
       53.19         5.49        26.07        16.31         4.27        29.00 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1063 TCGA-16-1460 
        0.82         9.90        13.35         3.65        13.97         6.41 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       21.86         8.61         0.43        14.27         3.39        10.75 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1787 
        5.95        12.95         4.64        25.38         3.48        12.66 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        0.13         9.67         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5951 TCGA-19-5952 
       16.47         7.00         7.04         6.64         8.02        18.64 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        7.96         1.78         6.51         5.39         5.29         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-5132 
       10.03        13.87         9.73        31.33         7.10         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-6173 TCGA-26-6174 
       14.86         5.49         8.84         1.22         7.92         2.30 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
        4.80        16.57         9.86        33.14        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2526 
       14.04        11.51        10.39        10.39        16.08         2.86 
TCGA-27-2527 TCGA-28-1746 TCGA-28-1747 TCGA-28-1750 TCGA-28-1755 TCGA-28-1756 
       14.40         0.20         2.53         8.32         1.51         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-5204 TCGA-28-5207 
        0.13         0.66         4.77         7.30         3.91         9.04 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 
       11.77         9.80         7.79        13.64         8.52        10.49 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       15.35        21.07         0.49        15.85        19.50         1.18 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2615 
       12.69        14.83        16.93        12.23        20.78        15.95 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
        7.33         8.84         8.88        13.15         3.68        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-41-2571 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       11.70        10.85         0.85         8.94         9.53         0.99 
TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        6.02         0.20         7.73         3.45        17.52         4.31 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.46         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6657 TCGA-76-6662 TCGA-81-5910 
       17.06         8.32        20.94         5.03         9.24         1.61 
TCGA-87-5896 
        0.07 

      19Q GAIN CNV 19Q GAIN WILD-TYPE 
              0.10               0.07 
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
             92.61             127.56 
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
             10.95               9.24 
[1] "0.1 - 92.6 (10.9)" "0.1 - 127.6 (9.2)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
      "19Q GAIN CNV"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
      "19Q GAIN CNV"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
      "19Q GAIN CNV"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
      "19Q GAIN CNV"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
      "19Q GAIN CNV"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
      "19Q GAIN CNV"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
      "19Q GAIN CNV"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
      "19Q GAIN CNV"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
      "19Q GAIN CNV"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
      "19Q GAIN CNV"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
      "19Q GAIN CNV"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
      "19Q GAIN CNV"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
      "19Q GAIN CNV"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
      "19Q GAIN CNV" "19Q GAIN WILD-TYPE"       "19Q GAIN CNV" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV"       "19Q GAIN CNV" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"19Q GAIN WILD-TYPE"       "19Q GAIN CNV" "19Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN CNV         57   92
  19Q GAIN WILD-TYPE  161  242
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  FEMALE           57                161
  MALE             92                242
D34V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  19Q GAIN CNV                                   2                   6
  19Q GAIN WILD-TYPE                             6                  12
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  19Q GAIN CNV                                   141
  19Q GAIN WILD-TYPE                             385
D34V5, multiclass
                                 clus
vv                                19Q GAIN CNV 19Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              2                  6
  TREATED PRIMARY GBM                        6                 12
  UNTREATED PRIMARY (DE NOVO) GBM          141                385
D34V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN CNV        104   45
  19Q GAIN WILD-TYPE  277  126
     clus
vv    19Q GAIN CNV 19Q GAIN WILD-TYPE
  NO           104                277
  YES           45                126

Clustering(35) Variable = 20p gain
D35V1, survival
                    sevent
clus2                  0   1
  20P GAIN CNV        44 132
  20P GAIN WILD-TYPE  89 287
      20P GAIN CNV 20P GAIN WILD-TYPE 
               176                376 
      20P GAIN CNV 20P GAIN WILD-TYPE 
               132                287 
$`20P GAIN CNV`
TCGA-02-0006 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0025 TCGA-02-0037 
       18.35        20.61        55.86        77.62        42.74         3.58 
TCGA-02-0043 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0068 TCGA-02-0083 
       18.28         6.54         2.50        19.86        26.43        22.72 
TCGA-02-0084 TCGA-02-0086 TCGA-02-0089 TCGA-02-0106 TCGA-02-0111 TCGA-02-0113 
        0.23         8.81        16.93        11.67        23.15        92.61 
TCGA-02-0116 TCGA-02-0266 TCGA-02-0269 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       48.95        17.69        10.75        13.87        14.20        15.95 
TCGA-02-0333 TCGA-02-2483 TCGA-06-0122 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        4.37        15.29         0.26        47.31         0.10         3.55 
TCGA-06-0137 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       23.05         9.80         7.82        19.46        46.59        11.80 
TCGA-06-0154 TCGA-06-0157 TCGA-06-0158 TCGA-06-0164 TCGA-06-0169 TCGA-06-0171 
       12.79         3.19         5.46        56.84         3.12        13.02 
TCGA-06-0173 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0179 TCGA-06-0182 
        0.23         2.73        51.32         1.97        19.00         2.53 
TCGA-06-0185 TCGA-06-0192 TCGA-06-0195 TCGA-06-0206 TCGA-06-0209 TCGA-06-0211 
       37.02        18.28         7.04         6.44         3.88        11.84 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0645 TCGA-06-0743 
        5.52         0.26        70.52         4.67         3.22        22.29 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0877 TCGA-06-0882 TCGA-06-1087 TCGA-06-2557 
        5.36         2.70         6.71         5.42         3.58         1.08 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2565 TCGA-06-2569 TCGA-06-5414 TCGA-06-5415 
        2.83         8.52         6.81         0.43         8.98         8.55 
TCGA-06-6388 TCGA-06-6390 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-08-0246 
        3.91         5.36         8.28        12.85         4.77         3.91 
TCGA-08-0352 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0375 TCGA-08-0510 
        1.28        22.52        14.70        35.64         9.17         3.48 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 TCGA-08-0529 TCGA-08-0531 TCGA-12-0656 
        8.52        18.44         1.28        17.29         5.52        65.88 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0778 
       25.97        24.13         2.63        18.08        28.37        14.83 
TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0829 TCGA-12-1094 TCGA-12-1095 
       14.27        24.76        18.48        20.58        11.38        15.85 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3648 TCGA-12-3649 TCGA-12-3652 TCGA-14-0740 
       13.61         6.38        25.78        11.54        34.52        11.97 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0866 TCGA-14-0871 TCGA-14-1043 
        6.18        23.05         2.24        26.33        28.90         0.79 
TCGA-14-1395 TCGA-14-1402 TCGA-14-1452 TCGA-14-1453 TCGA-14-1823 TCGA-14-2554 
        1.38        32.02         7.10         1.15        17.82        17.49 
TCGA-14-2555 TCGA-15-0742 TCGA-15-1447 TCGA-15-1449 TCGA-16-0861 TCGA-16-1060 
        7.96         9.86        53.19         5.49         4.27         3.65 
TCGA-16-1062 TCGA-19-0955 TCGA-19-1386 TCGA-19-1786 TCGA-19-1789 TCGA-19-2631 
       18.28        11.77         9.07         7.13         3.25         7.00 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5954 TCGA-19-5958 TCGA-19-5959 TCGA-26-1440 
       11.28         8.02         7.96         5.39         5.29         9.73 
TCGA-26-1799 TCGA-26-6173 TCGA-27-1833 TCGA-27-1835 TCGA-27-2519 TCGA-27-2523 
        9.37         7.92        18.25        21.30        10.39        16.08 
TCGA-27-2526 TCGA-27-2528 TCGA-28-1749 TCGA-28-1751 TCGA-28-2506 TCGA-28-2509 
        2.86        15.75         9.17         7.59         6.74         4.77 
TCGA-28-5218 TCGA-28-6450 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-2491 
        4.21         5.42         0.10        15.85        19.50        12.23 
TCGA-32-2495 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4210 TCGA-32-5222 
       14.99         8.84         8.88         7.36         3.68         5.42 
TCGA-41-2571 TCGA-41-2572 TCGA-41-3393 TCGA-41-5651 TCGA-41-6646 TCGA-74-6575 
        0.85        13.35         4.44        11.54         7.73        17.52 
TCGA-74-6581 TCGA-76-4925 TCGA-76-4929 TCGA-76-6280 TCGA-76-6656 TCGA-76-6657 
        8.22         4.77         3.65        11.38         4.83         5.03 
TCGA-76-6661 TCGA-76-6664 
        0.23         7.76 

$`20P GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        9.14         4.73        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0023 TCGA-02-0024 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 
       82.55        20.12        53.06        24.59        10.36        90.58 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0038 TCGA-02-0039 TCGA-02-0046 TCGA-02-0047 
        2.83        14.14        10.72        10.52         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
        3.19        15.06        12.59         8.35         9.57         6.02 
TCGA-02-0064 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
       19.73        28.70        25.05         5.49        10.19        20.84 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0085 TCGA-02-0087 TCGA-02-0099 TCGA-02-0102 
       27.22        89.72        51.29        57.76         3.48        26.99 
TCGA-02-0104 TCGA-02-0107 TCGA-02-0114 TCGA-02-0115 TCGA-02-0258 TCGA-02-0260 
       65.00        17.65        99.95        15.65        16.54        16.90 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.47         3.98        12.23         9.86         7.69        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
        0.16        15.91        25.71        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
        3.35        16.80        12.92        15.42        16.18         2.70 
TCGA-06-0124 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        4.04        22.72        32.48        10.52        18.74        14.07 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       22.16        10.75         0.20         9.21         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0155 TCGA-06-0159 TCGA-06-0160 
        2.33        20.09        16.70         8.65         9.44        11.80 
TCGA-06-0162 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0174 TCGA-06-0178 
        2.56        10.65         5.29        19.04         2.20        53.98 
TCGA-06-0184 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 
       40.37        26.33        28.47        14.93        10.29         4.67 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0208 TCGA-06-0210 TCGA-06-0213 TCGA-06-0214 
        2.60         0.39         5.46         4.96         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 
       22.49         0.33        18.02        10.32        11.80        14.96 
TCGA-06-0394 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0646 
       10.29         8.05         0.16        35.01        12.33         4.47 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0744 TCGA-06-0749 
        9.63         2.04        23.57         9.37        19.53         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        0.92         9.17         8.91         7.17        22.98         5.85 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
       20.94         7.43         6.35        26.79         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2564 
       13.58         4.18         0.76         4.90         9.27         5.95 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        5.98         4.37         9.37        11.21         3.52         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        4.54         8.81         6.71         2.73         3.75         6.12 
TCGA-06-5859 TCGA-06-6389 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6699 
        4.54         7.76         1.45         0.49         7.36         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 
        4.77         4.96        22.68        34.75       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        4.34        13.78        10.39         7.59         3.39        53.79 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0358 TCGA-08-0359 TCGA-08-0380 TCGA-08-0386 
        6.41        15.06        19.50         0.95        10.85        15.72 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0517 
        3.19        10.59         0.30         0.56        11.77        58.19 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-12-0615 TCGA-12-0616 
       10.72         4.80         6.51        15.98        14.01        14.40 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0657 
        1.61        10.39         5.95        10.52         7.17         0.10 
TCGA-12-0662 TCGA-12-0691 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       38.17         6.08        12.43        53.10        43.10         5.49 
TCGA-12-0776 TCGA-12-0818 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
        9.11        91.73        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
        8.91       127.56         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       11.97         9.11        14.53         3.98         3.39         9.44 
TCGA-12-1599 TCGA-12-3644 TCGA-12-3646 TCGA-12-3650 TCGA-12-3651 TCGA-12-3653 
       25.28        59.41        43.20        10.95        11.77        11.74 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0789 
       13.08         3.22         2.01        15.09         0.95        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 
       13.74         3.25         1.35         5.39         2.89        16.50 
TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 TCGA-14-1396 TCGA-14-1401 TCGA-14-1450 
        2.04        15.95        19.30         1.12         3.75        58.78 
TCGA-14-1451 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
       23.11        30.15         0.92        40.93         6.12        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        0.99         1.94        17.75         7.63         5.88         7.13 
TCGA-14-3477 TCGA-14-4157 TCGA-15-1446 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
        3.75         3.39        19.10         3.91         9.93        26.07 
TCGA-16-0850 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1063 
       16.31        29.00         0.82         9.90        13.35        13.97 
TCGA-16-1460 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
        6.41        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 
       10.75         5.95        12.95         4.64        25.38         3.48 
TCGA-19-1787 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
       12.66         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-4065 TCGA-19-5947 TCGA-19-5952 
        0.16         4.08        16.47         7.04         6.64        18.64 
TCGA-19-5953 TCGA-19-5955 TCGA-19-5956 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        4.73         1.78         6.51         5.42        10.03        13.87 
TCGA-26-1442 TCGA-26-1443 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       31.33         7.10         9.40        14.86         5.49         8.84 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.22         1.58         2.30         4.80        16.57         9.86 
TCGA-27-1834 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2521 
       33.14        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2524 TCGA-27-2527 TCGA-28-1746 TCGA-28-1747 TCGA-28-1750 TCGA-28-1752 
        7.59        14.40         0.20         2.53         8.32         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2513 
        1.18         1.51         2.83         0.13         0.66         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26         3.91         9.04        15.55         2.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 
        9.80        14.20         7.79        13.64         8.52        10.49 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.35        21.07         0.49         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2494 TCGA-32-2615 TCGA-32-2616 TCGA-32-4208 
       14.83        16.93        20.78        15.95         7.33        13.15 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       12.59        11.70        10.85         8.94         9.53         0.99 
TCGA-41-3915 TCGA-41-4097 TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
        6.02         0.20         3.45         4.31        14.33         7.46 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        4.54         3.09         9.14         2.53        10.78        16.67 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6662 
        3.29         2.70        17.06         8.32        20.94         9.24 
TCGA-76-6663 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         1.61        17.69         0.07 

      20P GAIN CNV 20P GAIN WILD-TYPE 
              0.10               0.07 
      20P GAIN CNV 20P GAIN WILD-TYPE 
             92.61             127.56 
      20P GAIN CNV 20P GAIN WILD-TYPE 
             9.025              9.830 
[1] "0.1 - 92.6 (9.0)"  "0.1 - 127.6 (9.8)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"20P GAIN WILD-TYPE"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
      "20P GAIN CNV" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
      "20P GAIN CNV"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
      "20P GAIN CNV" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"20P GAIN WILD-TYPE"       "20P GAIN CNV" "20P GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
      "20P GAIN CNV"       "20P GAIN CNV"       "20P GAIN CNV" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"       "20P GAIN CNV" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D35V2, continuous
D35V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN CNV         72  104
  20P GAIN WILD-TYPE  146  230
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  FEMALE           72                146
  MALE            104                230
D35V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  20P GAIN CNV                                   2                   7
  20P GAIN WILD-TYPE                             6                  11
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  20P GAIN CNV                                   167
  20P GAIN WILD-TYPE                             359
D35V5, multiclass
                                 clus
vv                                20P GAIN CNV 20P GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              2                  6
  TREATED PRIMARY GBM                        7                 11
  UNTREATED PRIMARY (DE NOVO) GBM          167                359
D35V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN CNV        127   49
  20P GAIN WILD-TYPE  254  122
     clus
vv    20P GAIN CNV 20P GAIN WILD-TYPE
  NO           127                254
  YES           49                122

Clustering(36) Variable = 20q gain
D36V1, survival
                    sevent
clus2                  0   1
  20Q GAIN CNV        45 129
  20Q GAIN WILD-TYPE  88 290
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
               174                378 
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
               129                290 
$`20Q GAIN CNV`
TCGA-02-0006 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0025 TCGA-02-0037 
       18.35        20.61        55.86        77.62        42.74         3.58 
TCGA-02-0038 TCGA-02-0043 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0068 
       10.72        18.28         6.54         2.50        19.86        26.43 
TCGA-02-0069 TCGA-02-0079 TCGA-02-0083 TCGA-02-0084 TCGA-02-0086 TCGA-02-0089 
       28.70        27.22        22.72         0.23         8.81        16.93 
TCGA-02-0106 TCGA-02-0111 TCGA-02-0113 TCGA-02-0116 TCGA-02-0266 TCGA-02-0269 
       11.67        23.15        92.61        48.95        17.69        10.75 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0333 TCGA-02-2466 TCGA-06-0122 TCGA-06-0125 
       13.87        14.20         4.37        16.80         0.26        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0137 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        0.10         3.55        23.05         9.80         7.82        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0157 TCGA-06-0158 TCGA-06-0164 
       46.59        11.80        12.79         3.19         5.46        56.84 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
        3.12        13.02         0.23         2.73        51.32         1.97 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 TCGA-06-0192 TCGA-06-0195 TCGA-06-0206 
       19.00         2.53        37.02        18.28         7.04         6.44 
TCGA-06-0209 TCGA-06-0211 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
        3.88        11.84        10.29         5.52         0.26        70.52 
TCGA-06-0410 TCGA-06-0645 TCGA-06-0743 TCGA-06-0745 TCGA-06-0747 TCGA-06-0877 
        4.67         3.22        22.29         5.36         2.70         6.71 
TCGA-06-0879 TCGA-06-0882 TCGA-06-1087 TCGA-06-2557 TCGA-06-2562 TCGA-06-2563 
       22.98         5.42         3.58         1.08         2.83         8.52 
TCGA-06-2565 TCGA-06-2569 TCGA-06-5414 TCGA-06-5415 TCGA-06-6388 TCGA-06-6390 
        6.81         0.43         8.98         8.55         3.91         5.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-08-0246 TCGA-08-0352 TCGA-08-0355 
        8.28        12.85         4.77         3.91         1.28        22.52 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0375 TCGA-08-0510 TCGA-08-0514 TCGA-08-0516 
       14.70        35.64         9.17         3.48         8.52        18.44 
TCGA-08-0518 TCGA-08-0529 TCGA-08-0531 TCGA-12-0656 TCGA-12-0670 TCGA-12-0688 
        1.28        17.29         5.52        65.88        25.97        24.13 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 
        2.63        18.08        28.37        14.27        24.76        18.48 
TCGA-12-0829 TCGA-12-1094 TCGA-12-1600 TCGA-12-1602 TCGA-12-3648 TCGA-12-3649 
       20.58        11.38        13.61         6.38        25.78        11.54 
TCGA-12-3652 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0866 TCGA-14-0871 
       34.52         6.18        23.05         2.24        26.33        28.90 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1402 TCGA-14-1452 TCGA-14-1823 TCGA-14-2554 
        0.79         1.38        32.02         7.10        17.82        17.49 
TCGA-14-2555 TCGA-15-0742 TCGA-15-1449 TCGA-16-1060 TCGA-19-0955 TCGA-19-0960 
        7.96         9.86         5.49         3.65        11.77         8.61 
TCGA-19-1386 TCGA-19-1786 TCGA-19-1789 TCGA-19-2631 TCGA-19-5950 TCGA-19-5951 
        9.07         7.13         3.25         7.00        11.28         8.02 
TCGA-19-5954 TCGA-19-5958 TCGA-19-5959 TCGA-26-1440 TCGA-26-1799 TCGA-26-6173 
        7.96         5.39         5.29         9.73         9.37         7.92 
TCGA-27-1833 TCGA-27-1835 TCGA-27-2519 TCGA-27-2523 TCGA-27-2526 TCGA-27-2528 
       18.25        21.30        10.39        16.08         2.86        15.75 
TCGA-28-1749 TCGA-28-1751 TCGA-28-2506 TCGA-28-2509 TCGA-28-5214 TCGA-28-5218 
        9.17         7.59         6.74         4.77        14.20         4.21 
TCGA-28-6450 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-2491 TCGA-32-2495 
        5.42         0.10        15.85        19.50        12.23        14.99 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
        8.84         8.88         7.36         5.42         0.85        13.35 
TCGA-41-3393 TCGA-41-5651 TCGA-41-6646 TCGA-74-6575 TCGA-74-6581 TCGA-76-4925 
        4.44        11.54         7.73        17.52         8.22         4.77 
TCGA-76-4929 TCGA-76-6280 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6664 
        3.65        11.38         4.83         5.03         0.23         7.76 

$`20Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        9.14         4.73        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0023 TCGA-02-0024 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 
       82.55        20.12        53.06        24.59        10.36        90.58 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0039 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
        2.83        14.14        10.52         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 
       15.06        12.59         8.35         9.57         6.02        19.73 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0080 TCGA-02-0085 
       25.05         5.49        10.19        20.84        89.72        51.29 
TCGA-02-0087 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0114 
       57.76         3.48        26.99        65.00        17.65        99.95 
TCGA-02-0115 TCGA-02-0258 TCGA-02-0260 TCGA-02-0271 TCGA-02-0281 TCGA-02-0290 
       15.65        16.54        16.90        14.47         3.98        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.86         7.69        10.62         0.16        15.91 
TCGA-02-0332 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
       25.71        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 
       47.11        11.34         9.24        16.18         3.35        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0124 TCGA-06-0128 
       15.29        15.42        16.18         2.70         4.04        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0138 TCGA-06-0139 
       32.48        10.52        18.74        14.07        22.16        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20         9.21         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0155 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0165 
       16.70         8.65         9.44        11.80         2.56        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 TCGA-06-0187 
        5.29        19.04         2.20        53.98        40.37        26.33 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 
       28.47        14.93        10.29         4.67         2.60         0.39 
TCGA-06-0208 TCGA-06-0210 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        5.46         4.96         0.20        12.43        22.49         0.33 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0412 TCGA-06-0413 
       18.02        10.32        11.80        14.96         8.05         0.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       35.01        12.33         4.47         9.63         2.04        23.57 
TCGA-06-0686 TCGA-06-0744 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        9.37        19.53         2.14         0.92         9.17         8.91 
TCGA-06-0878 TCGA-06-0881 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 
        7.17         5.85        20.94         7.43         6.35        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 
        8.65         7.86        13.58         4.18         0.76         4.90 
TCGA-06-2561 TCGA-06-2564 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 
        9.27         5.95         5.98         4.37         9.37        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5416 TCGA-06-5418 
        3.52         8.35         4.54         8.81         6.71         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6389 TCGA-06-6391 TCGA-06-6693 
        3.75         6.12         4.54         7.76         1.45         0.49 
TCGA-06-6694 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 
        7.36         1.55         4.77         4.96        22.68        34.75 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      108.82         1.74         4.34        13.78        10.39         7.59 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0353 TCGA-08-0354 TCGA-08-0358 TCGA-08-0359 
        3.39        53.79         6.41        15.06        19.50         0.95 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       10.85        15.72         3.19        10.59         0.30         0.56 
TCGA-08-0512 TCGA-08-0517 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       11.77        58.19        10.72         4.80         6.51        15.98 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 
       14.01        14.40         1.61        10.39         5.95        10.52 
TCGA-12-0654 TCGA-12-0657 TCGA-12-0662 TCGA-12-0691 TCGA-12-0769 TCGA-12-0772 
        7.17         0.10        38.17         6.08        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0818 TCGA-12-0821 
       43.10         5.49         9.11        14.83        91.73        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-1088 TCGA-12-1089 
       23.51        27.78        38.76         8.91       127.56         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1095 TCGA-12-1096 
        6.21        30.54        21.63        11.97        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-3644 
       14.53         3.98         3.39         9.44        25.28        59.41 
TCGA-12-3646 TCGA-12-3650 TCGA-12-3651 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       43.20        10.95        11.77        11.74        13.08         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0789 TCGA-14-0790 
        2.01        15.09        11.97         0.95        11.24        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0867 
        3.25         1.35         5.39         2.89        16.50         2.04 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1396 TCGA-14-1401 TCGA-14-1450 TCGA-14-1451 
       15.95        19.30         1.12         3.75        58.78        23.11 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        1.15        30.15         0.92        40.93         6.12        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        0.99         1.94        17.75         7.63         5.88         7.13 
TCGA-14-3477 TCGA-14-4157 TCGA-15-1446 TCGA-15-1447 TCGA-16-0846 TCGA-16-0848 
        3.75         3.39        19.10        53.19         3.91         9.93 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
       26.07        16.31         4.27        29.00         0.82         9.90 
TCGA-16-1056 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0957 TCGA-19-0962 
       13.35        18.28        13.97         6.41        21.86         0.43 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 
       14.27         3.39        10.75         5.95        12.95         4.64 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1787 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
       25.38         3.48        12.66         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-4065 
        1.08         7.53         0.16         4.08        16.47         7.04 
TCGA-19-5947 TCGA-19-5952 TCGA-19-5953 TCGA-19-5955 TCGA-19-5956 TCGA-19-5960 
        6.64        18.64         4.73         1.78         6.51         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1442 TCGA-26-1443 TCGA-26-5132 TCGA-26-5133 
       10.03        13.87        31.33         7.10         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6174 TCGA-27-1830 
        5.49         8.84         1.22         1.58         2.30         4.80 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1834 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       16.57         9.86        33.14        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2521 TCGA-27-2524 TCGA-27-2527 TCGA-28-1746 TCGA-28-1747 
       24.72        10.39         7.59        14.40         0.20         2.53 
TCGA-28-1750 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        8.32         8.45         1.18         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        0.66         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 
        2.53        11.77         9.80         7.79        13.64         8.52 
TCGA-28-5220 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1980 TCGA-32-1982 
       10.49        15.35        21.07         0.49         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2494 TCGA-32-2615 TCGA-32-2616 
       12.69        14.83        16.93        20.78        15.95         7.33 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-41-2573 
       13.15         3.68        12.59        11.70        10.85         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3915 TCGA-41-4097 TCGA-74-6573 TCGA-74-6577 
        9.53         0.99         6.02         0.20         3.45         4.31 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-4934 
       14.33         7.46         4.54         3.09         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 
       10.78        16.67         3.29         2.70        17.06         8.32 
TCGA-76-6286 TCGA-76-6662 TCGA-76-6663 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
       20.94         9.24         7.69         1.61        17.69         0.07 

      20Q GAIN CNV 20Q GAIN WILD-TYPE 
              0.10               0.07 
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
             92.61             127.56 
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
             9.120              9.735 
[1] "0.1 - 92.6 (9.1)"  "0.1 - 127.6 (9.7)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
      "20Q GAIN CNV"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
      "20Q GAIN CNV" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"20Q GAIN WILD-TYPE"       "20Q GAIN CNV" "20Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
      "20Q GAIN CNV"       "20Q GAIN CNV"       "20Q GAIN CNV" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"       "20Q GAIN CNV" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN CNV         72  102
  20Q GAIN WILD-TYPE  146  232
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  FEMALE           72                146
  MALE            102                232
D36V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  20Q GAIN CNV                                   2                   8
  20Q GAIN WILD-TYPE                             6                  10
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  20Q GAIN CNV                                   164
  20Q GAIN WILD-TYPE                             362
D36V5, multiclass
                                 clus
vv                                20Q GAIN CNV 20Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              2                  6
  TREATED PRIMARY GBM                        8                 10
  UNTREATED PRIMARY (DE NOVO) GBM          164                362
D36V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN CNV        126   48
  20Q GAIN WILD-TYPE  255  123
     clus
vv    20Q GAIN CNV 20Q GAIN WILD-TYPE
  NO           126                255
  YES           48                123

Clustering(37) Variable = 21q gain
D37V1, survival
                    sevent
clus2                  0   1
  21Q GAIN CNV         7  27
  21Q GAIN WILD-TYPE 126 392
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                34                518 
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                27                392 
$`21Q GAIN CNV`
TCGA-02-0001 TCGA-02-0006 TCGA-02-0025 TCGA-02-0055 TCGA-02-0069 TCGA-02-0079 
        9.14        18.35        42.74         2.50        28.70        27.22 
TCGA-02-0113 TCGA-02-0337 TCGA-06-0130 TCGA-06-0140 TCGA-06-0149 TCGA-06-0151 
       92.61        25.12        10.52         0.20         7.82        46.59 
TCGA-06-0164 TCGA-06-0168 TCGA-06-0176 TCGA-06-0237 TCGA-06-1084 TCGA-06-1086 
       56.84        19.04        51.32        10.32         7.43         6.35 
TCGA-06-2565 TCGA-08-0386 TCGA-08-0510 TCGA-12-0822 TCGA-12-1602 TCGA-14-0871 
        6.81        15.72         3.48        23.51         6.38        28.90 
TCGA-14-1034 TCGA-14-1454 TCGA-19-1787 TCGA-27-2526 TCGA-27-2527 TCGA-28-2506 
       15.95        30.15        12.66         2.86        14.40         6.74 
TCGA-28-5218 TCGA-32-2632 TCGA-41-2575 TCGA-41-3915 
        4.21         8.84         9.53         6.02 

$`21Q GAIN WILD-TYPE`
TCGA-02-0003 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 
        4.73        23.18        10.59        35.41        20.71        82.55 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0026 
       20.61        55.86        77.62        20.12        53.06        24.59 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 
       10.36        90.58         2.83        14.14         3.58        10.72 
TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 
       10.52        18.28         6.84        14.70         3.19        15.06 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
       12.59         6.54        19.86         8.35         9.57         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
       19.73        26.43        25.05         5.49        10.19        20.84 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       89.72        22.72         0.23        51.29         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.93         3.48        26.99        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       23.15        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       15.91        25.71         4.37        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0129 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       32.48        18.74        14.07        23.05        22.16        10.75 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
        9.21         2.20        11.74         2.33        20.09        16.70 
TCGA-06-0148 TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        9.80        19.46        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0165 TCGA-06-0166 
        5.46         9.44        11.80         2.56        10.65         5.29 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0177 
        3.12        13.02         0.23         2.20         2.73         1.97 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       53.98        19.00         2.53        40.37        37.02        26.33 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       28.47        14.93        10.29        18.28         4.67         7.04 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        2.60         0.39         6.44         5.46         3.88         4.96 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
       11.84         0.20        12.43        22.49         0.33        18.02 
TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       11.80        14.96        10.29         5.52         0.26        70.52 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        4.67         8.05         0.16        35.01        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        4.47         9.63         2.04        23.57         9.37        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.53         5.36         2.70         2.14         0.92         9.17 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
        8.91         6.71         7.17        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
       20.94         3.58        26.79         8.65         7.86        13.58 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
        4.18         1.08         0.76         4.90         9.27         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        8.52         5.95         5.98         4.37         0.43         9.37 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.21         3.52         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         6.71         2.73         3.75         6.12         4.54 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        3.91         7.76         5.36         1.45         0.49         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.28        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
       22.68        34.75         3.91       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        6.41        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        0.95         9.17        10.85         3.19        10.59         0.30 
TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
        0.56        11.77         8.52        18.44        58.19         1.28 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.72         4.80         6.51        15.98        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 
       14.01        14.40         1.61        10.39         5.95        10.52 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.10         5.49         9.11        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 
       24.76        18.48        10.62        27.78        38.76         8.91 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.56         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       11.97        11.38        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3646 
        3.39         9.44        25.28        13.61        59.41        43.20 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       25.78        11.54        10.95        11.77        34.52        11.74 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 
       13.08         3.22         2.01        15.09        11.97         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 
        6.18        23.05         2.24        11.24        13.74         3.25 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 
        1.35         5.39         2.89        16.50        26.33         2.04 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       19.30         0.79         1.38         1.12         3.75        32.02 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 
       58.78        23.11         7.10         1.15         0.92        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 
        6.12        12.43         0.99         1.94        17.75        17.82 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.13        17.49         7.96         3.75 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
        3.39         9.86        19.10        53.19         5.49         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        9.93        26.07        16.31         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
       10.75         9.07         5.95        12.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        3.48         7.13         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        16.47         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        11.28         8.02        18.64         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        7.96         1.78         6.51         5.39         5.29         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
       10.03        13.87         9.73        31.33         7.10         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.84         1.22         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2528 TCGA-28-1746 
       10.39        10.39        16.08         7.59        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.17         8.32         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 
        1.51         2.83         0.13         0.66         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26         3.91         9.04        15.55         2.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 
        9.80        14.20         7.79        13.64         8.52        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        5.42        15.35        21.07         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.83        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2634 
       12.23        20.78        14.99        15.95         7.33         8.88 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
        7.36        13.15         3.68        12.59        11.70        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-3392 TCGA-41-3393 
        5.42         0.85        13.35         8.94         0.99         4.44 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        11.54         7.73         3.45        17.52         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.46         4.77         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.14         2.53        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.32        20.94         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

      21Q GAIN CNV 21Q GAIN WILD-TYPE 
              0.20               0.07 
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
             92.61             127.56 
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
             11.59               9.42 
[1] "0.2 - 92.6 (11.6)" "0.1 - 127.6 (9.4)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV"       "21Q GAIN CNV" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV"       "21Q GAIN CNV" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"       "21Q GAIN CNV" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV"       "21Q GAIN CNV" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"21Q GAIN WILD-TYPE"       "21Q GAIN CNV" "21Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
      "21Q GAIN CNV" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN CNV         14   20
  21Q GAIN WILD-TYPE  204  314
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  FEMALE           14                204
  MALE             20                314
D37V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  21Q GAIN CNV                                   2                   1
  21Q GAIN WILD-TYPE                             6                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  21Q GAIN CNV                                    31
  21Q GAIN WILD-TYPE                             495
D37V5, multiclass
                                 clus
vv                                21Q GAIN CNV 21Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              2                  6
  TREATED PRIMARY GBM                        1                 17
  UNTREATED PRIMARY (DE NOVO) GBM           31                495
D37V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN CNV         24   10
  21Q GAIN WILD-TYPE  357  161
     clus
vv    21Q GAIN CNV 21Q GAIN WILD-TYPE
  NO            24                357
  YES           10                161

Clustering(38) Variable = 22q gain
D38V1, survival
                    sevent
clus2                  0   1
  22Q GAIN CNV         2   9
  22Q GAIN WILD-TYPE 131 410
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                11                541 
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                 9                410 
$`22Q GAIN CNV`
TCGA-02-0069 TCGA-06-0209 TCGA-06-0409 TCGA-06-1086 TCGA-06-2569 TCGA-08-0510 
       28.70         3.88        70.52         6.35         0.43         3.48 
TCGA-12-0827 TCGA-12-1099 TCGA-12-1602 TCGA-15-1449 TCGA-28-5218 
       38.76         3.39         6.38         5.49         4.21 

$`22Q GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.70         3.19        15.06        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.29        15.42        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        32.48        10.52        18.74        14.07        23.05 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       22.16        10.75         0.20         9.21         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        16.70         9.80         7.82        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       46.59        11.80        12.79         8.65         3.19         5.46 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         2.56        56.84        10.65         5.29 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.04         3.12        13.02         0.23         2.20         2.73 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       51.32         1.97        53.98        19.00         2.53        40.37 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       37.02        26.33        28.47        14.93        10.29        18.28 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.04         2.60         0.39         6.44         5.46 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        4.96        11.84         0.20        12.43        22.49         0.33 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       18.02        10.32        11.80        14.96        10.29         5.52 
TCGA-06-0402 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
        0.26         4.67         8.05         0.16        35.01        12.33 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        3.22         4.47         9.63         2.04        23.57         9.37 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       22.29        19.53         5.36         2.70         2.14         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        9.17         8.91         6.71         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
        5.42        20.94         7.43         3.58        26.79         8.65 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        7.86        13.58         4.18         1.08         0.76         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        9.27         2.83         8.52         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        4.37         9.37        11.21         3.52         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         6.71         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.12         4.54         3.91         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        0.49         7.36         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 
        4.77         4.96        22.68        34.75         3.91       108.82 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         4.34        13.78        10.39         7.59         3.39 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       53.79         1.28         6.41        15.06        22.52        14.70 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 
       35.64        19.50         0.95         9.17        10.85        15.72 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0514 
        3.19        10.59         0.30         0.56        11.77         8.52 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       18.44        58.19         1.28        10.72         4.80         6.51 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
       15.98        17.29         5.52        14.01        14.40         1.61 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       10.39         5.95        10.52         7.17        65.88         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        24.13         6.08         2.63        18.08 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.37        12.43        53.10        43.10         5.49         9.11 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.83        14.27        91.73        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       23.51        27.78         8.91        20.58       127.56         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        6.21        30.54        21.63        11.97        11.38        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
        9.11        14.53         3.98         9.44        25.28        13.61 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.41        43.20        25.78        11.54        10.95        11.77 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       34.52        11.74        13.08         3.22         2.01        15.09 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.18        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 
       13.74         3.25         1.35         5.39         2.89        16.50 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       26.33         2.04        28.90        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
       12.43         0.99         1.94        17.75        17.82         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 
        5.88         7.13        17.49         7.96         3.75         3.39 
TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
        9.86        19.10        53.19         3.91         9.93        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       16.31         4.27        29.00         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        3.65        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.43        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 
        5.95        12.95         4.64        25.38         3.48         7.13 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
        7.53         0.16         4.08        16.47         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        11.28         8.02        18.64         4.73         7.96 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 
        1.78         6.51         5.39         5.29         5.42        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       13.87         9.73        31.33         7.10         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.18         1.51         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77         9.80        14.20         7.79        13.64 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        8.52        10.49         5.42        15.35        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.83        16.93        12.23        20.78        14.99        15.95 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
        7.33         8.84         8.88         7.36        13.15         3.68 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        11.70        10.85         5.42         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44         6.02         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        17.52         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.46         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.32        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

      22Q GAIN CNV 22Q GAIN WILD-TYPE 
              0.43               0.07 
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
             70.52             127.56 
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
              5.49               9.67 
[1] "0.4 - 70.5 (5.5)"  "0.1 - 127.6 (9.7)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
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        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
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        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
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        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
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        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
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        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
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        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
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        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
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        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
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        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
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        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
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        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
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        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
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        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
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        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"       "22Q GAIN CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
      "22Q GAIN CNV" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"22Q GAIN WILD-TYPE"       "22Q GAIN CNV" "22Q GAIN WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D38V2, continuous
D38V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN CNV          4    7
  22Q GAIN WILD-TYPE  214  327
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  FEMALE            4                214
  MALE              7                327
D38V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  22Q GAIN CNV                                   0                   0
  22Q GAIN WILD-TYPE                             8                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  22Q GAIN CNV                                    11
  22Q GAIN WILD-TYPE                             515
D38V5, multiclass
                                 clus
vv                                22Q GAIN CNV 22Q GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0                  8
  TREATED PRIMARY GBM                        0                 18
  UNTREATED PRIMARY (DE NOVO) GBM           11                515
D38V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN CNV          9    2
  22Q GAIN WILD-TYPE  372  169
     clus
vv    22Q GAIN CNV 22Q GAIN WILD-TYPE
  NO             9                372
  YES            2                169

Clustering(39) Variable = Xq gain
D39V1, survival
                   sevent
clus2                 0   1
  XQ GAIN CNV         0   3
  XQ GAIN WILD-TYPE 133 416
      XQ GAIN CNV XQ GAIN WILD-TYPE 
                3               549 
      XQ GAIN CNV XQ GAIN WILD-TYPE 
                3               416 
$`XQ GAIN CNV`
TCGA-02-0058 TCGA-19-1787 TCGA-32-4210 
        8.35        12.66         3.68 

$`XQ GAIN WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.70         3.19        15.06        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
       19.86         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.29        15.42        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        32.48        10.52        18.74        14.07        23.05 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       22.16        10.75         0.20         9.21         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        16.70         9.80         7.82        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       46.59        11.80        12.79         8.65         3.19         5.46 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         2.56        56.84        10.65         5.29 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.04         3.12        13.02         0.23         2.20         2.73 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       51.32         1.97        53.98        19.00         2.53        40.37 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       37.02        26.33        28.47        14.93        10.29        18.28 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.04         2.60         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        3.88         4.96        11.84         0.20        12.43        22.49 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 
        0.33        18.02        10.32        11.80        14.96        10.29 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
        5.52         0.26        70.52         4.67         8.05         0.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.01        12.33         3.22         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57         9.37        22.29        19.53         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.14         0.92         9.17         8.91         6.71         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       22.98         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        3.58        26.79         8.65         7.86        13.58         4.18 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08         0.76         4.90         9.27         2.83         8.52 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95         6.81         5.98         4.37         0.43         9.37 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.21         3.52         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         6.71         2.73         3.75         6.12         4.54 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        3.91         7.76         5.36         1.45         0.49         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.28        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
       22.68        34.75         3.91       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        6.41        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        0.95         9.17        10.85        15.72         3.19        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
        0.30         0.56         3.48        11.77         8.52        18.44 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       58.19         1.28        10.72         4.80         6.51        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       17.29         5.52        14.01        14.40         1.61        10.39 
TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
        5.95        10.52         7.17        65.88         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        24.13         6.08         2.63        18.08        28.37 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       12.43        53.10        43.10         5.49         9.11        14.83 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.27        91.73        24.76        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       27.78        38.76         8.91        20.58       127.56         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        6.21        30.54        21.63        11.97        11.38        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 
        9.11        14.53         3.98         3.39         9.44        25.28 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       13.61         6.38        59.41        43.20        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.95        11.77        34.52        11.74        13.08         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        2.01        15.09        11.97         0.95         6.18        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
        2.24        11.24        13.74         3.25         1.35         5.39 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 
        2.89        16.50        26.33         2.04        28.90        15.95 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       19.30         0.79         1.38         1.12         3.75        32.02 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
       58.78        23.11         7.10         1.15        30.15         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
       40.93         6.12        12.43         0.99         1.94        17.75 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.82         7.63         5.88         7.13        17.49         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 
        3.75         3.39         9.86        19.10        53.19         5.49 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 
        3.91         9.93        26.07        16.31         4.27        29.00 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        0.82         9.90        13.35         3.65        18.28        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
        6.41        11.77        21.86         8.61         0.43        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 
        3.39        10.75         9.07         5.95        12.95         4.64 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
       25.38         3.48         7.13         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        16.47 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73         7.96         1.78         6.51         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
        5.42        10.03        13.87         9.73        31.33         7.10 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        9.37         9.40        14.86         5.49         8.84         1.22 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.30         4.80        16.57         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       18.25        33.14        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.72        10.39        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.75         0.20         2.53         9.17         8.32 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.59         8.45         1.18         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        0.66         6.74         4.77         7.30         5.26         3.91 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
        9.04        15.55         2.53        11.77         9.80        14.20 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
        7.79        13.64         4.21         8.52        10.49         5.42 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
       15.35        21.07         0.49         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        1.18         4.67        12.69        14.83        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 
       20.78        14.99        15.95         7.33         8.84         8.88 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
        7.36        13.15        12.59        11.70        10.85         5.42 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
        6.02         0.20        11.54         7.73         3.45        17.52 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        4.31        14.33         8.22         7.46         4.77         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.09         3.65         9.14         2.53        10.78        16.67 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.32        20.94 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03         0.23         9.24         7.69         7.76 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.69         0.07 

      XQ GAIN CNV XQ GAIN WILD-TYPE 
             3.68              0.07 
      XQ GAIN CNV XQ GAIN WILD-TYPE 
            12.66            127.56 
      XQ GAIN CNV XQ GAIN WILD-TYPE 
             8.35              9.57 
[1] "3.7 - 12.7 (8.3)"  "0.1 - 127.6 (9.6)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"       "XQ GAIN CNV" "XQ GAIN WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
      "XQ GAIN CNV" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
[1] "hr=" "2.3"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN CNV          1    2
  XQ GAIN WILD-TYPE  217  332
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  FEMALE           1               217
  MALE             2               332
D39V4, continuous
[1] "Remove cluster labels:" "XQ GAIN CNV"           
clus
      XQ GAIN CNV XQ GAIN WILD-TYPE 
                2               407 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0051        TCGA-02-0052        TCGA-02-0054 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0055        TCGA-02-0057        TCGA-02-0059        TCGA-02-0060 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0064        TCGA-02-0068        TCGA-02-0069        TCGA-02-0070 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0071        TCGA-02-0074        TCGA-02-0075        TCGA-02-0079 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0080        TCGA-02-0083        TCGA-02-0084        TCGA-02-0085 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0086        TCGA-02-0087        TCGA-02-0089        TCGA-02-0099 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0102        TCGA-02-0104        TCGA-02-0106        TCGA-02-0107 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0111        TCGA-02-0113        TCGA-02-0114        TCGA-02-0115 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0116        TCGA-02-0289        TCGA-02-0290        TCGA-02-0317 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0321        TCGA-02-0324        TCGA-02-0325        TCGA-02-0326 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0330        TCGA-02-0332        TCGA-02-0337        TCGA-02-0338 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0339        TCGA-02-0422        TCGA-02-0430        TCGA-02-0432 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-0440        TCGA-02-0446        TCGA-02-0451        TCGA-02-0456 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-2466        TCGA-02-2470        TCGA-02-2483        TCGA-02-2485 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-02-2486        TCGA-06-0125        TCGA-06-0126        TCGA-06-0127 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0128        TCGA-06-0129        TCGA-06-0130        TCGA-06-0138 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0141        TCGA-06-0143        TCGA-06-0149 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0154        TCGA-06-0155        TCGA-06-0157        TCGA-06-0158 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0162        TCGA-06-0164        TCGA-06-0168        TCGA-06-0169 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0171        TCGA-06-0174        TCGA-06-0175        TCGA-06-0176 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0177        TCGA-06-0179        TCGA-06-0182        TCGA-06-0184 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0185        TCGA-06-0187        TCGA-06-0188        TCGA-06-0190 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0195        TCGA-06-0208        TCGA-06-0211 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0214        TCGA-06-0216        TCGA-06-0221        TCGA-06-0238 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0241        TCGA-06-0644        TCGA-06-0646        TCGA-06-0648 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0743        TCGA-06-0744        TCGA-06-0745        TCGA-06-0747 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0750        TCGA-06-0875        TCGA-06-0876        TCGA-06-0878 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-0879        TCGA-06-0881        TCGA-06-0882        TCGA-06-0939 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-1084        TCGA-06-1086        TCGA-06-1087        TCGA-06-1800 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-1801        TCGA-06-1802        TCGA-06-1805        TCGA-06-2557 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-5858        TCGA-06-5859        TCGA-06-6388        TCGA-06-6389 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-06-6390        TCGA-06-6695        TCGA-06-6697        TCGA-06-6700 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0244        TCGA-08-0245        TCGA-08-0246        TCGA-08-0344 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0345        TCGA-08-0346        TCGA-08-0347        TCGA-08-0348 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0353        TCGA-08-0354 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0355        TCGA-08-0356        TCGA-08-0357        TCGA-08-0358 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0375        TCGA-08-0380        TCGA-08-0386        TCGA-08-0389 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0390        TCGA-08-0509        TCGA-08-0510        TCGA-08-0512 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0514        TCGA-08-0517        TCGA-08-0518        TCGA-08-0521 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-08-0524        TCGA-08-0525        TCGA-08-0529        TCGA-08-0531 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0615        TCGA-12-0616        TCGA-12-0618        TCGA-12-0619 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0620        TCGA-12-0653        TCGA-12-0656        TCGA-12-0662 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0670        TCGA-12-0688        TCGA-12-0691        TCGA-12-0692 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0703        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0819        TCGA-12-0820        TCGA-12-0821        TCGA-12-0822 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-0827        TCGA-12-0828        TCGA-12-0829        TCGA-12-1088 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1090        TCGA-12-1091        TCGA-12-1092        TCGA-12-1093 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1094        TCGA-12-1095        TCGA-12-1096        TCGA-12-1097 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1098        TCGA-12-1099        TCGA-12-1599        TCGA-12-1600 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5299        TCGA-12-5301        TCGA-14-0736 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0740        TCGA-14-0783        TCGA-14-0786        TCGA-14-0787 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0789        TCGA-14-0790        TCGA-14-0812        TCGA-14-0813 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0817        TCGA-14-0862        TCGA-14-0865        TCGA-14-0866 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-0867        TCGA-14-0871        TCGA-14-1034        TCGA-14-1037 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1043        TCGA-14-1395        TCGA-14-1396        TCGA-14-1401 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1402        TCGA-14-1450        TCGA-14-1451        TCGA-14-1452 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1453        TCGA-14-1454        TCGA-14-1456        TCGA-14-1458 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1459        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-19-0960 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-0962        TCGA-19-0964        TCGA-19-1386        TCGA-19-1387 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-1389        TCGA-19-1390        TCGA-19-1392        TCGA-19-1786 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-1789        TCGA-19-2619        TCGA-19-2620        TCGA-19-2623 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-2631        TCGA-19-5947        TCGA-19-5950        TCGA-19-5951 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-5952        TCGA-19-5954        TCGA-19-5956        TCGA-19-5958 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1440 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5139        TCGA-26-6173 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-26-6174        TCGA-27-1830        TCGA-27-1831        TCGA-27-1832 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-1833        TCGA-27-1834        TCGA-27-1835        TCGA-27-1836 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-1837        TCGA-27-1838        TCGA-27-2518        TCGA-27-2519 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-2521        TCGA-27-2523        TCGA-27-2524        TCGA-27-2526 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-27-2527        TCGA-27-2528        TCGA-28-1746        TCGA-28-1749 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1755 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5211        TCGA-28-5213 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-5214        TCGA-28-5215        TCGA-28-5216        TCGA-28-5219 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-28-5220        TCGA-32-1976        TCGA-32-1982        TCGA-32-1986 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-32-2615        TCGA-41-2571        TCGA-41-2573        TCGA-41-2575 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  XQ GAIN CNV                                   0                   1
  XQ GAIN WILD-TYPE                             8                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  XQ GAIN CNV                                     2
  XQ GAIN WILD-TYPE                             524
D39V5, multiclass
                                 clus
vv                                XQ GAIN CNV XQ GAIN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       1                17
  UNTREATED PRIMARY (DE NOVO) GBM           2               524
D39V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN CNV          2    1
  XQ GAIN WILD-TYPE  379  170
     clus
vv    XQ GAIN CNV XQ GAIN WILD-TYPE
  NO            2               379
  YES           1               170

Clustering(40) Variable = 1p loss
D40V1, survival
                   sevent
clus2                 0   1
  1P LOSS CNV         0   5
  1P LOSS WILD-TYPE 133 414
      1P LOSS CNV 1P LOSS WILD-TYPE 
                5               547 
      1P LOSS CNV 1P LOSS WILD-TYPE 
                5               414 
$`1P LOSS CNV`
TCGA-02-0028 TCGA-08-0244 TCGA-08-0344 TCGA-14-0740 TCGA-19-1390 
       90.58        22.68       108.82        11.97        25.38 

$`1P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 
       53.06        42.74        24.59        10.36         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.29        15.42        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        32.48        10.52        18.74        14.07        23.05 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       22.16        10.75         0.20         9.21         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        16.70         9.80         7.82        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       46.59        11.80        12.79         8.65         3.19         5.46 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         2.56        56.84        10.65         5.29 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.04         3.12        13.02         0.23         2.20         2.73 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       51.32         1.97        53.98        19.00         2.53        40.37 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       37.02        26.33        28.47        14.93        10.29        18.28 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.04         2.60         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        3.88         4.96        11.84         0.20        12.43        22.49 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 
        0.33        18.02        10.32        11.80        14.96        10.29 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
        5.52         0.26        70.52         4.67         8.05         0.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.01        12.33         3.22         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57         9.37        22.29        19.53         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.14         0.92         9.17         8.91         6.71         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       22.98         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        3.58        26.79         8.65         7.86        13.58         4.18 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08         0.76         4.90         9.27         2.83         8.52 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95         6.81         5.98         4.37         0.43         9.37 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.21         3.52         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         6.71         2.73         3.75         6.12         4.54 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        3.91         7.76         5.36         1.45         0.49         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.28        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
       34.75         3.91         1.74         4.34        13.78        10.39 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
        7.59         3.39        53.79         1.28         6.41        15.06 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       22.52        14.70        35.64        19.50         0.95         9.17 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       10.85        15.72         3.19        10.59         0.30         0.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
        3.48        11.77         8.52        18.44        58.19         1.28 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.72         4.80         6.51        15.98        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 
       14.01        14.40         1.61        10.39         5.95        10.52 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.10         5.49         9.11        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.76        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.91        20.58       127.56         5.82         6.21        30.54 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.63        11.97        11.38        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
        3.98         3.39         9.44        25.28        13.61         6.38 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.41        43.20        25.78        11.54        10.95        11.77 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       34.52        11.74        13.08         3.22         2.01        15.09 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.18        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        3.25         1.35         5.39         2.89        16.50        26.33 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
        2.04        28.90        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.02        58.78        23.11         7.10 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        1.15        30.15         0.92        40.93         6.12        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
        0.99         1.94        17.75        17.82         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 
        7.13        17.49         7.96         3.75         3.39         9.86 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
       19.10        53.19         5.49         3.91         9.93        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       16.31         4.27        29.00         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        3.65        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.43        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 
        5.95        12.95         4.64         3.48         7.13        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        0.16         4.08        16.47         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        6.51         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
        9.73        31.33         7.10         9.37         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.84         1.22         1.58         7.92         2.30 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        4.80        16.57         9.86        18.25        33.14        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.72        10.39        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.17         8.32         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.51         2.83         0.13         0.66         6.74         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26         3.91         9.04        15.55         2.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77         9.80        14.20         7.79        13.64         4.21 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        8.52        10.49         5.42        15.35        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.83        16.93        12.23        20.78        14.99        15.95 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
        7.33         8.84         8.88         7.36        13.15         3.68 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        11.70        10.85         5.42         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44         6.02         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        17.52         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.46         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.32        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

      1P LOSS CNV 1P LOSS WILD-TYPE 
            11.97              0.07 
      1P LOSS CNV 1P LOSS WILD-TYPE 
           108.82            127.56 
      1P LOSS CNV 1P LOSS WILD-TYPE 
            25.38              9.44 
[1] "12.0 - 108.8 (25.4)" "0.1 - 127.6 (9.4)"  
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
      "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE"       "1P LOSS CNV" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"       "1P LOSS CNV" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
[1] "hr=" "2.6"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS CNV          1    4
  1P LOSS WILD-TYPE  217  330
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  FEMALE           1               217
  MALE             4               330
D40V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  1P LOSS CNV                                   0                   1
  1P LOSS WILD-TYPE                             8                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  1P LOSS CNV                                     4
  1P LOSS WILD-TYPE                             522
D40V5, multiclass
                                 clus
vv                                1P LOSS CNV 1P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       1                17
  UNTREATED PRIMARY (DE NOVO) GBM           4               522
D40V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS CNV          4    1
  1P LOSS WILD-TYPE  377  170
     clus
vv    1P LOSS CNV 1P LOSS WILD-TYPE
  NO            4               377
  YES           1               170

Clustering(41) Variable = 1q loss
D41V1, survival
                   sevent
clus2                 0   1
  1Q LOSS CNV         0   4
  1Q LOSS WILD-TYPE 133 415
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
                4               548 
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
                4               415 
$`1Q LOSS CNV`
TCGA-08-0244 TCGA-14-0740 TCGA-14-1034 TCGA-19-1390 
       22.68        11.97        15.95        25.38 

$`1Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.70         3.19        15.06        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       28.70        25.05         5.49        10.19        20.84        27.22 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       89.72        22.72         0.23        51.29         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.93         3.48        26.99        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       23.15        92.61        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.90        17.69        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.86         7.69        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        0.16        15.91        25.71         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.24 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
       16.18         3.35        16.80        12.92        15.29        15.42 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       16.18         2.70         0.26         4.04        47.31         0.10 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        3.55        22.72        32.48        10.52        18.74        14.07 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       23.05        22.16        10.75         0.20         9.21         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        16.70         9.80         7.82 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
        5.46         9.44        11.80         2.56        56.84        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.29        19.04         3.12        13.02         0.23         2.20 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        2.73        51.32         1.97        53.98        19.00         2.53 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       40.37        37.02        26.33        28.47        14.93        10.29 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       18.28         4.67         7.04         2.60         0.39         6.44 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        5.46         3.88         4.96        11.84         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 
       22.49         0.33        18.02        10.32        11.80        14.96 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
       10.29         5.52         0.26        70.52         4.67         8.05 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        0.16        35.01        12.33         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.04        23.57         9.37        22.29        19.53         5.36 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.14         0.92         9.17         8.91         6.71 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        22.98         5.85         5.42        20.94         7.43 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        6.35         3.58        26.79         8.65         7.86        13.58 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
        4.18         1.08         0.76         4.90         9.27         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
        8.52         5.95         6.81         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        9.37        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         6.71         2.73         3.75         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
        4.96        34.75         3.91       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        6.41        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        0.95         9.17        10.85        15.72         3.19        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
        0.30         0.56         3.48        11.77         8.52        18.44 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       58.19         1.28        10.72         4.80         6.51        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       17.29         5.52        14.01        14.40         1.61        10.39 
TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
        5.95        10.52         7.17        65.88         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        24.13         6.08         2.63        18.08        28.37 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       12.43        53.10        43.10         5.49         9.11        14.83 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.27        91.73        24.76        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       27.78        38.76         8.91        20.58       127.56         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        6.21        30.54        21.63        11.97        11.38        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 
        9.11        14.53         3.98         3.39         9.44        25.28 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       13.61         6.38        59.41        43.20        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.95        11.77        34.52        11.74        13.08         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
        2.01        15.09         0.95         6.18        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
       11.24        13.74         3.25         1.35         5.39         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 
       16.50        26.33         2.04        28.90        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
       12.43         0.99         1.94        17.75        17.82         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 
        5.88         7.13        17.49         7.96         3.75         3.39 
TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 
        9.86        19.10        53.19         5.49         3.91         9.93 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
       26.07        16.31         4.27        29.00         0.82         9.90 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       13.35         3.65        18.28        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       21.86         8.61         0.43        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 
        9.07         5.95        12.95         4.64         3.48         7.13 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
        7.53         0.16         4.08        16.47         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        11.28         8.02        18.64         4.73         7.96 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 
        1.78         6.51         5.39         5.29         5.42        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       13.87         9.73        31.33         7.10         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.18         1.51         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77         9.80        14.20         7.79        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        4.21         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.95         7.33         8.84         8.88         7.36        13.15 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.68        12.59        11.70        10.85         5.42         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44         6.02 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        11.54         7.73         3.45        17.52         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.46         4.77         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.14         2.53        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.32        20.94         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

      1Q LOSS CNV 1Q LOSS WILD-TYPE 
            11.97              0.07 
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
            25.38            127.56 
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
           19.315             9.440 
[1] "12.0 - 25.4 (19.3)" "0.1 - 127.6 (9.4)" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
      "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
      "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"1Q LOSS WILD-TYPE"       "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
      "1Q LOSS CNV" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"       "1Q LOSS CNV" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS CNV          2    2
  1Q LOSS WILD-TYPE  216  332
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  FEMALE           2               216
  MALE             2               332
D41V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  1Q LOSS CNV                                   0                   0
  1Q LOSS WILD-TYPE                             8                  18
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  1Q LOSS CNV                                     4
  1Q LOSS WILD-TYPE                             522
D41V5, multiclass
                                 clus
vv                                1Q LOSS CNV 1Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       0                18
  UNTREATED PRIMARY (DE NOVO) GBM           4               522
D41V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS CNV          3    1
  1Q LOSS WILD-TYPE  378  170
     clus
vv    1Q LOSS CNV 1Q LOSS WILD-TYPE
  NO            3               378
  YES           1               170

Clustering(42) Variable = 2p loss
D42V1, survival
                   sevent
clus2                 0   1
  2P LOSS CNV         3   7
  2P LOSS WILD-TYPE 130 412
      2P LOSS CNV 2P LOSS WILD-TYPE 
               10               542 
      2P LOSS CNV 2P LOSS WILD-TYPE 
                7               412 
$`2P LOSS CNV`
TCGA-06-0152 TCGA-06-0414 TCGA-06-5416 TCGA-06-5856 TCGA-12-0826 TCGA-12-1600 
       11.80        35.01         6.71         3.75        27.78        13.61 
TCGA-15-1447 TCGA-16-0850 TCGA-19-1390 TCGA-19-5956 
       53.19        16.31        25.38         6.51 

$`2P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.70         3.19        15.06        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       28.70        25.05         5.49        10.19        20.84        27.22 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       89.72        22.72         0.23        51.29         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.93         3.48        26.99        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       23.15        92.61        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.90        17.69        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.86         7.69        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        0.16        15.91        25.71         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.24 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
       16.18         3.35        16.80        12.92        15.29        15.42 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       16.18         2.70         0.26         4.04        47.31         0.10 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        3.55        22.72        32.48        10.52        18.74        14.07 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       23.05        22.16        10.75         0.20         9.21         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        16.70         9.80         7.82 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       19.46        46.59        12.79         8.65         3.19         5.46 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         2.56        56.84        10.65         5.29 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.04         3.12        13.02         0.23         2.20         2.73 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       51.32         1.97        53.98        19.00         2.53        40.37 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       37.02        26.33        28.47        14.93        10.29        18.28 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.04         2.60         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        3.88         4.96        11.84         0.20        12.43        22.49 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 
        0.33        18.02        10.32        11.80        14.96        10.29 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
        5.52         0.26        70.52         4.67         8.05         0.16 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.33         3.22         4.47         9.63         2.04        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        9.37        22.29        19.53         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92         9.17         8.91         6.71         7.17        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
        5.85         5.42        20.94         7.43         6.35         3.58 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
       26.79         8.65         7.86        13.58         4.18         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        0.76         4.90         9.27         2.83         8.52         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        6.81         5.98         4.37         0.43         9.37        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.52         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        2.73         6.12         4.54         3.91         7.76         5.36 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        1.45         0.49         7.36         8.28        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 
        1.55         4.77         4.96        22.68        34.75         3.91 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      108.82         1.74         4.34        13.78        10.39         7.59 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
        3.39        53.79         1.28         6.41        15.06        22.52 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       14.70        35.64        19.50         0.95         9.17        10.85 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       15.72         3.19        10.59         0.30         0.56         3.48 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
       11.77         8.52        18.44        58.19         1.28        10.72 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         6.51        15.98        17.29         5.52        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 
       14.40         1.61        10.39         5.95        10.52         7.17 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       65.88         0.10        38.17        25.97        24.13         6.08 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        2.63        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        5.49         9.11        14.83        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       18.48        10.62        23.51        38.76         8.91        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
      127.56         5.82         6.21        30.54        21.63        11.97 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
       11.38        15.85         9.11        14.53         3.98         3.39 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
        9.44        25.28         6.38        59.41        43.20        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       11.54        10.95        11.77        34.52        11.74        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.01        15.09        11.97         0.95         6.18 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.74         3.25         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
        5.39         2.89        16.50        26.33         2.04        28.90 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.02        58.78        23.11         7.10         1.15        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.93         6.12        12.43         0.99         1.94 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.75        17.82         7.63         5.88         7.13        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 
        7.96         3.75         3.39         9.86        19.10         5.49 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        3.91         9.93        26.07         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1392 
       10.75         9.07         5.95        12.95         4.64         3.48 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        7.13        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        16.47         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        11.28         8.02        18.64         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 
        7.96         1.78         5.39         5.29         5.42        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       13.87         9.73        31.33         7.10         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.18         1.51         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77         9.80        14.20         7.79        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        4.21         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.95         7.33         8.84         8.88         7.36        13.15 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.68        12.59        11.70        10.85         5.42         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44         6.02 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        11.54         7.73         3.45        17.52         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.46         4.77         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.14         2.53        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.32        20.94         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

      2P LOSS CNV 2P LOSS WILD-TYPE 
             3.75              0.07 
      2P LOSS CNV 2P LOSS WILD-TYPE 
            53.19            127.56 
      2P LOSS CNV 2P LOSS WILD-TYPE 
            14.96              9.44 
[1] "3.8 - 53.2 (15.0)" "0.1 - 127.6 (9.4)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
      "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"       "2P LOSS CNV" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"2P LOSS WILD-TYPE"       "2P LOSS CNV" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS CNV          6    4
  2P LOSS WILD-TYPE  212  330
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  FEMALE           6               212
  MALE             4               330
D42V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  2P LOSS CNV                                   0                   0
  2P LOSS WILD-TYPE                             8                  18
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  2P LOSS CNV                                    10
  2P LOSS WILD-TYPE                             516
D42V5, multiclass
                                 clus
vv                                2P LOSS CNV 2P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       0                18
  UNTREATED PRIMARY (DE NOVO) GBM          10               516
D42V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS CNV          7    3
  2P LOSS WILD-TYPE  374  168
     clus
vv    2P LOSS CNV 2P LOSS WILD-TYPE
  NO            7               374
  YES           3               168

Clustering(43) Variable = 2q loss
D43V1, survival
                   sevent
clus2                 0   1
  2Q LOSS CNV         3   6
  2Q LOSS WILD-TYPE 130 413
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
                9               543 
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
                6               413 
$`2Q LOSS CNV`
TCGA-06-0152 TCGA-06-0414 TCGA-06-5416 TCGA-06-5856 TCGA-12-1600 TCGA-15-1447 
       11.80        35.01         6.71         3.75        13.61        53.19 
TCGA-16-0850 TCGA-19-1390 TCGA-19-5956 
       16.31        25.38         6.51 

$`2Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.70         3.19        15.06        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       28.70        25.05         5.49        10.19        20.84        27.22 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       89.72        22.72         0.23        51.29         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.93         3.48        26.99        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       23.15        92.61        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.90        17.69        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.86         7.69        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        0.16        15.91        25.71         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.24 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
       16.18         3.35        16.80        12.92        15.29        15.42 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       16.18         2.70         0.26         4.04        47.31         0.10 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        3.55        22.72        32.48        10.52        18.74        14.07 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       23.05        22.16        10.75         0.20         9.21         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        16.70         9.80         7.82 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       19.46        46.59        12.79         8.65         3.19         5.46 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         2.56        56.84        10.65         5.29 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.04         3.12        13.02         0.23         2.20         2.73 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       51.32         1.97        53.98        19.00         2.53        40.37 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       37.02        26.33        28.47        14.93        10.29        18.28 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.04         2.60         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        3.88         4.96        11.84         0.20        12.43        22.49 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 
        0.33        18.02        10.32        11.80        14.96        10.29 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
        5.52         0.26        70.52         4.67         8.05         0.16 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.33         3.22         4.47         9.63         2.04        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        9.37        22.29        19.53         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92         9.17         8.91         6.71         7.17        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
        5.85         5.42        20.94         7.43         6.35         3.58 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
       26.79         8.65         7.86        13.58         4.18         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        0.76         4.90         9.27         2.83         8.52         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        6.81         5.98         4.37         0.43         9.37        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.52         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        2.73         6.12         4.54         3.91         7.76         5.36 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        1.45         0.49         7.36         8.28        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 
        1.55         4.77         4.96        22.68        34.75         3.91 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      108.82         1.74         4.34        13.78        10.39         7.59 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
        3.39        53.79         1.28         6.41        15.06        22.52 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       14.70        35.64        19.50         0.95         9.17        10.85 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       15.72         3.19        10.59         0.30         0.56         3.48 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
       11.77         8.52        18.44        58.19         1.28        10.72 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         6.51        15.98        17.29         5.52        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 
       14.40         1.61        10.39         5.95        10.52         7.17 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       65.88         0.10        38.17        25.97        24.13         6.08 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        2.63        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        5.49         9.11        14.83        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 
       18.48        10.62        23.51        27.78        38.76         8.91 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.56         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       11.97        11.38        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
        3.39         9.44        25.28         6.38        59.41        43.20 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       25.78        11.54        10.95        11.77        34.52        11.74 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 
       13.08         3.22         2.01        15.09        11.97         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 
        6.18        23.05         2.24        11.24        13.74         3.25 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 
        1.35         5.39         2.89        16.50        26.33         2.04 
TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
       28.90        15.95        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.02        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
       30.15         0.92        40.93         6.12        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        1.94        17.75        17.82         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 
       17.49         7.96         3.75         3.39         9.86        19.10 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 TCGA-16-1045 
        5.49         3.91         9.93        26.07         4.27        29.00 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        0.82         9.90        13.35         3.65        18.28        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
        6.41        11.77        21.86         8.61         0.43        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 
        3.39        10.75         9.07         5.95        12.95         4.64 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.48         7.13        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        16.47 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        4.73         7.96         1.78         5.39         5.29         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
       10.03        13.87         9.73        31.33         7.10         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.84         1.22         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       10.39        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.75         0.20         2.53         9.17         8.32         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.45         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        6.74         4.77         7.30         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.55         2.53        11.77         9.80        14.20         7.79 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         4.21         8.52        10.49         5.42        15.35 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.83        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       14.99        15.95         7.33         8.84         8.88         7.36 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       13.15         3.68        12.59        11.70        10.85         5.42 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
        6.02         0.20        11.54         7.73         3.45        17.52 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        4.31        14.33         8.22         7.46         4.77         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.09         3.65         9.14         2.53        10.78        16.67 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.32        20.94 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03         0.23         9.24         7.69         7.76 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.69         0.07 

      2Q LOSS CNV 2Q LOSS WILD-TYPE 
             3.75              0.07 
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
            53.19            127.56 
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
            13.61              9.44 
[1] "3.8 - 53.2 (13.6)" "0.1 - 127.6 (9.4)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
      "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"       "2Q LOSS CNV" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"2Q LOSS WILD-TYPE"       "2Q LOSS CNV" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS CNV          5    4
  2Q LOSS WILD-TYPE  213  330
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  FEMALE           5               213
  MALE             4               330
D43V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  2Q LOSS CNV                                   0                   0
  2Q LOSS WILD-TYPE                             8                  18
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  2Q LOSS CNV                                     9
  2Q LOSS WILD-TYPE                             517
D43V5, multiclass
                                 clus
vv                                2Q LOSS CNV 2Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       0                18
  UNTREATED PRIMARY (DE NOVO) GBM           9               517
D43V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS CNV          7    2
  2Q LOSS WILD-TYPE  374  169
     clus
vv    2Q LOSS CNV 2Q LOSS WILD-TYPE
  NO            7               374
  YES           2               169

Clustering(44) Variable = 3p loss
D44V1, survival
                   sevent
clus2                 0   1
  3P LOSS CNV         7  15
  3P LOSS WILD-TYPE 126 404
      3P LOSS CNV 3P LOSS WILD-TYPE 
               22               530 
      3P LOSS CNV 3P LOSS WILD-TYPE 
               15               404 
$`3P LOSS CNV`
TCGA-02-0083 TCGA-02-0106 TCGA-02-0330 TCGA-02-0432 TCGA-02-2486 TCGA-06-0152 
       22.72        11.67        15.91        47.11        16.18        11.80 
TCGA-06-0221 TCGA-06-0409 TCGA-06-0878 TCGA-06-5416 TCGA-06-5859 TCGA-08-0246 
       18.02        70.52         7.17         6.71         4.54         3.91 
TCGA-08-0516 TCGA-12-0776 TCGA-12-3653 TCGA-14-0862 TCGA-14-1458 TCGA-14-3477 
       18.44         9.11        11.74         2.89         6.12         3.75 
TCGA-15-1447 TCGA-28-1752 TCGA-32-1991 TCGA-76-4929 
       53.19         8.45        16.93         3.65 

$`3P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.70         3.19        15.06        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       28.70        25.05         5.49        10.19        20.84        27.22 
TCGA-02-0080 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       89.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
        3.48        26.99        65.00        17.65        23.15        92.61 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.95        15.65        48.95        16.54        16.90        17.69 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0332 
       12.23         9.86         7.69        10.62         0.16        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.24        16.18         3.35        16.80        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.29        15.42         2.70         0.26         4.04        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
        0.10         3.55        22.72        32.48        10.52        18.74 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.07        23.05        22.16        10.75         0.20         9.21 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        16.70         9.80 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        7.82        19.46        46.59        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
        5.46         9.44        11.80         2.56        56.84        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.29        19.04         3.12        13.02         0.23         2.20 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        2.73        51.32         1.97        53.98        19.00         2.53 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       40.37        37.02        26.33        28.47        14.93        10.29 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       18.28         4.67         7.04         2.60         0.39         6.44 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        5.46         3.88         4.96        11.84         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 
       22.49         0.33        10.32        11.80        14.96        10.29 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
        5.52         0.26         4.67         8.05         0.16        35.01 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.33         3.22         4.47         9.63         2.04        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        9.37        22.29        19.53         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0879 TCGA-06-0881 
        0.92         9.17         8.91         6.71        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 
        5.42        20.94         7.43         6.35         3.58        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
        8.65         7.86        13.58         4.18         1.08         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.90         9.27         2.83         8.52         5.95         6.81 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        5.98         4.37         0.43         9.37        11.21         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 
        8.35         4.54         8.81         8.98         8.55         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        3.75         6.12         3.91         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        0.49         7.36         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 
        4.77         4.96        22.68        34.75       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        4.34        13.78        10.39         7.59         3.39        53.79 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       19.50         0.95         9.17        10.85        15.72         3.19 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       10.59         0.30         0.56         3.48        11.77         8.52 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       58.19         1.28        10.72         4.80         6.51        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       17.29         5.52        14.01        14.40         1.61        10.39 
TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
        5.95        10.52         7.17        65.88         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        24.13         6.08         2.63        18.08        28.37 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 
       12.43        53.10        43.10         5.49        14.83        14.27 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       91.73        24.76        18.48        10.62        23.51        27.78 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       38.76         8.91        20.58       127.56         5.82         6.21 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
       30.54        21.63        11.97        11.38        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 
       14.53         3.98         3.39         9.44        25.28        13.61 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
        6.38        59.41        43.20        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       11.77        34.52        13.08         3.22         2.01        15.09 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.18        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0865 TCGA-14-0866 
       13.74         3.25         1.35         5.39        16.50        26.33 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
        2.04        28.90        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.02        58.78        23.11         7.10 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1459 TCGA-14-1794 
        1.15        30.15         0.92        40.93        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        1.94        17.75        17.82         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 
       17.49         7.96         3.39         9.86        19.10         5.49 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 
        3.91         9.93        26.07        16.31         4.27        29.00 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        0.82         9.90        13.35         3.65        18.28        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
        6.41        11.77        21.86         8.61         0.43        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 
        3.39        10.75         9.07         5.95        12.95         4.64 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
       25.38         3.48         7.13        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       16.47         7.00         7.04         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.64         4.73         7.96         1.78         6.51         5.39 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
        5.29         5.42        10.03        13.87         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
        7.10         9.37         9.40        14.86         5.49         8.84 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        1.22         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        18.25        33.14        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.72        10.39        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.75         0.20         2.53         9.17 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        8.32         7.59         1.18         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        0.66         6.74         4.77         7.30         5.26         3.91 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
        9.04        15.55         2.53        11.77         9.80        14.20 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
        7.79        13.64         4.21         8.52        10.49         5.42 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
       15.35        21.07         0.49         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-2491 TCGA-32-2494 
        1.18         4.67        12.69        14.83        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       14.99        15.95         7.33         8.84         8.88         7.36 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       13.15         3.68        12.59        11.70        10.85         5.42 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
        6.02         0.20        11.54         7.73         3.45        17.52 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        4.31        14.33         8.22         7.46         4.77         4.54 
TCGA-76-4928 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.09         9.14         2.53        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.32        20.94         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

      3P LOSS CNV 3P LOSS WILD-TYPE 
             2.89              0.07 
      3P LOSS CNV 3P LOSS WILD-TYPE 
            70.52            127.56 
      3P LOSS CNV 3P LOSS WILD-TYPE 
           11.705             9.485 
[1] "2.9 - 70.5 (11.7)" "0.1 - 127.6 (9.5)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"       "3P LOSS CNV" "3P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
      "3P LOSS CNV" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS CNV          9   13
  3P LOSS WILD-TYPE  209  321
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  FEMALE           9               209
  MALE            13               321
D44V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  3P LOSS CNV                                   0                   1
  3P LOSS WILD-TYPE                             8                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  3P LOSS CNV                                    21
  3P LOSS WILD-TYPE                             505
D44V5, multiclass
                                 clus
vv                                3P LOSS CNV 3P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       1                17
  UNTREATED PRIMARY (DE NOVO) GBM          21               505
D44V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS CNV         20    2
  3P LOSS WILD-TYPE  361  169
     clus
vv    3P LOSS CNV 3P LOSS WILD-TYPE
  NO           20               361
  YES           2               169

Clustering(45) Variable = 3q loss
D45V1, survival
                   sevent
clus2                 0   1
  3Q LOSS CNV         3  13
  3Q LOSS WILD-TYPE 130 406
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
               16               536 
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
               13               406 
$`3Q LOSS CNV`
TCGA-02-0330 TCGA-06-0152 TCGA-06-0221 TCGA-06-0409 TCGA-06-5859 TCGA-08-0246 
       15.91        11.80        18.02        70.52         4.54         3.91 
TCGA-08-0516 TCGA-12-0691 TCGA-12-1099 TCGA-12-3653 TCGA-14-0812 TCGA-14-0871 
       18.44         6.08         3.39        11.74         3.25        28.90 
TCGA-14-1458 TCGA-15-1447 TCGA-28-1752 TCGA-76-4929 
        6.12        53.19         8.45         3.65 

$`3Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.70         3.19        15.06        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       28.70        25.05         5.49        10.19        20.84        27.22 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       89.72        22.72         0.23        51.29         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.93         3.48        26.99        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       23.15        92.61        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.90        17.69        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.86         7.69        10.62 
TCGA-02-0326 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
        0.16        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.29        15.42        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        32.48        10.52        18.74        14.07        23.05 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       22.16        10.75         0.20         9.21         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        16.70         9.80         7.82        19.46 
TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       46.59        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         2.56        56.84        10.65         5.29        19.04 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.12        13.02         0.23         2.20         2.73        51.32 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        1.97        53.98        19.00         2.53        40.37        37.02 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       26.33        28.47        14.93        10.29        18.28         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        7.04         2.60         0.39         6.44         5.46         3.88 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        4.96        11.84         0.20        12.43        22.49         0.33 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       10.32        11.80        14.96        10.29         5.52         0.26 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        4.67         8.05         0.16        35.01        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        4.47         9.63         2.04        23.57         9.37        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.53         5.36         2.70         2.14         0.92         9.17 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
        8.91         6.71         7.17        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
       20.94         7.43         6.35         3.58        26.79         8.65 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        7.86        13.58         4.18         1.08         0.76         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        9.27         2.83         8.52         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43         9.37        11.21         3.52         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 
        4.54         8.81         8.98         8.55         6.71         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        3.75         6.12         3.91         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        0.49         7.36         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 
        4.77         4.96        22.68        34.75       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        4.34        13.78        10.39         7.59         3.39        53.79 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       19.50         0.95         9.17        10.85        15.72         3.19 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       10.59         0.30         0.56         3.48        11.77         8.52 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       58.19         1.28        10.72         4.80         6.51        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       17.29         5.52        14.01        14.40         1.61        10.39 
TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
        5.95        10.52         7.17        65.88         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       25.97        24.13         2.63        18.08        28.37        12.43 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       53.10        43.10         5.49         9.11        14.83        14.27 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       91.73        24.76        18.48        10.62        23.51        27.78 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       38.76         8.91        20.58       127.56         5.82         6.21 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
       30.54        21.63        11.97        11.38        15.85         9.11 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
       14.53         3.98         9.44        25.28        13.61         6.38 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.41        43.20        25.78        11.54        10.95        11.77 
TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       34.52        13.08         3.22         2.01        15.09        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.18        23.05         2.24        11.24        13.74 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 
        1.35         5.39         2.89        16.50        26.33         2.04 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.02        58.78        23.11         7.10         1.15        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
        0.92        40.93        12.43         0.99         1.94        17.75 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.82         7.63         5.88         7.13        17.49         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 
        3.75         3.39         9.86        19.10         5.49         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        9.93        26.07        16.31         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
       10.75         9.07         5.95        12.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.48         7.13        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        16.47 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73         7.96         1.78         6.51         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
        5.42        10.03        13.87         9.73        31.33         7.10 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        9.37         9.40        14.86         5.49         8.84         1.22 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.30         4.80        16.57         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       18.25        33.14        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       24.72        10.39        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.75         0.20         2.53         9.17         8.32 
TCGA-28-1751 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        7.59         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        6.74         4.77         7.30         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.55         2.53        11.77         9.80        14.20         7.79 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         4.21         8.52        10.49         5.42        15.35 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.83        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       14.99        15.95         7.33         8.84         8.88         7.36 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       13.15         3.68        12.59        11.70        10.85         5.42 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
        6.02         0.20        11.54         7.73         3.45        17.52 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        4.31        14.33         8.22         7.46         4.77         4.54 
TCGA-76-4928 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.09         9.14         2.53        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.32        20.94         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

      3Q LOSS CNV 3Q LOSS WILD-TYPE 
             3.25              0.07 
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
            70.52            127.56 
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
           10.095             9.550 
[1] "3.2 - 70.5 (10.1)" "0.1 - 127.6 (9.6)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"3Q LOSS WILD-TYPE"       "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
      "3Q LOSS CNV" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS CNV          8    8
  3Q LOSS WILD-TYPE  210  326
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  FEMALE           8               210
  MALE             8               326
D45V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  3Q LOSS CNV                                   0                   0
  3Q LOSS WILD-TYPE                             8                  18
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  3Q LOSS CNV                                    16
  3Q LOSS WILD-TYPE                             510
D45V5, multiclass
                                 clus
vv                                3Q LOSS CNV 3Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       0                18
  UNTREATED PRIMARY (DE NOVO) GBM          16               510
D45V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS CNV         13    3
  3Q LOSS WILD-TYPE  368  168
     clus
vv    3Q LOSS CNV 3Q LOSS WILD-TYPE
  NO           13               368
  YES           3               168

Clustering(46) Variable = 4p loss
D46V1, survival
                   sevent
clus2                 0   1
  4P LOSS CNV         2  23
  4P LOSS WILD-TYPE 131 396
      4P LOSS CNV 4P LOSS WILD-TYPE 
               25               527 
      4P LOSS CNV 4P LOSS WILD-TYPE 
               23               396 
$`4P LOSS CNV`
TCGA-02-0014 TCGA-02-0026 TCGA-02-0079 TCGA-02-2485 TCGA-06-0152 TCGA-06-0414 
       82.55        24.59        27.22        15.42        11.80        35.01 
TCGA-06-1087 TCGA-06-1800 TCGA-06-6693 TCGA-08-0351 TCGA-08-0386 TCGA-08-0525 
        3.58        26.79         0.49        53.79        15.72        15.98 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3653 TCGA-14-0867 TCGA-14-1454 TCGA-14-1458 
       59.41        43.20        11.74         2.04        30.15         6.12 
TCGA-16-0848 TCGA-16-0849 TCGA-27-1837 TCGA-32-1973 TCGA-32-1978 TCGA-76-4925 
        9.93        26.07        14.04        21.07        15.85         4.77 
TCGA-76-4928 
        3.09 

$`4P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       20.71        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       42.74        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
       15.06        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        9.57         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
        5.49        10.19        20.84        89.72        22.72         0.23 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.29         8.81        57.76        16.93         3.48        26.99 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 
       65.00        11.67        17.65        23.15        92.61        99.95 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.90        17.69        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.86         7.69        10.62         0.16        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.24        16.18         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       12.92        15.29        16.18         2.70         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.31         0.10         3.55        22.72        32.48        10.52 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       18.74        14.07        23.05        22.16        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
        9.21         2.20        11.74         2.33        20.09        16.70 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 
        9.80         7.82        19.46        46.59        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19         5.46         9.44        11.80         2.56        56.84 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.29        19.04         3.12        13.02         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        2.20         2.73        51.32         1.97        53.98        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        2.53        40.37        37.02        26.33        28.47        14.93 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.29        18.28         4.67         7.04         2.60         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        6.44         5.46         3.88         4.96        11.84         0.20 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
       12.43        22.49         0.33        18.02        10.32        11.80 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       14.96        10.29         5.52         0.26        70.52         4.67 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        8.05         0.16        12.33         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.04        23.57         9.37        22.29        19.53         5.36 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.14         0.92         9.17         8.91         6.71 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        22.98         5.85         5.42        20.94         7.43 
TCGA-06-1086 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
        6.35         8.65         7.86        13.58         4.18         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        0.76         4.90         9.27         2.83         8.52         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        6.81         5.98         4.37         0.43         9.37        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.52         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.12         4.54         3.91 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        7.76         5.36         1.45         7.36         8.28        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 
        4.77         1.55         4.77         4.96        22.68        34.75 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
        3.91       108.82         1.74         4.34        13.78        10.39 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
        7.59         3.39         1.28         6.41        15.06        22.52 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       14.70        35.64        19.50         0.95         9.17        10.85 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 
        3.19        10.59         0.30         0.56         3.48        11.77 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
        8.52        18.44        58.19         1.28        10.72         4.80 
TCGA-08-0524 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
        6.51        17.29         5.52        14.01        14.40         1.61 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       10.39         5.95        10.52         7.17        65.88         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        24.13         6.08         2.63        18.08 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.37        12.43        53.10        43.10         5.49         9.11 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.83        14.27        91.73        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.91        20.58       127.56 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         6.21        30.54        21.63        11.97        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       15.85         9.11        14.53         3.98         3.39         9.44 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
       25.28        13.61         6.38        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       11.77        34.52        13.08         3.22         2.01        15.09 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.18        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 
       13.74         3.25         1.35         5.39         2.89        16.50 
TCGA-14-0866 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
       26.33        28.90        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.02        58.78        23.11         7.10 
TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        1.15         0.92        40.93        12.43         0.99         1.94 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.75        17.82         7.63         5.88         7.13        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 
        7.96         3.75         3.39         9.86        19.10        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        5.49         3.91        16.31         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
       10.75         9.07         5.95        12.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.48         7.13        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        16.47 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73         7.96         1.78         6.51         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
        5.42        10.03        13.87         9.73        31.33         7.10 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        9.37         9.40        14.86         5.49         8.84         1.22 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.30         4.80        16.57         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1838 TCGA-27-2518 
       18.25        33.14        21.30        30.05        11.51        24.72 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       10.39        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.75         0.20         2.53         9.17         8.32         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.45         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        6.74         4.77         7.30         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.55         2.53        11.77         9.80        14.20         7.79 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         4.21         8.52        10.49         5.42        15.35 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.49         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.83        16.93        12.23        20.78        14.99        15.95 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
        7.33         8.84         8.88         7.36        13.15         3.68 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        11.70        10.85         5.42         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44         6.02         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        17.52         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        8.22         7.46         4.54         3.65         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

      4P LOSS CNV 4P LOSS WILD-TYPE 
             0.49              0.07 
      4P LOSS CNV 4P LOSS WILD-TYPE 
            82.55            127.56 
      4P LOSS CNV 4P LOSS WILD-TYPE 
            15.85              9.37 
[1] "0.5 - 82.5 (15.8)" "0.1 - 127.6 (9.4)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"4P LOSS WILD-TYPE"       "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
      "4P LOSS CNV"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
      "4P LOSS CNV" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"4P LOSS WILD-TYPE"       "4P LOSS CNV" "4P LOSS WILD-TYPE"       "4P LOSS CNV" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS CNV          6   19
  4P LOSS WILD-TYPE  212  315
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  FEMALE           6               212
  MALE            19               315
D46V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  4P LOSS CNV                                   0                   0
  4P LOSS WILD-TYPE                             8                  18
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  4P LOSS CNV                                    25
  4P LOSS WILD-TYPE                             501
D46V5, multiclass
                                 clus
vv                                4P LOSS CNV 4P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       0                18
  UNTREATED PRIMARY (DE NOVO) GBM          25               501
D46V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS CNV         21    4
  4P LOSS WILD-TYPE  360  167
     clus
vv    4P LOSS CNV 4P LOSS WILD-TYPE
  NO           21               360
  YES           4               167

Clustering(47) Variable = 4q loss
D47V1, survival
                   sevent
clus2                 0   1
  4Q LOSS CNV         3  21
  4Q LOSS WILD-TYPE 130 398
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
               24               528 
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
               21               398 
$`4Q LOSS CNV`
TCGA-02-0024 TCGA-02-0026 TCGA-02-0079 TCGA-02-2485 TCGA-06-0152 TCGA-06-0414 
       53.06        24.59        27.22        15.42        11.80        35.01 
TCGA-06-1087 TCGA-06-1800 TCGA-06-2569 TCGA-06-6693 TCGA-08-0386 TCGA-12-3644 
        3.58        26.79         0.43         0.49        15.72        59.41 
TCGA-12-3646 TCGA-12-3653 TCGA-14-0740 TCGA-14-0867 TCGA-14-1453 TCGA-14-1454 
       43.20        11.74        11.97         2.04         1.15        30.15 
TCGA-14-1458 TCGA-15-1447 TCGA-16-0848 TCGA-19-2629 TCGA-32-1973 TCGA-76-6285 
        6.12        53.19         9.93        16.47        21.07         8.32 

$`4Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       42.74        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
       15.06        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        9.57         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
        5.49        10.19        20.84        89.72        22.72         0.23 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.29         8.81        57.76        16.93         3.48        26.99 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 
       65.00        11.67        17.65        23.15        92.61        99.95 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.90        17.69        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.86         7.69        10.62         0.16        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.24        16.18         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       12.92        15.29        16.18         2.70         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.31         0.10         3.55        22.72        32.48        10.52 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       18.74        14.07        23.05        22.16        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
        9.21         2.20        11.74         2.33        20.09        16.70 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 
        9.80         7.82        19.46        46.59        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19         5.46         9.44        11.80         2.56        56.84 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.29        19.04         3.12        13.02         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        2.20         2.73        51.32         1.97        53.98        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        2.53        40.37        37.02        26.33        28.47        14.93 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.29        18.28         4.67         7.04         2.60         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        6.44         5.46         3.88         4.96        11.84         0.20 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
       12.43        22.49         0.33        18.02        10.32        11.80 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       14.96        10.29         5.52         0.26        70.52         4.67 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        8.05         0.16        12.33         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.04        23.57         9.37        22.29        19.53         5.36 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.14         0.92         9.17         8.91         6.71 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        22.98         5.85         5.42        20.94         7.43 
TCGA-06-1086 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
        6.35         8.65         7.86        13.58         4.18         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        0.76         4.90         9.27         2.83         8.52         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        6.81         5.98         4.37         9.37        11.21         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.12         4.54         3.91         7.76 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        5.36         1.45         7.36         8.28        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 
        1.55         4.77         4.96        22.68        34.75         3.91 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      108.82         1.74         4.34        13.78        10.39         7.59 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
        3.39        53.79         1.28         6.41        15.06        22.52 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       14.70        35.64        19.50         0.95         9.17        10.85 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 
        3.19        10.59         0.30         0.56         3.48        11.77 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
        8.52        18.44        58.19         1.28        10.72         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 
        6.51        15.98        17.29         5.52        14.01        14.40 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 
        1.61        10.39         5.95        10.52         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        24.13         6.08         2.63 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       18.08        28.37        12.43        53.10        43.10         5.49 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        9.11        14.83        14.27        91.73        24.76        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       10.62        23.51        27.78        38.76         8.91        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
      127.56         5.82         6.21        30.54        21.63        11.97 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
       11.38        15.85         9.11        14.53         3.98         3.39 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3648 TCGA-12-3649 
        9.44        25.28        13.61         6.38        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        11.77        34.52        13.08         3.22         2.01 
TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       15.09         0.95         6.18        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 
       13.74         3.25         1.35         5.39         2.89        16.50 
TCGA-14-0866 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
       26.33        28.90        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.02        58.78        23.11         7.10 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
        0.92        40.93        12.43         0.99         1.94        17.75 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.82         7.63         5.88         7.13        17.49         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 
        3.75         3.39         9.86        19.10         5.49         3.91 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
       26.07        16.31         4.27        29.00         0.82         9.90 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       13.35         3.65        18.28        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       21.86         8.61         0.43        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 
        9.07         5.95        12.95         4.64        25.38         3.48 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        7.13        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 
        1.08         7.53         0.16         4.08         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        11.28         8.02        18.64         4.73         7.96 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 
        1.78         6.51         5.39         5.29         5.42        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       13.87         9.73        31.33         7.10         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.18         1.51         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77         9.80        14.20         7.79        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1976 
        4.21         8.52        10.49         5.42        15.35         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.83        16.93        12.23        20.78        14.99        15.95 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
        7.33         8.84         8.88         7.36        13.15         3.68 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        11.70        10.85         5.42         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44         6.02         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        17.52         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.46         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       11.38        17.06        20.94         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.24         7.69         7.76         1.61        17.69         0.07 

      4Q LOSS CNV 4Q LOSS WILD-TYPE 
             0.43              0.07 
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
            59.41            127.56 
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
            15.57              9.37 
[1] "0.4 - 59.4 (15.6)" "0.1 - 127.6 (9.4)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV"       "4Q LOSS CNV" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
      "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"       "4Q LOSS CNV" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"4Q LOSS WILD-TYPE"       "4Q LOSS CNV" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS CNV          8   16
  4Q LOSS WILD-TYPE  210  318
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  FEMALE           8               210
  MALE            16               318
D47V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  4Q LOSS CNV                                   0                   1
  4Q LOSS WILD-TYPE                             8                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  4Q LOSS CNV                                    23
  4Q LOSS WILD-TYPE                             503
D47V5, multiclass
                                 clus
vv                                4Q LOSS CNV 4Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       1                17
  UNTREATED PRIMARY (DE NOVO) GBM          23               503
D47V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS CNV         18    6
  4Q LOSS WILD-TYPE  363  165
     clus
vv    4Q LOSS CNV 4Q LOSS WILD-TYPE
  NO           18               363
  YES           6               165

Clustering(48) Variable = 5p loss
D48V1, survival
                   sevent
clus2                 0   1
  5P LOSS CNV         4  17
  5P LOSS WILD-TYPE 129 402
      5P LOSS CNV 5P LOSS WILD-TYPE 
               21               531 
      5P LOSS CNV 5P LOSS WILD-TYPE 
               17               402 
$`5P LOSS CNV`
TCGA-02-0025 TCGA-02-0069 TCGA-02-0115 TCGA-02-0339 TCGA-02-2483 TCGA-06-0414 
       42.74        28.70        15.65        12.39        15.29        35.01 
TCGA-08-0245 TCGA-08-0386 TCGA-08-0516 TCGA-08-0517 TCGA-12-3652 TCGA-12-3653 
       34.75        15.72        18.44        58.19        34.52        11.74 
TCGA-14-0740 TCGA-14-0865 TCGA-14-0871 TCGA-16-0850 TCGA-19-5954 TCGA-26-5133 
       11.97        16.50        28.90        16.31         7.96        14.86 
TCGA-27-1834 TCGA-28-1755 TCGA-76-4929 
       33.14         1.51         3.65 

$`5P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       53.06        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 
        8.35         9.57         6.02        19.73        26.43        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
        5.49        10.19        20.84        27.22        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
        0.23        51.29         8.81        57.76        16.93         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
       26.99        65.00        11.67        17.65        23.15        92.61 
TCGA-02-0114 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       99.95        48.95        16.54        16.90        17.69        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.86         7.69        10.62         0.16        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
        4.37        25.12        10.59        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.24        16.18         3.35        16.80        12.92 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.42        16.18         2.70         0.26         4.04        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
        0.10         3.55        22.72        32.48        10.52        18.74 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.07        23.05        22.16        10.75         0.20         9.21 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        16.70         9.80 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        7.82        19.46        46.59        11.80        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19         5.46         9.44        11.80         2.56        56.84 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.29        19.04         3.12        13.02         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        2.20         2.73        51.32         1.97        53.98        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        2.53        40.37        37.02        26.33        28.47        14.93 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.29        18.28         4.67         7.04         2.60         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        6.44         5.46         3.88         4.96        11.84         0.20 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
       12.43        22.49         0.33        18.02        10.32        11.80 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       14.96        10.29         5.52         0.26        70.52         4.67 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        8.05         0.16        12.33         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.04        23.57         9.37        22.29        19.53         5.36 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.14         0.92         9.17         8.91         6.71 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        22.98         5.85         5.42        20.94         7.43 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        6.35         3.58        26.79         8.65         7.86        13.58 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
        4.18         1.08         0.76         4.90         9.27         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
        8.52         5.95         6.81         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        9.37        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         6.71         2.73         3.75         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
        4.96        22.68         3.91       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        6.41        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        0.95         9.17        10.85         3.19        10.59         0.30 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0518 TCGA-08-0520 
        0.56         3.48        11.77         8.52         1.28        10.72 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         6.51        15.98        17.29         5.52        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 
       14.40         1.61        10.39         5.95        10.52         7.17 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       65.88         0.10        38.17        25.97        24.13         6.08 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        2.63        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        5.49         9.11        14.83        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 
       18.48        10.62        23.51        27.78        38.76         8.91 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.56         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       11.97        11.38        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
        3.39         9.44        25.28        13.61         6.38        59.41 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-5295 
       43.20        25.78        11.54        10.95        11.77        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        3.22         2.01        15.09         0.95         6.18        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
        2.24        11.24        13.74         3.25         1.35         5.39 
TCGA-14-0862 TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
        2.89        26.33         2.04        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
       12.43         0.99         1.94        17.75        17.82         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 
        5.88         7.13        17.49         7.96         3.75         3.39 
TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 
        9.86        19.10        53.19         5.49         3.91         9.93 
TCGA-16-0849 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       26.07         4.27        29.00         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        3.65        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.43        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 
        5.95        12.95         4.64        25.38         3.48         7.13 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
        7.53         0.16         4.08        16.47         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5955 
        6.64        11.28         8.02        18.64         4.73         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        6.51         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5134 
        9.73        31.33         7.10         9.37         9.40         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.84         1.22         1.58         7.92         2.30         4.80 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
       16.57         9.86        18.25        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.72        10.39        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.75         0.20         2.53         9.17 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1756 TCGA-28-1757 
        8.32         7.59         8.45         1.18         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        0.66         6.74         4.77         7.30         5.26         3.91 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
        9.04        15.55         2.53        11.77         9.80        14.20 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
        7.79        13.64         4.21         8.52        10.49         5.42 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
       15.35        21.07         0.49         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        1.18         4.67        12.69        14.83        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 
       20.78        14.99        15.95         7.33         8.84         8.88 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
        7.36        13.15         3.68        12.59        11.70        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
        5.42         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44         6.02         0.20        11.54         7.73         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
       17.52         4.31        14.33         8.22         7.46         4.77 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        4.54         3.09         9.14         2.53        10.78        16.67 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.32        20.94 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03         0.23         9.24         7.69         7.76 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.69         0.07 

      5P LOSS CNV 5P LOSS WILD-TYPE 
             1.51              0.07 
      5P LOSS CNV 5P LOSS WILD-TYPE 
            58.19            127.56 
      5P LOSS CNV 5P LOSS WILD-TYPE 
            16.31              9.27 
[1] "1.5 - 58.2 (16.3)" "0.1 - 127.6 (9.3)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "5P LOSS CNV"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "5P LOSS CNV"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "5P LOSS CNV"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" "5P LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"       "5P LOSS CNV" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
      "5P LOSS CNV" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS CNV          9   12
  5P LOSS WILD-TYPE  209  322
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  FEMALE           9               209
  MALE            12               322
D48V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  5P LOSS CNV                                   0                   1
  5P LOSS WILD-TYPE                             8                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  5P LOSS CNV                                    20
  5P LOSS WILD-TYPE                             506
D48V5, multiclass
                                 clus
vv                                5P LOSS CNV 5P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       1                17
  UNTREATED PRIMARY (DE NOVO) GBM          20               506
D48V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS CNV         19    2
  5P LOSS WILD-TYPE  362  169
     clus
vv    5P LOSS CNV 5P LOSS WILD-TYPE
  NO           19               362
  YES           2               169

Clustering(49) Variable = 5q loss
D49V1, survival
                   sevent
clus2                 0   1
  5Q LOSS CNV         6  14
  5Q LOSS WILD-TYPE 127 405
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
               20               532 
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
               14               405 
$`5Q LOSS CNV`
TCGA-02-0011 TCGA-02-0025 TCGA-02-0051 TCGA-02-0069 TCGA-02-2483 TCGA-06-0414 
       20.71        42.74        15.06        28.70        15.29        35.01 
TCGA-06-2569 TCGA-08-0386 TCGA-08-0516 TCGA-12-3652 TCGA-12-3653 TCGA-14-0740 
        0.43        15.72        18.44        34.52        11.74        11.97 
TCGA-14-0865 TCGA-14-0871 TCGA-16-0850 TCGA-19-0960 TCGA-19-5954 TCGA-26-5133 
       16.50        28.90        16.31         8.61         7.96        14.86 
TCGA-27-1834 TCGA-76-4929 
       33.14         3.65 

$`5Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       12.59         6.54         2.50        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 
        6.02        19.73        26.43        25.05         5.49        10.19 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       20.84        27.22        89.72        22.72         0.23        51.29 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
        8.81        57.76        16.93         3.48        26.99        65.00 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 
       11.67        17.65        23.15        92.61        99.95        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 
       48.95        16.54        16.90        17.69        10.75        14.47 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
        3.98        13.87        14.20        15.95        12.23         9.86 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        7.69        10.62         0.16        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.24        16.18         3.35        16.80        12.92 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.42        16.18         2.70         0.26         4.04        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
        0.10         3.55        22.72        32.48        10.52        18.74 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.07        23.05        22.16        10.75         0.20         9.21 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        16.70         9.80 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        7.82        19.46        46.59        11.80        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19         5.46         9.44        11.80         2.56        56.84 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.29        19.04         3.12        13.02         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        2.20         2.73        51.32         1.97        53.98        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        2.53        40.37        37.02        26.33        28.47        14.93 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.29        18.28         4.67         7.04         2.60         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        6.44         5.46         3.88         4.96        11.84         0.20 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
       12.43        22.49         0.33        18.02        10.32        11.80 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       14.96        10.29         5.52         0.26        70.52         4.67 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        8.05         0.16        12.33         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.04        23.57         9.37        22.29        19.53         5.36 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.14         0.92         9.17         8.91         6.71 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        22.98         5.85         5.42        20.94         7.43 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        6.35         3.58        26.79         8.65         7.86        13.58 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
        4.18         1.08         0.76         4.90         9.27         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2570 
        8.52         5.95         6.81         5.98         4.37         9.37 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.21         3.52         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         6.71         2.73         3.75         6.12         4.54 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        3.91         7.76         5.36         1.45         0.49         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.28        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
       22.68        34.75         3.91       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        6.41        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        0.95         9.17        10.85         3.19        10.59         0.30 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 
        0.56         3.48        11.77         8.52        58.19         1.28 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.72         4.80         6.51        15.98        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 
       14.01        14.40         1.61        10.39         5.95        10.52 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.10         5.49         9.11        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.76        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.91        20.58       127.56         5.82         6.21        30.54 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.63        11.97        11.38        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
        3.98         3.39         9.44        25.28        13.61         6.38 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.41        43.20        25.78        11.54        10.95        11.77 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 
       13.08         3.22         2.01        15.09         0.95         6.18 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.74         3.25         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 
        5.39         2.89        26.33         2.04        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.02        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       23.11         7.10         1.15        30.15         0.92        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 
        6.12        12.43         0.99         1.94        17.75        17.82 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.13        17.49         7.96         3.75 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
        3.39         9.86        19.10        53.19         5.49         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
        9.93        26.07         4.27        29.00         0.82         9.90 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       13.35         3.65        18.28        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
       21.86         0.43        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 
        5.95        12.95         4.64        25.38         3.48         7.13 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
        7.53         0.16         4.08        16.47         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5955 
        6.64        11.28         8.02        18.64         4.73         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        6.51         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5134 
        9.73        31.33         7.10         9.37         9.40         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.84         1.22         1.58         7.92         2.30         4.80 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
       16.57         9.86        18.25        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.72        10.39        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.75         0.20         2.53         9.17 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
        8.32         7.59         8.45         1.18         1.51         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        0.13         0.66         6.74         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        3.91         9.04        15.55         2.53        11.77         9.80 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       14.20         7.79        13.64         4.21         8.52        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        5.42        15.35        21.07         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.83        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 
       12.23        20.78        14.99        15.95         7.33         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
        8.88         7.36        13.15         3.68        12.59        11.70 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85         5.42         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44         6.02         0.20        11.54         7.73 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        17.52         4.31        14.33         8.22         7.46 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 
        4.77         4.54         3.09         9.14         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       16.67         3.29         2.70        11.38        17.06         8.32 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.94         4.83         5.03         0.23         9.24         7.69 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.76         1.61        17.69         0.07 

      5Q LOSS CNV 5Q LOSS WILD-TYPE 
             0.43              0.07 
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
            42.74            127.56 
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
           16.015             9.370 
[1] "0.4 - 42.7 (16.0)" "0.1 - 127.6 (9.4)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" "5Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"       "5Q LOSS CNV" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
      "5Q LOSS CNV" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS CNV          9   11
  5Q LOSS WILD-TYPE  209  323
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  FEMALE           9               209
  MALE            11               323
D49V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  5Q LOSS CNV                                   0                   0
  5Q LOSS WILD-TYPE                             8                  18
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  5Q LOSS CNV                                    20
  5Q LOSS WILD-TYPE                             506
D49V5, multiclass
                                 clus
vv                                5Q LOSS CNV 5Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       0                18
  UNTREATED PRIMARY (DE NOVO) GBM          20               506
D49V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS CNV         17    3
  5Q LOSS WILD-TYPE  364  168
     clus
vv    5Q LOSS CNV 5Q LOSS WILD-TYPE
  NO           17               364
  YES           3               168

Clustering(50) Variable = 6p loss
D50V1, survival
                   sevent
clus2                 0   1
  6P LOSS CNV         7  40
  6P LOSS WILD-TYPE 126 379
      6P LOSS CNV 6P LOSS WILD-TYPE 
               47               505 
      6P LOSS CNV 6P LOSS WILD-TYPE 
               40               379 
$`6P LOSS CNV`
TCGA-02-0023 TCGA-02-0026 TCGA-02-0039 TCGA-02-0048 TCGA-02-0086 TCGA-02-0106 
       20.12        24.59        10.52         3.19         8.81        11.67 
TCGA-02-0317 TCGA-02-0324 TCGA-02-0325 TCGA-06-0129 TCGA-06-0138 TCGA-06-0162 
       12.23         7.69        10.62        32.48        22.16         2.56 
TCGA-06-0166 TCGA-06-0184 TCGA-06-0216 TCGA-06-2561 TCGA-06-5416 TCGA-06-5856 
        5.29        40.37        22.49         9.27         6.71         3.75 
TCGA-06-6390 TCGA-06-6694 TCGA-08-0246 TCGA-08-0353 TCGA-08-0512 TCGA-12-0691 
        5.36         7.36         3.91         6.41        11.77         6.08 
TCGA-12-1098 TCGA-12-3653 TCGA-14-0736 TCGA-14-0817 TCGA-14-0865 TCGA-14-1453 
        3.98        11.74        15.09         5.39        16.50         1.15 
TCGA-19-1392 TCGA-19-2629 TCGA-19-5947 TCGA-19-5960 TCGA-26-1439 TCGA-27-1832 
        3.48        16.47         6.64         5.42        13.87         9.86 
TCGA-27-2524 TCGA-28-1750 TCGA-28-2509 TCGA-28-5220 TCGA-32-1976 TCGA-32-2615 
        7.59         8.32         4.77        10.49         0.49        15.95 
TCGA-32-4210 TCGA-32-4719 TCGA-41-4097 TCGA-74-6573 TCGA-76-4931 
        3.68        10.85         0.20         3.45         9.14 

$`6P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0024 
       20.71        82.55        20.61        55.86        77.62        53.06 
TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       42.74        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0051 TCGA-02-0052 
       10.72        18.28         6.84        14.70        15.06        12.59 
TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
        6.54         2.50        19.86         8.35         9.57         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 
       19.73        26.43        28.70        25.05         5.49        10.19 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       20.84        27.22        89.72        22.72         0.23        51.29 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 
       57.76        16.93         3.48        26.99        65.00        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       23.15        92.61        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.90        17.69        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0321 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
       14.20        15.95         9.86         0.16        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.24        16.18         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.29        15.42        16.18         2.70         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0130 
        4.04        47.31         0.10         3.55        22.72        10.52 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       18.74        14.07        23.05        10.75         0.20         9.21 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        16.70         9.80 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        7.82        19.46        46.59        11.80        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0164 TCGA-06-0165 
        3.19         5.46         9.44        11.80        56.84        10.65 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.04         3.12        13.02         0.23         2.20         2.73 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 
       51.32         1.97        53.98        19.00         2.53        37.02 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       26.33        28.47        14.93        10.29        18.28         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        7.04         2.60         0.39         6.44         5.46         3.88 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 
        4.96        11.84         0.20        12.43         0.33        18.02 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       10.32        11.80        14.96        10.29         5.52         0.26 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
       70.52         4.67         8.05         0.16        35.01        12.33 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        3.22         4.47         9.63         2.04        23.57         9.37 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       22.29        19.53         5.36         2.70         2.14         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        9.17         8.91         6.71         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 
        5.42        20.94         7.43         6.35         3.58        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
        8.65         7.86        13.58         4.18         1.08         0.76 
TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        4.90         2.83         8.52         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43         9.37        11.21         3.52         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5858 
        4.54         8.81         8.98         8.55         2.73         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6391 TCGA-06-6693 TCGA-06-6695 
        4.54         3.91         7.76         1.45         0.49         8.28 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 
       12.85         4.77         1.55         4.77         4.96        22.68 
TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
       34.75       108.82         1.74         4.34        13.78        10.39 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0354 TCGA-08-0355 
        7.59         3.39        53.79         1.28        15.06        22.52 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       14.70        35.64        19.50         0.95         9.17        10.85 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       15.72         3.19        10.59         0.30         0.56         3.48 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
        8.52        18.44        58.19         1.28        10.72         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 
        6.51        15.98        17.29         5.52        14.01        14.40 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 
        1.61        10.39         5.95        10.52         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 
        0.10        38.17        25.97        24.13         2.63        18.08 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.37        12.43        53.10        43.10         5.49         9.11 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.83        14.27        91.73        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.91        20.58       127.56 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         6.21        30.54        21.63        11.97        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 
       15.85         9.11        14.53         3.39         9.44        25.28 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       13.61         6.38        59.41        43.20        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        11.77        34.52        13.08         3.22         2.01 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.18        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 TCGA-14-0866 TCGA-14-0867 
       13.74         3.25         1.35         2.89        26.33         2.04 
TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
       28.90        15.95        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 
        3.75        32.02        58.78        23.11         7.10        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.93         6.12        12.43         0.99         1.94 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.75        17.82         7.63         5.88         7.13        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 
        7.96         3.75         3.39         9.86        19.10        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 
        5.49         3.91         9.93        26.07        16.31         4.27 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.00         0.82         9.90        13.35         3.65        18.28 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 
       13.97         6.41        11.77        21.86         8.61         0.43 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 
       14.27         3.39        10.75         9.07         5.95        12.95 
TCGA-19-1389 TCGA-19-1390 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
        4.64        25.38         7.13        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.00         7.04        11.28         8.02        18.64         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-26-1438 
        7.96         1.78         6.51         5.39         5.29        10.03 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
        9.73        31.33         7.10         9.37         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.84         1.22         1.58         7.92         2.30 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
        4.80        16.57        18.25        33.14        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.72        10.39        10.39        16.08 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.75         0.20         2.53         9.17 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.59         8.45         1.18         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         6.74         7.30         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.55         2.53        11.77         9.80        14.20         7.79 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
       13.64         4.21         8.52         5.42        15.35        21.07 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 
       14.83        16.93        12.23        20.78        14.99         7.33 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 
        8.84         8.88         7.36        13.15        12.59        11.70 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
        5.42         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-74-6575 TCGA-74-6577 
        4.44         6.02        11.54         7.73        17.52         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.46         4.77         4.54         3.09 
TCGA-76-4929 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        3.65         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.32        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

      6P LOSS CNV 6P LOSS WILD-TYPE 
             0.20              0.07 
      6P LOSS CNV 6P LOSS WILD-TYPE 
            40.37            127.56 
      6P LOSS CNV 6P LOSS WILD-TYPE 
             8.32              9.73 
[1] "0.2 - 40.4 (8.3)"  "0.1 - 127.6 (9.7)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV"       "6P LOSS CNV" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
      "6P LOSS CNV" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
      "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"       "6P LOSS CNV" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"6P LOSS WILD-TYPE"       "6P LOSS CNV" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS CNV         19   28
  6P LOSS WILD-TYPE  199  306
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  FEMALE          19               199
  MALE            28               306
D50V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  6P LOSS CNV                                   0                   0
  6P LOSS WILD-TYPE                             8                  18
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  6P LOSS CNV                                    47
  6P LOSS WILD-TYPE                             479
D50V5, multiclass
                                 clus
vv                                6P LOSS CNV 6P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       0                18
  UNTREATED PRIMARY (DE NOVO) GBM          47               479
D50V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS CNV         32   15
  6P LOSS WILD-TYPE  349  156
     clus
vv    6P LOSS CNV 6P LOSS WILD-TYPE
  NO           32               349
  YES          15               156

Clustering(51) Variable = 6q loss
D51V1, survival
                   sevent
clus2                 0   1
  6Q LOSS CNV        15  64
  6Q LOSS WILD-TYPE 118 355
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
               79               473 
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
               64               355 
$`6Q LOSS CNV`
TCGA-02-0007 TCGA-02-0023 TCGA-02-0039 TCGA-02-0048 TCGA-02-0086 TCGA-02-0106 
       23.18        20.12        10.52         3.19         8.81        11.67 
TCGA-02-0258 TCGA-02-0317 TCGA-02-0324 TCGA-02-0325 TCGA-02-0330 TCGA-02-0422 
       16.54        12.23         7.69        10.62        15.91        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-06-0129 TCGA-06-0138 TCGA-06-0162 TCGA-06-0166 
       10.55        47.11        32.48        22.16         2.56         5.29 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0214 TCGA-06-0216 TCGA-06-0750 
       40.37        37.02        26.33        12.43        22.49         0.92 
TCGA-06-2561 TCGA-06-5408 TCGA-06-5413 TCGA-06-5416 TCGA-06-5856 TCGA-06-6390 
        9.27        11.21         8.81         6.71         3.75         5.36 
TCGA-06-6694 TCGA-08-0246 TCGA-08-0353 TCGA-08-0358 TCGA-08-0512 TCGA-08-0517 
        7.36         3.91         6.41        19.50        11.77        58.19 
TCGA-08-0525 TCGA-12-0615 TCGA-12-0654 TCGA-12-0656 TCGA-12-0691 TCGA-12-1095 
       15.98        14.01         7.17        65.88         6.08        15.85 
TCGA-12-3653 TCGA-12-5299 TCGA-14-0736 TCGA-14-0817 TCGA-14-0865 TCGA-14-1037 
       11.74         3.22        15.09         5.39        16.50        19.30 
TCGA-14-1453 TCGA-14-4157 TCGA-15-0742 TCGA-16-0861 TCGA-16-1045 TCGA-16-1063 
        1.15         3.39         9.86         4.27        29.00        13.97 
TCGA-19-1392 TCGA-19-2629 TCGA-19-5947 TCGA-19-5952 TCGA-19-5960 TCGA-26-1439 
        3.48        16.47         6.64        18.64         5.42        13.87 
TCGA-26-1443 TCGA-27-1832 TCGA-27-2524 TCGA-28-1750 TCGA-28-2509 TCGA-28-5204 
        7.10         9.86         7.59         8.32         4.77         3.91 
TCGA-28-5209 TCGA-28-5213 TCGA-28-5220 TCGA-32-1976 TCGA-32-2615 TCGA-32-4208 
        2.53         9.80        10.49         0.49        15.95        13.15 
TCGA-32-4210 TCGA-32-4719 TCGA-41-3392 TCGA-41-4097 TCGA-74-6573 TCGA-76-4931 
        3.68        10.85         0.99         0.20         3.45         9.14 
TCGA-76-6285 
        8.32 

$`6Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        9.14         4.73        18.35        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0024 TCGA-02-0025 
       82.55        20.61        55.86        77.62        53.06        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0051 TCGA-02-0052 
       10.72        18.28         6.84        14.70        15.06        12.59 
TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
        6.54         2.50        19.86         8.35         9.57         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 
       19.73        26.43        28.70        25.05         5.49        10.19 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       20.84        27.22        89.72        22.72         0.23        51.29 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 
       57.76        16.93         3.48        26.99        65.00        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 
       23.15        92.61        99.95        15.65        48.95        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0321 TCGA-02-0326 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       15.95         9.86         0.16        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.59        12.39        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       10.52        18.74        14.07        23.05        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
        9.21         2.20        11.74         2.33        20.09        16.70 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
        9.80         7.82        19.46        46.59        11.80        12.79 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0164 
        8.65         3.19         5.46         9.44        11.80        56.84 
TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
       10.65        19.04         3.12        13.02         0.23         2.20 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        2.73        51.32         1.97        53.98        19.00         2.53 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       28.47        14.93        10.29        18.28         4.67         7.04 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        2.60         0.39         6.44         5.46         3.88         4.96 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
       11.84         0.20         0.33        18.02        10.32        11.80 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       14.96        10.29         5.52         0.26        70.52         4.67 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        8.05         0.16        35.01        12.33         3.22         4.47 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.63         2.04        23.57         9.37        22.29        19.53 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        5.36         2.70         2.14         9.17         8.91         6.71 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        22.98         5.85         5.42        20.94         7.43 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        6.35         3.58        26.79         8.65         7.86        13.58 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 
        4.18         1.08         0.76         4.90         2.83         8.52 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95         6.81         5.98         4.37         0.43         9.37 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 
        3.52         8.35         4.54         8.98         8.55         2.73 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6391 TCGA-06-6693 
        6.12         4.54         3.91         7.76         1.45         0.49 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.28        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       22.68        34.75       108.82         1.74         4.34        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0354 
       10.39         7.59         3.39        53.79         1.28        15.06 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       22.52        14.70        35.64         0.95         9.17        10.85 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       15.72         3.19        10.59         0.30         0.56         3.48 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
        8.52        18.44         1.28        10.72         4.80         6.51 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
       17.29         5.52        14.40         1.61        10.39         5.95 
TCGA-12-0653 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 
       10.52         0.10        38.17        25.97        24.13         2.63 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       18.08        28.37        12.43        53.10        43.10         5.49 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        9.11        14.83        14.27        91.73        24.76        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       10.62        23.51        27.78        38.76         8.91        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
      127.56         5.82         6.21        30.54        21.63        11.97 
TCGA-12-1094 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       11.38         9.11        14.53         3.98         3.39         9.44 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.28        13.61         6.38        59.41        43.20        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5301 
       11.54        10.95        11.77        34.52        13.08         2.01 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.18        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 TCGA-14-0866 TCGA-14-0867 
       13.74         3.25         1.35         2.89        26.33         2.04 
TCGA-14-0871 TCGA-14-1034 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       28.90        15.95         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 
       32.02        58.78        23.11         7.10        30.15         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
       40.93         6.12        12.43         0.99         1.94        17.75 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.82         7.63         5.88         7.13        17.49         7.96 
TCGA-14-3477 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 
        3.75        19.10        53.19         5.49         3.91         9.93 
TCGA-16-0849 TCGA-16-0850 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
       26.07        16.31         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 
       18.28         6.41        11.77        21.86         8.61         0.43 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 
       14.27         3.39        10.75         9.07         5.95        12.95 
TCGA-19-1389 TCGA-19-1390 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
        4.64        25.38         7.13        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5950 TCGA-19-5951 TCGA-19-5953 TCGA-19-5954 
        7.00         7.04        11.28         8.02         4.73         7.96 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-26-1438 TCGA-26-1440 
        1.78         6.51         5.39         5.29        10.03         9.73 
TCGA-26-1442 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       31.33         9.37         9.40        14.86         5.49         8.84 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        1.22         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       18.25        33.14        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 
       24.72        10.39        10.39        16.08         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 
       15.75         0.20         2.53         9.17         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.18         1.51         2.83         0.13         0.66         6.74 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5207 TCGA-28-5208 TCGA-28-5211 TCGA-28-5214 
        7.30         5.26         9.04        15.55        11.77        14.20 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-6450 TCGA-32-1970 
        7.79        13.64         4.21         8.52         5.42        15.35 
TCGA-32-1973 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
       21.07         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4211 TCGA-32-4213 
        7.33         8.84         8.88         7.36        12.59        11.70 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3393 
        5.42         0.85        13.35         8.94         9.53         4.44 
TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
        6.02        11.54         7.73        17.52         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.46         4.77         4.54         3.09         3.65 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        10.78        16.67         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
       17.06        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

      6Q LOSS CNV 6Q LOSS WILD-TYPE 
             0.20              0.07 
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
            65.88            127.56 
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
             9.86              9.44 
[1] "0.2 - 65.9 (9.9)"  "0.1 - 127.6 (9.4)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
      "6Q LOSS CNV"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV"       "6Q LOSS CNV" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
      "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"       "6Q LOSS CNV" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"6Q LOSS WILD-TYPE"       "6Q LOSS CNV" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS CNV         34   45
  6Q LOSS WILD-TYPE  184  289
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  FEMALE          34               184
  MALE            45               289
D51V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  6Q LOSS CNV                                   0                   1
  6Q LOSS WILD-TYPE                             8                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  6Q LOSS CNV                                    78
  6Q LOSS WILD-TYPE                             448
D51V5, multiclass
                                 clus
vv                                6Q LOSS CNV 6Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       1                17
  UNTREATED PRIMARY (DE NOVO) GBM          78               448
D51V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS CNV         56   23
  6Q LOSS WILD-TYPE  325  148
     clus
vv    6Q LOSS CNV 6Q LOSS WILD-TYPE
  NO           56               325
  YES          23               148

Clustering(52) Variable = 7p loss
D52V1, survival
                   sevent
clus2                 0   1
  7P LOSS CNV         1   4
  7P LOSS WILD-TYPE 132 415
      7P LOSS CNV 7P LOSS WILD-TYPE 
                5               547 
      7P LOSS CNV 7P LOSS WILD-TYPE 
                4               415 
$`7P LOSS CNV`
TCGA-02-0015 TCGA-02-0432 TCGA-06-0410 TCGA-08-0516 TCGA-19-0960 
       20.61        47.11         4.67        18.44         8.61 

$`7P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       20.71        82.55        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       14.50        10.55        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         2.56        56.84        10.65         5.29        19.04 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.12        13.02         0.23         2.20         2.73        51.32 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        1.97        53.98        19.00         2.53        40.37        37.02 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       26.33        28.47        14.93        10.29        18.28         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        7.04         2.60         0.39         6.44         5.46         3.88 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        4.96        11.84         0.20        12.43        22.49         0.33 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       18.02        10.32        11.80        14.96        10.29         5.52 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
        0.26        70.52         8.05         0.16        35.01        12.33 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        3.22         4.47         9.63         2.04        23.57         9.37 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       22.29        19.53         5.36         2.70         2.14         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        9.17         8.91         6.71         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 
        5.42        20.94         7.43         6.35         3.58        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
        8.65         7.86        13.58         4.18         1.08         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.90         9.27         2.83         8.52         5.95         6.81 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        5.98         4.37         0.43         9.37        11.21         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.12         4.54         3.91         7.76 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.36         1.45         0.49         7.36         8.28        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 
        4.77         1.55         4.77         4.96        22.68        34.75 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
        3.91       108.82         1.74         4.34        13.78        10.39 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
        7.59         3.39        53.79         1.28         6.41        15.06 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       22.52        14.70        35.64        19.50         0.95         9.17 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       10.85        15.72         3.19        10.59         0.30         0.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
        3.48        11.77         8.52        58.19         1.28        10.72 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         6.51        15.98        17.29         5.52        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 
       14.40         1.61        10.39         5.95        10.52         7.17 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       65.88         0.10        38.17        25.97        24.13         6.08 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        2.63        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        5.49         9.11        14.83        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 
       18.48        10.62        23.51        27.78        38.76         8.91 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.56         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       11.97        11.38        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
        3.39         9.44        25.28        13.61         6.38        59.41 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       43.20        25.78        11.54        10.95        11.77        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       11.74        13.08         3.22         2.01        15.09        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.18        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        3.25         1.35         5.39         2.89        16.50        26.33 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
        2.04        28.90        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.02        58.78        23.11         7.10 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        1.15        30.15         0.92        40.93         6.12        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
        0.99         1.94        17.75        17.82         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 
        7.13        17.49         7.96         3.75         3.39         9.86 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
       19.10        53.19         5.49         3.91         9.93        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       16.31         4.27        29.00         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        3.65        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 
       12.95         4.64        25.38         3.48         7.13        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        0.16         4.08        16.47         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
        6.51         5.39         5.29         5.42        10.03        13.87 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
        9.73        31.33         7.10         9.37         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.84         1.22         1.58         7.92         2.30 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        4.80        16.57         9.86        18.25        33.14        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       30.05        14.04        11.51        24.72        10.39        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       16.08         7.59         2.86        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.17         8.32         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.51         2.83         0.13         0.66         6.74         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26         3.91         9.04        15.55         2.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77         9.80        14.20         7.79        13.64         4.21 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        8.52        10.49         5.42        15.35        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.83        16.93        12.23        20.78        14.99        15.95 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
        7.33         8.84         8.88         7.36        13.15         3.68 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        11.70        10.85         5.42         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44         6.02         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        17.52         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.46         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.32        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

      7P LOSS CNV 7P LOSS WILD-TYPE 
             4.67              0.07 
      7P LOSS CNV 7P LOSS WILD-TYPE 
            47.11            127.56 
      7P LOSS CNV 7P LOSS WILD-TYPE 
            18.44              9.53 
[1] "4.7 - 47.1 (18.4)" "0.1 - 127.6 (9.5)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "7P LOSS CNV" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"       "7P LOSS CNV" "7P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS CNV          2    3
  7P LOSS WILD-TYPE  216  331
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  FEMALE           2               216
  MALE             3               331
D52V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  7P LOSS CNV                                   0                   0
  7P LOSS WILD-TYPE                             8                  18
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  7P LOSS CNV                                     5
  7P LOSS WILD-TYPE                             521
D52V5, multiclass
                                 clus
vv                                7P LOSS CNV 7P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       0                18
  UNTREATED PRIMARY (DE NOVO) GBM           5               521
D52V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS CNV          4    1
  7P LOSS WILD-TYPE  377  170
     clus
vv    7P LOSS CNV 7P LOSS WILD-TYPE
  NO            4               377
  YES           1               170

Clustering(53) Variable = 7q loss
D53V1, survival
                   sevent
clus2                 0   1
  7Q LOSS CNV         0   4
  7Q LOSS WILD-TYPE 133 415
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
                4               548 
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
                4               415 
$`7Q LOSS CNV`
TCGA-02-0015 TCGA-02-0432 TCGA-06-0410 TCGA-08-0516 
       20.61        47.11         4.67        18.44 

$`7Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       20.71        82.55        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       14.50        10.55        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 
       11.80         2.56        56.84        10.65         5.29        19.04 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.12        13.02         0.23         2.20         2.73        51.32 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
        1.97        53.98        19.00         2.53        40.37        37.02 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       26.33        28.47        14.93        10.29        18.28         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        7.04         2.60         0.39         6.44         5.46         3.88 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        4.96        11.84         0.20        12.43        22.49         0.33 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       18.02        10.32        11.80        14.96        10.29         5.52 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
        0.26        70.52         8.05         0.16        35.01        12.33 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        3.22         4.47         9.63         2.04        23.57         9.37 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       22.29        19.53         5.36         2.70         2.14         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        9.17         8.91         6.71         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 
        5.42        20.94         7.43         6.35         3.58        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
        8.65         7.86        13.58         4.18         1.08         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.90         9.27         2.83         8.52         5.95         6.81 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        5.98         4.37         0.43         9.37        11.21         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.12         4.54         3.91         7.76 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.36         1.45         0.49         7.36         8.28        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 
        4.77         1.55         4.77         4.96        22.68        34.75 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
        3.91       108.82         1.74         4.34        13.78        10.39 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
        7.59         3.39        53.79         1.28         6.41        15.06 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       22.52        14.70        35.64        19.50         0.95         9.17 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       10.85        15.72         3.19        10.59         0.30         0.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
        3.48        11.77         8.52        58.19         1.28        10.72 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         6.51        15.98        17.29         5.52        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 
       14.40         1.61        10.39         5.95        10.52         7.17 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       65.88         0.10        38.17        25.97        24.13         6.08 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        2.63        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        5.49         9.11        14.83        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 
       18.48        10.62        23.51        27.78        38.76         8.91 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.56         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       11.97        11.38        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
        3.39         9.44        25.28        13.61         6.38        59.41 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       43.20        25.78        11.54        10.95        11.77        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       11.74        13.08         3.22         2.01        15.09        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.18        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        3.25         1.35         5.39         2.89        16.50        26.33 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
        2.04        28.90        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.02        58.78        23.11         7.10 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        1.15        30.15         0.92        40.93         6.12        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
        0.99         1.94        17.75        17.82         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 
        7.13        17.49         7.96         3.75         3.39         9.86 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
       19.10        53.19         5.49         3.91         9.93        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       16.31         4.27        29.00         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        3.65        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.43        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 
        5.95        12.95         4.64        25.38         3.48         7.13 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
        7.53         0.16         4.08        16.47         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        11.28         8.02        18.64         4.73         7.96 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 
        1.78         6.51         5.39         5.29         5.42        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       13.87         9.73        31.33         7.10         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.18         1.51         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77         9.80        14.20         7.79        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        4.21         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.95         7.33         8.84         8.88         7.36        13.15 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.68        12.59        11.70        10.85         5.42         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44         6.02 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        11.54         7.73         3.45        17.52         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.46         4.77         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.14         2.53        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.32        20.94         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

      7Q LOSS CNV 7Q LOSS WILD-TYPE 
             4.67              0.07 
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
            47.11            127.56 
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
           19.525             9.485 
[1] "4.7 - 47.1 (19.5)" "0.1 - 127.6 (9.5)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"       "7Q LOSS CNV" "7Q LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "7Q LOSS CNV" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS CNV          1    3
  7Q LOSS WILD-TYPE  217  331
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  FEMALE           1               217
  MALE             3               331
D53V4, continuous
[1] "Remove cluster labels:" "7Q LOSS CNV"           
clus
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
                2               407 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0016        TCGA-02-0021        TCGA-02-0023        TCGA-02-0024 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0025        TCGA-02-0026        TCGA-02-0027        TCGA-02-0028 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0033        TCGA-02-0034        TCGA-02-0037        TCGA-02-0038 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0039        TCGA-02-0043        TCGA-02-0046        TCGA-02-0047 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0051        TCGA-02-0052        TCGA-02-0054        TCGA-02-0055 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0057        TCGA-02-0058        TCGA-02-0059        TCGA-02-0060 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0064        TCGA-02-0068        TCGA-02-0069        TCGA-02-0070 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0071        TCGA-02-0074        TCGA-02-0075        TCGA-02-0079 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0080        TCGA-02-0083        TCGA-02-0084        TCGA-02-0085 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0086        TCGA-02-0087        TCGA-02-0089        TCGA-02-0099 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0102        TCGA-02-0104        TCGA-02-0106        TCGA-02-0107 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0111        TCGA-02-0113        TCGA-02-0114        TCGA-02-0115 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0116        TCGA-02-0289        TCGA-02-0290        TCGA-02-0317 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0321        TCGA-02-0324        TCGA-02-0325        TCGA-02-0326 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0330        TCGA-02-0332        TCGA-02-0337        TCGA-02-0338 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0339        TCGA-02-0422        TCGA-02-0430        TCGA-02-0440 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-0446        TCGA-02-0451        TCGA-02-0456        TCGA-02-2466 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-02-2470        TCGA-02-2483        TCGA-02-2485        TCGA-02-2486 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0125        TCGA-06-0126        TCGA-06-0127        TCGA-06-0128 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0129        TCGA-06-0130        TCGA-06-0138        TCGA-06-0139 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0141        TCGA-06-0143        TCGA-06-0149        TCGA-06-0154 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0155        TCGA-06-0157        TCGA-06-0158        TCGA-06-0162 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0168        TCGA-06-0169        TCGA-06-0171 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0174        TCGA-06-0175        TCGA-06-0176        TCGA-06-0177 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0190        TCGA-06-0192 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0195        TCGA-06-0208        TCGA-06-0211        TCGA-06-0214 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0221        TCGA-06-0238        TCGA-06-0241 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0644        TCGA-06-0646        TCGA-06-0648        TCGA-06-0743 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0744        TCGA-06-0745        TCGA-06-0747        TCGA-06-0750 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0875        TCGA-06-0876        TCGA-06-0878        TCGA-06-0879 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1805        TCGA-06-2557        TCGA-06-2558 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-2559        TCGA-06-2561        TCGA-06-2562        TCGA-06-2563 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-2564        TCGA-06-2565        TCGA-06-2566        TCGA-06-2567 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-2569        TCGA-06-2570        TCGA-06-5408        TCGA-06-5410 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-5411        TCGA-06-5412        TCGA-06-5413        TCGA-06-5414 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-5415        TCGA-06-5416        TCGA-06-5418        TCGA-06-5858 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-5859        TCGA-06-6388        TCGA-06-6389        TCGA-06-6390 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-06-6695        TCGA-06-6697        TCGA-06-6700        TCGA-08-0244 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0350 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0351        TCGA-08-0353        TCGA-08-0354        TCGA-08-0355 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0356        TCGA-08-0357        TCGA-08-0358        TCGA-08-0375 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0380        TCGA-08-0386        TCGA-08-0389        TCGA-08-0390 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0517        TCGA-08-0518        TCGA-08-0521        TCGA-08-0524 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-08-0525        TCGA-08-0529        TCGA-08-0531        TCGA-12-0615 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0616        TCGA-12-0618        TCGA-12-0619        TCGA-12-0620 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0653        TCGA-12-0656        TCGA-12-0662        TCGA-12-0670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0769        TCGA-12-0772        TCGA-12-0773        TCGA-12-0775 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0776        TCGA-12-0778        TCGA-12-0780        TCGA-12-0819 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0820        TCGA-12-0821        TCGA-12-0822        TCGA-12-0827 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-0828        TCGA-12-0829        TCGA-12-1088        TCGA-12-1090 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1599        TCGA-12-1600        TCGA-12-1602 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-3644        TCGA-12-3646        TCGA-12-3648        TCGA-12-3649 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-3650        TCGA-12-3651        TCGA-12-3652        TCGA-12-3653 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-12-5299        TCGA-12-5301        TCGA-14-0736        TCGA-14-0740 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0783        TCGA-14-0786        TCGA-14-0787        TCGA-14-0789 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0790        TCGA-14-0812        TCGA-14-0813        TCGA-14-0817 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0862        TCGA-14-0865        TCGA-14-0866        TCGA-14-0867 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-0871        TCGA-14-1034        TCGA-14-1037        TCGA-14-1043 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1395        TCGA-14-1396        TCGA-14-1401        TCGA-14-1402 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1450        TCGA-14-1451        TCGA-14-1452        TCGA-14-1453 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1454        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1795        TCGA-14-1821        TCGA-14-1823        TCGA-14-1825 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-1827        TCGA-14-1829        TCGA-14-2554        TCGA-14-2555 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-14-3477        TCGA-14-4157        TCGA-15-0742        TCGA-15-1446 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-15-1447        TCGA-15-1449        TCGA-19-0960        TCGA-19-0962 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-0964        TCGA-19-1386        TCGA-19-1387        TCGA-19-1389 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-1390        TCGA-19-1392        TCGA-19-1786        TCGA-19-1787 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-1789        TCGA-19-2619        TCGA-19-2620        TCGA-19-2623 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-5947        TCGA-19-5950        TCGA-19-5951 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-5952        TCGA-19-5954        TCGA-19-5956        TCGA-19-5958 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-19-5959        TCGA-19-5960        TCGA-26-1438        TCGA-26-1440 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5139        TCGA-26-6173 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-26-6174        TCGA-27-1830        TCGA-27-1831        TCGA-27-1832 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-1833        TCGA-27-1834        TCGA-27-1835        TCGA-27-1836 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-1837        TCGA-27-1838        TCGA-27-2518        TCGA-27-2519 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-2521        TCGA-27-2523        TCGA-27-2524        TCGA-27-2526 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-27-2527        TCGA-27-2528        TCGA-28-1746        TCGA-28-1749 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-1750        TCGA-28-1751        TCGA-28-1752        TCGA-28-1755 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5211        TCGA-28-5213 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-5214        TCGA-28-5215        TCGA-28-5216        TCGA-28-5219 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-28-5220        TCGA-32-1976        TCGA-32-1982        TCGA-32-1986 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-32-2615        TCGA-41-2571        TCGA-41-2573        TCGA-41-2575 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-74-6573        TCGA-74-6575        TCGA-74-6577        TCGA-74-6578 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-74-6581        TCGA-74-6584        TCGA-76-4925        TCGA-76-4926 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-4928        TCGA-76-4929        TCGA-76-4931        TCGA-76-4934 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-4935        TCGA-76-6191        TCGA-76-6192        TCGA-76-6193 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-6280        TCGA-76-6282        TCGA-76-6285        TCGA-76-6286 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-6656        TCGA-76-6657        TCGA-76-6661        TCGA-76-6662 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-76-6663        TCGA-76-6664        TCGA-81-5910 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  7Q LOSS CNV                                   0                   0
  7Q LOSS WILD-TYPE                             8                  18
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  7Q LOSS CNV                                     4
  7Q LOSS WILD-TYPE                             522
D53V5, multiclass
                                 clus
vv                                7Q LOSS CNV 7Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       0                18
  UNTREATED PRIMARY (DE NOVO) GBM           4               522
D53V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS CNV          3    1
  7Q LOSS WILD-TYPE  378  170
     clus
vv    7Q LOSS CNV 7Q LOSS WILD-TYPE
  NO            3               378
  YES           1               170

Clustering(54) Variable = 8p loss
D54V1, survival
                   sevent
clus2                 0   1
  8P LOSS CNV         9  25
  8P LOSS WILD-TYPE 124 394
      8P LOSS CNV 8P LOSS WILD-TYPE 
               34               518 
      8P LOSS CNV 8P LOSS WILD-TYPE 
               25               394 
$`8P LOSS CNV`
TCGA-02-0001 TCGA-02-0025 TCGA-02-0060 TCGA-02-0086 TCGA-02-0106 TCGA-02-0111 
        9.14        42.74         6.02         8.81        11.67        23.15 
TCGA-02-0115 TCGA-02-0430 TCGA-02-2486 TCGA-06-0171 TCGA-06-0195 TCGA-06-0216 
       15.65        10.55        16.18        13.02         7.04        22.49 
TCGA-06-0410 TCGA-06-2570 TCGA-06-5408 TCGA-06-6693 TCGA-08-0246 TCGA-08-0525 
        4.67         9.37        11.21         0.49         3.91        15.98 
TCGA-12-1098 TCGA-12-1598 TCGA-14-0736 TCGA-14-0862 TCGA-14-1034 TCGA-14-1450 
        3.98         9.44        15.09         2.89        15.95        58.78 
TCGA-15-1447 TCGA-16-1063 TCGA-19-1786 TCGA-26-1439 TCGA-27-2524 TCGA-28-1750 
       53.19        13.97         7.13        13.87         7.59         8.32 
TCGA-28-2514 TCGA-28-5204 TCGA-32-4208 TCGA-41-3915 
        5.26         3.91        13.15         6.02 

$`8P LOSS WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
       15.06        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        9.57        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
       10.19        20.84        27.22        89.72        22.72         0.23 
TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 
       51.29        57.76        16.93         3.48        26.99        65.00 
TCGA-02-0107 TCGA-02-0113 TCGA-02-0114 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       17.65        92.61        99.95        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       14.50        47.11        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 
       16.80        12.92        15.29        15.42         2.70         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
        4.04        47.31         0.10         3.55        22.72        32.48 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       10.52        18.74        14.07        23.05        22.16        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20         9.21         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       16.70         9.80         7.82        19.46        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.79         8.65         3.19         5.46         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        2.56        56.84        10.65         5.29        19.04         3.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
        0.23         2.20         2.73        51.32         1.97        53.98 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
       19.00         2.53        40.37        37.02        26.33        28.47 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 
       14.93        10.29        18.28         4.67         2.60         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        6.44         5.46         3.88         4.96        11.84         0.20 
TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 
       12.43         0.33        18.02        10.32        11.80        14.96 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 
       10.29         5.52         0.26        70.52         8.05         0.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.01        12.33         3.22         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57         9.37        22.29        19.53         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.14         0.92         9.17         8.91         6.71         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       22.98         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        3.58        26.79         8.65         7.86        13.58         4.18 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08         0.76         4.90         9.27         2.83         8.52 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-5410 
        5.95         6.81         5.98         4.37         0.43         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.12         4.54         3.91         7.76 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        5.36         1.45         7.36         8.28        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 
        1.55         4.77         4.96        22.68        34.75       108.82 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         4.34        13.78        10.39         7.59         3.39 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       53.79         1.28         6.41        15.06        22.52        14.70 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 
       35.64        19.50         0.95         9.17        10.85        15.72 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 
        3.19        10.59         0.30         0.56         3.48        11.77 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
        8.52        18.44        58.19         1.28        10.72         4.80 
TCGA-08-0524 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
        6.51        17.29         5.52        14.01        14.40         1.61 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       10.39         5.95        10.52         7.17        65.88         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        24.13         6.08         2.63        18.08 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.37        12.43        53.10        43.10         5.49         9.11 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.83        14.27        91.73        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.91        20.58       127.56 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         6.21        30.54        21.63        11.97        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1099 TCGA-12-1599 TCGA-12-1600 
       15.85         9.11        14.53         3.39        25.28        13.61 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
        6.38        59.41        43.20        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       11.77        34.52        11.74        13.08         3.22         2.01 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.18        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0865 TCGA-14-0866 
       13.74         3.25         1.35         5.39        16.50        26.33 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
        2.04        28.90        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
        3.75        32.02        23.11         7.10         1.15        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.93         6.12        12.43         0.99         1.94 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.75        17.82         7.63         5.88         7.13        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 
        7.96         3.75         3.39         9.86        19.10         5.49 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 
        3.91         9.93        26.07        16.31         4.27        29.00 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1460 
        0.82         9.90        13.35         3.65        18.28         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
       10.75         9.07         5.95        12.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        3.48        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        16.47         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        11.28         8.02        18.64         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        7.96         1.78         6.51         5.39         5.29         5.42 
TCGA-26-1438 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       10.03         9.73        31.33         7.10         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       10.39        16.08         2.86        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        2.53         9.17         7.59         8.45         1.18         1.51 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 
        2.83         0.13         0.66         6.74         4.77         7.30 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
        9.04        15.55         2.53        11.77         9.80        14.20 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
        7.79        13.64         4.21         8.52        10.49         5.42 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
       15.35        21.07         0.49         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        1.18         4.67        12.69        14.83        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 
       20.78        14.99        15.95         7.33         8.84         8.88 
TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
        7.36         3.68        12.59        11.70        10.85         5.42 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        11.54         7.73         3.45        17.52         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.46         4.77         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.14         2.53        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.32        20.94         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

      8P LOSS CNV 8P LOSS WILD-TYPE 
             0.49              0.07 
      8P LOSS CNV 8P LOSS WILD-TYPE 
            58.78            127.56 
      8P LOSS CNV 8P LOSS WILD-TYPE 
            9.995             9.550 
[1] "0.5 - 58.8 (10.0)" "0.1 - 127.6 (9.6)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
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"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
      "8P LOSS CNV" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" "8P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
      "8P LOSS CNV" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV"       "8P LOSS CNV" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"       "8P LOSS CNV" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D54V2, continuous
D54V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS CNV         17   17
  8P LOSS WILD-TYPE  201  317
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  FEMALE          17               201
  MALE            17               317
D54V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  8P LOSS CNV                                   0                   1
  8P LOSS WILD-TYPE                             8                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  8P LOSS CNV                                    33
  8P LOSS WILD-TYPE                             493
D54V5, multiclass
                                 clus
vv                                8P LOSS CNV 8P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       1                17
  UNTREATED PRIMARY (DE NOVO) GBM          33               493
D54V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS CNV         29    5
  8P LOSS WILD-TYPE  352  166
     clus
vv    8P LOSS CNV 8P LOSS WILD-TYPE
  NO           29               352
  YES           5               166

Clustering(55) Variable = 8q loss
D55V1, survival
                   sevent
clus2                 0   1
  8Q LOSS CNV         4  17
  8Q LOSS WILD-TYPE 129 402
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
               21               531 
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
               17               402 
$`8Q LOSS CNV`
TCGA-02-0001 TCGA-02-0025 TCGA-02-0086 TCGA-02-0106 TCGA-02-0115 TCGA-02-2486 
        9.14        42.74         8.81        11.67        15.65        16.18 
TCGA-06-0171 TCGA-06-0195 TCGA-06-0216 TCGA-06-0410 TCGA-06-5408 TCGA-08-0246 
       13.02         7.04        22.49         4.67        11.21         3.91 
TCGA-08-0525 TCGA-12-1598 TCGA-14-0736 TCGA-14-1034 TCGA-14-1450 TCGA-26-1439 
       15.98         9.44        15.09        15.95        58.78        13.87 
TCGA-27-2524 TCGA-28-1750 TCGA-28-2514 
        7.59         8.32         5.26 

$`8Q LOSS WILD-TYPE`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        4.73        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
       15.06        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        9.57         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
        5.49        10.19        20.84        27.22        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
        0.23        51.29        57.76        16.93         3.48        26.99 
TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0116 
       65.00        17.65        23.15        92.61        99.95        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
       16.54        16.90        17.69        10.75        14.47         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.86         7.69 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       10.62         0.16        15.91        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
        9.24        16.18         3.35        16.80        12.92        15.29 
TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       15.42         2.70         0.26         4.04        47.31         0.10 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        3.55        22.72        32.48        10.52        18.74        14.07 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       23.05        22.16        10.75         0.20         9.21         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        16.70         9.80         7.82 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
        5.46         9.44        11.80         2.56        56.84        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
        5.29        19.04         3.12         0.23         2.20         2.73 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       51.32         1.97        53.98        19.00         2.53        40.37 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       37.02        26.33        28.47        14.93        10.29        18.28 
TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        4.67         2.60         0.39         6.44         5.46         3.88 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 
        4.96        11.84         0.20        12.43         0.33        18.02 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       10.32        11.80        14.96        10.29         5.52         0.26 
TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
       70.52         8.05         0.16        35.01        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        4.47         9.63         2.04        23.57         9.37        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.53         5.36         2.70         2.14         0.92         9.17 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
        8.91         6.71         7.17        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
       20.94         7.43         6.35         3.58        26.79         8.65 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        7.86        13.58         4.18         1.08         0.76         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        9.27         2.83         8.52         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        4.37         0.43         9.37         3.52         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         6.71         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.12         4.54         3.91         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        0.49         7.36         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 
        4.77         4.96        22.68        34.75       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        4.34        13.78        10.39         7.59         3.39        53.79 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       19.50         0.95         9.17        10.85        15.72         3.19 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       10.59         0.30         0.56         3.48        11.77         8.52 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 
       18.44        58.19         1.28        10.72         4.80         6.51 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
       17.29         5.52        14.01        14.40         1.61        10.39 
TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 
        5.95        10.52         7.17        65.88         0.10        38.17 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        24.13         6.08         2.63        18.08        28.37 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       12.43        53.10        43.10         5.49         9.11        14.83 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.27        91.73        24.76        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       27.78        38.76         8.91        20.58       127.56         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        6.21        30.54        21.63        11.97        11.38        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1599 TCGA-12-1600 
        9.11        14.53         3.98         3.39        25.28        13.61 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
        6.38        59.41        43.20        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       11.77        34.52        11.74        13.08         3.22         2.01 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.18        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 
       13.74         3.25         1.35         5.39         2.89        16.50 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
       26.33         2.04        28.90        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        1.12         3.75        32.02        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
       30.15         0.92        40.93         6.12        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        1.94        17.75        17.82         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 
       17.49         7.96         3.75         3.39         9.86        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 
       53.19         5.49         3.91         9.93        26.07        16.31 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.27        29.00         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       18.28        13.97         6.41        11.77        21.86         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 
       12.95         4.64        25.38         3.48         7.13        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        0.16         4.08        16.47         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1440 
        6.51         5.39         5.29         5.42        10.03         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       31.33         7.10         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.84         1.22         1.58         7.92         2.30         4.80 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.57         9.86        18.25        33.14        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.72        10.39        10.39        16.08 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.75         0.20         2.53         9.17 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.59         8.45         1.18         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-5204 TCGA-28-5207 
        0.66         6.74         4.77         7.30         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.55         2.53        11.77         9.80        14.20         7.79 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         4.21         8.52        10.49         5.42        15.35 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.83        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       14.99        15.95         7.33         8.84         8.88         7.36 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       13.15         3.68        12.59        11.70        10.85         5.42 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
        6.02         0.20        11.54         7.73         3.45        17.52 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        4.31        14.33         8.22         7.46         4.77         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.09         3.65         9.14         2.53        10.78        16.67 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.32        20.94 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03         0.23         9.24         7.69         7.76 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.69         0.07 

      8Q LOSS CNV 8Q LOSS WILD-TYPE 
             3.91              0.07 
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
            58.78            127.56 
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
            11.67              9.44 
[1] "3.9 - 58.8 (11.7)" "0.1 - 127.6 (9.4)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
      "8Q LOSS CNV" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"       "8Q LOSS CNV" "8Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D55V2, continuous
D55V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS CNV         10   11
  8Q LOSS WILD-TYPE  208  323
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  FEMALE          10               208
  MALE            11               323
D55V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  8Q LOSS CNV                                   0                   1
  8Q LOSS WILD-TYPE                             8                  17
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  8Q LOSS CNV                                    20
  8Q LOSS WILD-TYPE                             506
D55V5, multiclass
                                 clus
vv                                8Q LOSS CNV 8Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       1                17
  UNTREATED PRIMARY (DE NOVO) GBM          20               506
D55V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS CNV         20    1
  8Q LOSS WILD-TYPE  361  170
     clus
vv    8Q LOSS CNV 8Q LOSS WILD-TYPE
  NO           20               361
  YES           1               170

Clustering(56) Variable = 9p loss
D56V1, survival
                   sevent
clus2                 0   1
  9P LOSS CNV        42 119
  9P LOSS WILD-TYPE  91 300
      9P LOSS CNV 9P LOSS WILD-TYPE 
              161               391 
      9P LOSS CNV 9P LOSS WILD-TYPE 
              119               300 
$`9P LOSS CNV`
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0027 TCGA-02-0048 TCGA-02-0057 
       82.55        20.61        55.86        10.36         3.19        19.86 
TCGA-02-0064 TCGA-02-0086 TCGA-02-0099 TCGA-02-0104 TCGA-02-0106 TCGA-02-0115 
       19.73         8.81         3.48        65.00        11.67        15.65 
TCGA-02-0258 TCGA-02-0285 TCGA-02-0290 TCGA-02-0330 TCGA-02-0333 TCGA-02-0339 
       16.54        13.87        15.95        15.91         4.37        12.39 
TCGA-02-0432 TCGA-06-0122 TCGA-06-0124 TCGA-06-0145 TCGA-06-0150 TCGA-06-0154 
       47.11         0.26         4.04         2.33        19.46        12.79 
TCGA-06-0158 TCGA-06-0162 TCGA-06-0164 TCGA-06-0171 TCGA-06-0177 TCGA-06-0188 
        5.46         2.56        56.84        13.02         1.97        28.47 
TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 
        5.46         4.96        11.84         0.33        18.02        10.32 
TCGA-06-0394 TCGA-06-0409 TCGA-06-0412 TCGA-06-0649 TCGA-06-0744 TCGA-06-0745 
       10.29        70.52         8.05         2.04        19.53         5.36 
TCGA-06-0747 TCGA-06-0750 TCGA-06-0876 TCGA-06-0879 TCGA-06-0882 TCGA-06-1084 
        2.70         0.92         8.91        22.98         5.42         7.43 
TCGA-06-1086 TCGA-06-1800 TCGA-06-1802 TCGA-06-2557 TCGA-06-2561 TCGA-06-2562 
        6.35        26.79         7.86         1.08         9.27         2.83 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-5415 TCGA-06-5418 TCGA-06-5859 
        6.81         5.98         4.37         8.55         2.73         4.54 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 TCGA-08-0246 
        0.49         7.36         8.28        12.85         1.55         3.91 
TCGA-08-0348 TCGA-08-0353 TCGA-08-0358 TCGA-08-0375 TCGA-08-0390 TCGA-08-0510 
       10.39         6.41        19.50         9.17        10.59         3.48 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0525 TCGA-12-0615 TCGA-12-0656 
        8.52        18.44        58.19        15.98        14.01        65.88 
TCGA-12-0670 TCGA-12-0707 TCGA-12-0778 TCGA-12-0818 TCGA-12-0821 TCGA-12-0826 
       25.97        28.37        14.83        91.73        10.62        27.78 
TCGA-12-0827 TCGA-12-1089 TCGA-12-1092 TCGA-12-1093 TCGA-12-1095 TCGA-12-1097 
       38.76         5.82        21.63        11.97        15.85        14.53 
TCGA-12-1599 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-14-0736 TCGA-14-0740 
       25.28        11.77        34.52        11.74        15.09        11.97 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0813 TCGA-14-0862 TCGA-14-1037 
        6.18        23.05         2.24         1.35         2.89        19.30 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1402 TCGA-14-1453 TCGA-14-1458 TCGA-15-1447 
        1.38         1.12        32.02         1.15         6.12        53.19 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1056 TCGA-16-1063 TCGA-19-0955 
        4.27        29.00         0.82        13.35        13.97        11.77 
TCGA-19-0960 TCGA-19-0963 TCGA-19-1388 TCGA-19-1786 TCGA-19-2619 TCGA-19-2620 
        8.61        14.27        12.95         7.13         9.67         4.87 
TCGA-19-2625 TCGA-19-2629 TCGA-19-5947 TCGA-19-5950 TCGA-19-5952 TCGA-19-5958 
        4.08        16.47         6.64        11.28        18.64         5.39 
TCGA-19-5959 TCGA-26-1439 TCGA-26-1442 TCGA-27-1833 TCGA-27-2521 TCGA-27-2526 
        5.29        13.87        31.33        18.25        10.39         2.86 
TCGA-28-1750 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 
        8.32         2.83         0.13         0.66         6.74         7.30 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5213 TCGA-28-5220 TCGA-32-1970 TCGA-32-1973 
       15.55         2.53         9.80        10.49        15.35        21.07 
TCGA-32-1976 TCGA-32-1991 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-41-2572 
        0.49        16.93        12.59        11.70        10.85        13.35 
TCGA-41-2573 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 TCGA-74-6575 TCGA-74-6584 
        8.94         0.99         4.44         0.20        17.52         7.46 
TCGA-76-4928 TCGA-76-4931 TCGA-76-6282 TCGA-76-6657 TCGA-76-6664 
        3.09         9.14        17.06         5.03         7.76 

$`9P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 
       20.71        77.62        20.12        53.06        42.74        24.59 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       90.58         2.83        14.14         3.58        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 
       18.28         6.84        14.70        15.06        12.59         6.54 
TCGA-02-0055 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0068 TCGA-02-0069 
        2.50         8.35         9.57         6.02        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0102 
       22.72         0.23        51.29        57.76        16.93        26.99 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0116 TCGA-02-0260 
       17.65        23.15        92.61        99.95        48.95        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0289 TCGA-02-0317 
       17.69        10.75        14.47         3.98        14.20        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0332 TCGA-02-0337 
        9.86         7.69        10.62         0.16        25.71        25.12 
TCGA-02-0338 TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       10.59        14.50        10.55        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.29        15.42        16.18 
TCGA-06-0119 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
        2.70        47.31         0.10         3.55        22.72        32.48 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       10.52        18.74        14.07        23.05        22.16        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0146 TCGA-06-0147 
        0.20         9.21         2.20        11.74        20.09        16.70 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0151 TCGA-06-0152 TCGA-06-0155 TCGA-06-0157 
        9.80         7.82        46.59        11.80         8.65         3.19 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        9.44        11.80        10.65         5.29        19.04         3.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 
        0.23         2.20         2.73        51.32        53.98        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 
        2.53        40.37        37.02        26.33        14.93        10.29 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       18.28         4.67         7.04         2.60         0.39         6.44 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0238 TCGA-06-0241 
        3.88         0.20        12.43        22.49        11.80        14.96 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0410 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
        5.52         0.26         4.67         0.16        35.01        12.33 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        3.22         4.47         9.63        23.57         9.37        22.29 
TCGA-06-0749 TCGA-06-0875 TCGA-06-0877 TCGA-06-0878 TCGA-06-0881 TCGA-06-0939 
        2.14         9.17         6.71         7.17         5.85        20.94 
TCGA-06-1087 TCGA-06-1801 TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 
        3.58         8.65        13.58         4.18         0.76         4.90 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        8.52         5.95         0.43         9.37        11.21         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5416 TCGA-06-5856 
        8.35         4.54         8.81         8.98         6.71         3.75 
TCGA-06-5858 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6698 
        6.12         3.91         7.76         5.36         1.45         4.77 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 
        4.77         4.96        22.68        34.75       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
        4.34        13.78         7.59         3.39        53.79         1.28 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0359 TCGA-08-0380 
       15.06        22.52        14.70        35.64         0.95        10.85 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0518 
       15.72         3.19         0.30         0.56        11.77         1.28 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 
       10.72         4.80         6.51        17.29         5.52        14.40 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0657 
        1.61        10.39         5.95        10.52         7.17         0.10 
TCGA-12-0662 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0769 
       38.17        24.13         6.08         2.63        18.08        12.43 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0780 TCGA-12-0819 
       53.10        43.10         5.49         9.11        14.27        24.76 
TCGA-12-0820 TCGA-12-0822 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1090 
       18.48        23.51         8.91        20.58       127.56         6.21 
TCGA-12-1091 TCGA-12-1094 TCGA-12-1096 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       30.54        11.38         9.11         3.98         3.39         9.44 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       13.61         6.38        59.41        43.20        25.78        11.54 
TCGA-12-3650 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0781 TCGA-14-0789 
       10.95        13.08         3.22         2.01         0.95        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0817 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 
       13.74         3.25         5.39        16.50        26.33         2.04 
TCGA-14-0871 TCGA-14-1034 TCGA-14-1043 TCGA-14-1401 TCGA-14-1450 TCGA-14-1451 
       28.90        15.95         0.79         3.75        58.78        23.11 
TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1459 TCGA-14-1794 
        7.10        30.15         0.92        40.93        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        1.94        17.75        17.82         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 
       17.49         7.96         3.75         3.39         9.86        19.10 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-1055 
        5.49         3.91         9.93        26.07        16.31         9.90 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1460 TCGA-19-0957 TCGA-19-0962 TCGA-19-0964 
        3.65        18.28         6.41        21.86         0.43         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 
       10.75         9.07         5.95         4.64        25.38         3.48 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
       12.66         3.25         0.13         1.08         7.53         0.16 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5951 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
        7.00         7.04         8.02         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5960 TCGA-26-1438 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 
        6.51         5.42        10.03         9.73         7.10         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.84         1.22         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1834 
        7.92         2.30         4.80        16.57         9.86        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
       16.08         7.59        14.40        15.75         0.20         2.53 
TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-2509 
        9.17         7.59         8.45         1.18         1.51         4.77 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5211 TCGA-28-5214 TCGA-28-5215 
        5.26         3.91         9.04        11.77        14.20         7.79 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-6450 TCGA-32-1977 TCGA-32-1978 
       13.64         4.21         8.52         5.42         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-2491 
       19.50         1.18         4.67        12.69        14.83        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 
       20.78        14.99        15.95         7.33         8.84         8.88 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-5222 TCGA-41-2571 TCGA-41-2575 
        7.36        13.15         3.68         5.42         0.85         9.53 
TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 
        6.02        11.54         7.73         3.45         4.31        14.33 
TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4929 TCGA-76-4934 TCGA-76-4935 
        8.22         4.77         4.54         3.65         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6285 TCGA-76-6286 
       16.67         3.29         2.70        11.38         8.32        20.94 
TCGA-76-6656 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-81-5910 TCGA-81-5911 
        4.83         0.23         9.24         7.69         1.61        17.69 
TCGA-87-5896 
        0.07 

      9P LOSS CNV 9P LOSS WILD-TYPE 
             0.13              0.07 
      9P LOSS CNV 9P LOSS WILD-TYPE 
            91.73            127.56 
      9P LOSS CNV 9P LOSS WILD-TYPE 
            10.32              9.40 
[1] "0.1 - 91.7 (10.3)" "0.1 - 127.6 (9.4)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
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      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
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      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
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"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
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      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
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      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
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      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
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      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
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"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
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      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
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      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
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      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
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      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
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"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
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      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
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"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
      "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
      "9P LOSS CNV" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
      "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"9P LOSS WILD-TYPE"       "9P LOSS CNV"       "9P LOSS CNV" "9P LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"       "9P LOSS CNV" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"9P LOSS WILD-TYPE"       "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
      "9P LOSS CNV" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D56V2, continuous
D56V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS CNV         65   96
  9P LOSS WILD-TYPE  153  238
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  FEMALE          65               153
  MALE            96               238
D56V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  9P LOSS CNV                                   1                   2
  9P LOSS WILD-TYPE                             7                  16
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  9P LOSS CNV                                   158
  9P LOSS WILD-TYPE                             368
D56V5, multiclass
                                 clus
vv                                9P LOSS CNV 9P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             1                 7
  TREATED PRIMARY GBM                       2                16
  UNTREATED PRIMARY (DE NOVO) GBM         158               368
D56V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS CNV        118   43
  9P LOSS WILD-TYPE  263  128
     clus
vv    9P LOSS CNV 9P LOSS WILD-TYPE
  NO          118               263
  YES          43               128

Clustering(57) Variable = 9q loss
D57V1, survival
                   sevent
clus2                 0   1
  9Q LOSS CNV        16  47
  9Q LOSS WILD-TYPE 117 372
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
               63               489 
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
               47               372 
$`9Q LOSS CNV`
TCGA-02-0016 TCGA-02-0021 TCGA-02-0057 TCGA-02-0064 TCGA-02-0086 TCGA-02-0104 
       55.86        77.62        19.86        19.73         8.81        65.00 
TCGA-02-0285 TCGA-02-0330 TCGA-02-2470 TCGA-06-0158 TCGA-06-0162 TCGA-06-0177 
       13.87        15.91        12.92         5.46         2.56         1.97 
TCGA-06-0208 TCGA-06-0210 TCGA-06-0237 TCGA-06-0409 TCGA-06-0412 TCGA-06-0876 
        5.46         4.96        10.32        70.52         8.05         8.91 
TCGA-06-1086 TCGA-06-1802 TCGA-06-2557 TCGA-06-2561 TCGA-06-5418 TCGA-06-5859 
        6.35         7.86         1.08         9.27         2.73         4.54 
TCGA-06-6694 TCGA-08-0246 TCGA-08-0358 TCGA-08-0375 TCGA-08-0517 TCGA-12-0615 
        7.36         3.91        19.50         9.17        58.19        14.01 
TCGA-12-0707 TCGA-12-0821 TCGA-12-0826 TCGA-12-1089 TCGA-12-1091 TCGA-12-1093 
       28.37        10.62        27.78         5.82        30.54        11.97 
TCGA-12-3652 TCGA-12-3653 TCGA-14-0736 TCGA-14-0740 TCGA-14-1395 TCGA-14-1396 
       34.52        11.74        15.09        11.97         1.38         1.12 
TCGA-14-1453 TCGA-15-1447 TCGA-16-1045 TCGA-16-1047 TCGA-19-1388 TCGA-19-1786 
        1.15        53.19        29.00         0.82        12.95         7.13 
TCGA-19-2619 TCGA-19-5950 TCGA-26-1439 TCGA-27-2521 TCGA-28-1757 TCGA-28-2506 
        9.67        11.28        13.87        10.39         0.13         6.74 
TCGA-28-2513 TCGA-28-5220 TCGA-32-1970 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
        7.30        10.49        15.35        12.59        11.70        10.85 
TCGA-41-2572 TCGA-74-6584 TCGA-76-6282 
       13.35         7.46        17.06 

$`9Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 
       20.71        82.55        20.61        20.12        53.06        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0058 TCGA-02-0059 
       15.06        12.59         6.54         2.50         8.35         9.57 
TCGA-02-0060 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 
        6.02        26.43        28.70        25.05         5.49        10.19 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       20.84        27.22        89.72        22.72         0.23        51.29 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 
       57.76        16.93         3.48        26.99        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       23.15        92.61        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0289 
       16.90        17.69        10.75        14.47         3.98        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       16.80        15.29        15.42        16.18         2.70         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
        4.04        47.31         0.10         3.55        22.72        32.48 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       10.52        18.74        14.07        23.05        22.16        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20         9.21         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       16.70         9.80         7.82        19.46        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0159 TCGA-06-0160 TCGA-06-0164 
       12.79         8.65         3.19         9.44        11.80        56.84 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.29        19.04         3.12        13.02         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        2.20         2.73        51.32        53.98        19.00         2.53 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       40.37        37.02        26.33        28.47        14.93        10.29 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       18.28         4.67         7.04         2.60         0.39         6.44 
TCGA-06-0209 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        3.88        11.84         0.20        12.43        22.49         0.33 
TCGA-06-0221 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       18.02        11.80        14.96        10.29         5.52         0.26 
TCGA-06-0410 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        4.67         0.16        35.01        12.33         3.22         4.47 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.63         2.04        23.57         9.37        22.29        19.53 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0877 
        5.36         2.70         2.14         0.92         9.17         6.71 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        22.98         5.85         5.42        20.94         7.43 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 
        3.58        26.79         8.65        13.58         4.18         0.76 
TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        4.90         2.83         8.52         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43         9.37        11.21         3.52         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5856 
        4.54         8.81         8.98         8.55         6.71         3.75 
TCGA-06-5858 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        6.12         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.28        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       22.68        34.75       108.82         1.74         4.34        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       10.39         7.59         3.39        53.79         1.28         6.41 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0359 TCGA-08-0380 
       15.06        22.52        14.70        35.64         0.95        10.85 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       15.72         3.19        10.59         0.30         0.56         3.48 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
       11.77         8.52        18.44         1.28        10.72         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 
        6.51        15.98        17.29         5.52        14.40         1.61 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       10.39         5.95        10.52         7.17        65.88         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        24.13         6.08         2.63        18.08 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       12.43        53.10        43.10         5.49         9.11        14.83 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0822 TCGA-12-0827 
       14.27        91.73        24.76        18.48        23.51        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1090 TCGA-12-1092 TCGA-12-1094 
        8.91        20.58       127.56         6.21        21.63        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       15.85         9.11        14.53         3.98         3.39         9.44 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.28        13.61         6.38        59.41        43.20        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       11.54        10.95        11.77        13.08         3.22         2.01 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.18        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        3.25         1.35         5.39         2.89        16.50        26.33 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1401 
        2.04        28.90        15.95        19.30         0.79         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 
       32.02        58.78        23.11         7.10        30.15         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
       40.93         6.12        12.43         0.99         1.94        17.75 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.82         7.63         5.88         7.13        17.49         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 
        3.75         3.39         9.86        19.10         5.49         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1055 TCGA-16-1056 
        9.93        26.07        16.31         4.27         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        3.65        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.43        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1787 TCGA-19-1789 
        5.95         4.64        25.38         3.48        12.66         3.25 
TCGA-19-1791 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        0.13         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5951 TCGA-19-5952 
       16.47         7.00         7.04         6.64         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73         7.96         1.78         6.51         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
        5.42        10.03         9.73        31.33         7.10         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.84         1.22         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-2502 TCGA-28-2509 TCGA-28-2514 
        1.18         1.51         2.83         0.66         4.77         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        3.91         9.04        15.55         2.53        11.77         9.80 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-6450 
       14.20         7.79        13.64         4.21         8.52         5.42 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 
       21.07         0.49         0.10        15.85        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        4.67        12.69        14.83        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       14.99        15.95         7.33         8.84         8.88         7.36 
TCGA-32-4208 TCGA-32-4210 TCGA-32-5222 TCGA-41-2571 TCGA-41-2573 TCGA-41-2575 
       13.15         3.68         5.42         0.85         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44         6.02         0.20        11.54         7.73 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 
        3.45        17.52         4.31        14.33         8.22         4.77 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 
        4.54         3.09         3.65         9.14         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6285 TCGA-76-6286 
       16.67         3.29         2.70        11.38         8.32        20.94 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03         0.23         9.24         7.69         7.76 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.69         0.07 

      9Q LOSS CNV 9Q LOSS WILD-TYPE 
             0.13              0.07 
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
            77.62            127.56 
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
            10.62              9.37 
[1] "0.1 - 77.6 (10.6)" "0.1 - 127.6 (9.4)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
      "9Q LOSS CNV"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"9Q LOSS WILD-TYPE"       "9Q LOSS CNV"       "9Q LOSS CNV"       "9Q LOSS CNV" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"       "9Q LOSS CNV" "9Q LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
      "9Q LOSS CNV" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D57V2, continuous
D57V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS CNV         34   29
  9Q LOSS WILD-TYPE  184  305
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  FEMALE          34               184
  MALE            29               305
D57V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  9Q LOSS CNV                                   0                   2
  9Q LOSS WILD-TYPE                             8                  16
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  9Q LOSS CNV                                    61
  9Q LOSS WILD-TYPE                             465
D57V5, multiclass
                                 clus
vv                                9Q LOSS CNV 9Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       2                16
  UNTREATED PRIMARY (DE NOVO) GBM          61               465
D57V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS CNV         47   16
  9Q LOSS WILD-TYPE  334  155
     clus
vv    9Q LOSS CNV 9Q LOSS WILD-TYPE
  NO           47               334
  YES          16               155

Clustering(58) Variable = 10p loss
D58V1, survival
                    sevent
clus2                  0   1
  10P LOSS CNV       103 327
  10P LOSS WILD-TYPE  30  92
      10P LOSS CNV 10P LOSS WILD-TYPE 
               430                122 
      10P LOSS CNV 10P LOSS WILD-TYPE 
               327                 92 
$`10P LOSS CNV`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
        4.73        18.35        10.59        55.86        77.62        20.12 
TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       10.36         2.83        14.14         3.58        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0055 
       18.28         6.84         3.19        15.06        12.59         2.50 
TCGA-02-0057 TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 
       19.86         9.57        19.73        26.43        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0085 TCGA-02-0086 TCGA-02-0089 
       10.19        20.84        27.22        51.29         8.81        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 TCGA-02-0116 TCGA-02-0260 TCGA-02-0269 
        3.48        26.99        11.67        48.95        16.90        10.75 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
        3.98        13.87        14.20        15.95        12.23         9.86 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
        7.69        10.62        15.91        25.71         4.37        25.12 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       14.50        10.55        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0122 TCGA-06-0124 
       16.80        15.29        15.42        16.18         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       47.31         0.10         3.55        14.07        23.05        22.16 
TCGA-06-0140 TCGA-06-0145 TCGA-06-0146 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
        0.20         2.33        20.09         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
        2.56        56.84         5.29        19.04         3.12        13.02 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0177 TCGA-06-0179 TCGA-06-0182 
        0.23         2.20         2.73         1.97        19.00         2.53 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0190 TCGA-06-0192 
       40.37        37.02        26.33        28.47        10.29        18.28 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.04         2.60         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        3.88         4.96        11.84        12.43        22.49         0.33 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0402 TCGA-06-0409 
       10.32        11.80        14.96        10.29         0.26        70.52 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        4.67         8.05        35.01        12.33         3.22         4.47 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        9.63         2.04         9.37        22.29        19.53         5.36 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.14         0.92         9.17         8.91         6.71 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 
        7.17        22.98         5.42        20.94         7.43         3.58 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-2557 TCGA-06-2558 
       26.79         8.65         7.86        13.58         1.08         0.76 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        9.27         2.83         8.52         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-5408 TCGA-06-5411 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        4.37        11.21         8.35         8.81         8.98         8.55 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6693 
        2.73         3.75         4.54         3.91         5.36         0.49 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 TCGA-06-6700 TCGA-08-0244 TCGA-08-0245 
        8.28        12.85         1.55         4.77        22.68        34.75 
TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
        3.91         1.74         4.34        13.78        10.39         7.59 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       19.50         0.95         9.17        10.85        15.72         3.19 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       10.59         0.30         0.56         3.48        11.77         8.52 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0529 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
        1.28        10.72        17.29        14.01        14.40         1.61 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       10.39         5.95        10.52         7.17        65.88         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        24.13         6.08         2.63        18.08 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       28.37        12.43        53.10         5.49         9.11        14.83 
TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       14.27        24.76        18.48        10.62        23.51        27.78 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1091 TCGA-12-1093 TCGA-12-1094 
        8.91        20.58       127.56        30.54        11.97        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 TCGA-12-1599 
       15.85         9.11        14.53         3.98         9.44        25.28 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       13.61         6.38        59.41        43.20        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.95        11.77        34.52        11.74        13.08         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
        2.01        15.09        11.97         6.18        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
       11.24        13.74         3.25         1.35         5.39         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
       16.50        26.33         2.04        28.90        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        0.79         1.38         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1794 TCGA-14-1795 
        7.10         1.15        30.15         0.92         0.99         1.94 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.82         7.63         5.88         7.13        17.49         7.96 
TCGA-15-0742 TCGA-15-1446 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
        9.86        19.10         9.93        29.00         0.82         9.90 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-19-0955 TCGA-19-0957 
       13.35         3.65        18.28        13.97        11.77        21.86 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 
        0.43        14.27         3.39         9.07         5.95        12.95 
TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        4.64         3.48         7.13         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        16.47 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5956 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 
        4.73         7.96         6.51         5.29         5.42        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       13.87         9.73         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-27-1830 TCGA-27-1831 
        8.84         1.22         1.58         7.92         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        18.25        33.14        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2527 
       11.51        24.72        10.39        16.08         7.59        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.75         0.20         2.53         9.17         8.32         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        8.45         1.18         0.13         0.66         6.74         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26         3.91         9.04        15.55         2.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 
       11.77         9.80        14.20         7.79        13.64         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
       10.49         5.42        15.35         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1982 TCGA-32-1987 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       19.50         4.67        14.83        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2634 TCGA-32-2638 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       15.95         8.88         7.36         3.68        12.59        11.70 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85         5.42         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44         6.02         0.20        11.54         7.73 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        17.52         4.31        14.33         8.22         7.46 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.77         4.54         3.09         3.65         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         1.61        17.69         0.07 

$`10P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 
        9.14        23.18        35.41        20.71        82.55        20.61 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0028 TCGA-02-0047 TCGA-02-0054 
       53.06        42.74        24.59        90.58        14.70         6.54 
TCGA-02-0058 TCGA-02-0060 TCGA-02-0069 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
        8.35         6.02        28.70        89.72        22.72         0.23 
TCGA-02-0087 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 
       57.76        65.00        17.65        23.15        92.61        99.95 
TCGA-02-0115 TCGA-02-0258 TCGA-02-0266 TCGA-02-0271 TCGA-02-0326 TCGA-02-0338 
       15.65        16.54        17.69        14.47         0.16        10.59 
TCGA-02-0339 TCGA-02-0432 TCGA-02-2470 TCGA-06-0119 TCGA-06-0128 TCGA-06-0129 
       12.39        47.11        12.92         2.70        22.72        32.48 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0139 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       10.52        18.74        10.75         9.21         2.20        11.74 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0160 TCGA-06-0165 TCGA-06-0176 TCGA-06-0178 
       16.70         9.80        11.80        10.65        51.32        53.98 
TCGA-06-0189 TCGA-06-0213 TCGA-06-0221 TCGA-06-0397 TCGA-06-0413 TCGA-06-0650 
       14.93         0.20        18.02         5.52         0.16        23.57 
TCGA-06-0881 TCGA-06-1086 TCGA-06-1805 TCGA-06-2559 TCGA-06-2569 TCGA-06-2570 
        5.85         6.35         4.18         4.90         0.43         9.37 
TCGA-06-5410 TCGA-06-5412 TCGA-06-5416 TCGA-06-5858 TCGA-06-6389 TCGA-06-6391 
        3.52         4.54         6.71         6.12         7.76         1.45 
TCGA-06-6694 TCGA-06-6698 TCGA-06-6701 TCGA-08-0344 TCGA-08-0350 TCGA-08-0351 
        7.36         4.77         4.96       108.82         3.39        53.79 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0531 
       18.44        58.19         4.80         6.51        15.98         5.52 
TCGA-12-0773 TCGA-12-0818 TCGA-12-0827 TCGA-12-1089 TCGA-12-1090 TCGA-12-1092 
       43.10        91.73        38.76         5.82         6.21        21.63 
TCGA-12-1099 TCGA-14-0781 TCGA-14-1396 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        3.39         0.95         1.12        40.93         6.12        12.43 
TCGA-14-1821 TCGA-14-3477 TCGA-14-4157 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
       17.75         3.75         3.39        53.19         5.49         3.91 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1460 TCGA-19-0960 TCGA-19-1385 
       26.07        16.31         4.27         6.41         8.61        10.75 
TCGA-19-1390 TCGA-19-1787 TCGA-19-5955 TCGA-19-5958 TCGA-26-1442 TCGA-26-1443 
       25.38        12.66         1.78         5.39        31.33         7.10 
TCGA-26-6174 TCGA-27-2521 TCGA-27-2526 TCGA-28-1755 TCGA-28-1756 TCGA-28-5218 
        2.30        10.39         2.86         1.51         2.83         4.21 
TCGA-32-1973 TCGA-32-1980 TCGA-32-1986 TCGA-32-1991 TCGA-32-2616 TCGA-32-2632 
       21.07         1.18        12.69        16.93         7.33         8.84 
TCGA-32-4208 TCGA-76-6664 
       13.15         7.76 

      10P LOSS CNV 10P LOSS WILD-TYPE 
              0.07               0.16 
      10P LOSS CNV 10P LOSS WILD-TYPE 
            127.56             108.82 
      10P LOSS CNV 10P LOSS WILD-TYPE 
              9.37              10.70 
[1] "0.1 - 127.6 (9.4)"  "0.2 - 108.8 (10.7)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
      "10P LOSS CNV"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"10P LOSS WILD-TYPE"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
      "10P LOSS CNV"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
      "10P LOSS CNV"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
      "10P LOSS CNV"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
      "10P LOSS CNV"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
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      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
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      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
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      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
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      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
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      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
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      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
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"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
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      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
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      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
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      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
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      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
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      "10P LOSS CNV"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
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      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
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      "10P LOSS CNV" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
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      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
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      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
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      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
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      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
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      "10P LOSS CNV"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
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      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
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      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
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      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
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      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
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      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
      "10P LOSS CNV"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
      "10P LOSS CNV"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
      "10P LOSS CNV" "10P LOSS WILD-TYPE"       "10P LOSS CNV" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
      "10P LOSS CNV"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"10P LOSS WILD-TYPE"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
      "10P LOSS CNV"       "10P LOSS CNV" "10P LOSS WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
      "10P LOSS CNV"       "10P LOSS CNV"       "10P LOSS CNV" 
[1] "hr=" "1.5"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS CNV        165  265
  10P LOSS WILD-TYPE   53   69
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  FEMALE          165                 53
  MALE            265                 69
D58V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  10P LOSS CNV                                   4                   7
  10P LOSS WILD-TYPE                             4                  11
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  10P LOSS CNV                                   419
  10P LOSS WILD-TYPE                             107
D58V5, multiclass
                                 clus
vv                                10P LOSS CNV 10P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              4                  4
  TREATED PRIMARY GBM                        7                 11
  UNTREATED PRIMARY (DE NOVO) GBM          419                107
D58V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS CNV        295  135
  10P LOSS WILD-TYPE   86   36
     clus
vv    10P LOSS CNV 10P LOSS WILD-TYPE
  NO           295                 86
  YES          135                 36

Clustering(59) Variable = 10q loss
D59V1, survival
                    sevent
clus2                  0   1
  10Q LOSS CNV       105 338
  10Q LOSS WILD-TYPE  28  81
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
               443                109 
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
               338                 81 
$`10Q LOSS CNV`
TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0014 
        4.73        18.35        23.18        10.59        35.41        82.55 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0026 TCGA-02-0027 TCGA-02-0033 
       55.86        77.62        20.12        24.59        10.36         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0048 TCGA-02-0052 TCGA-02-0055 TCGA-02-0057 TCGA-02-0059 TCGA-02-0064 
        3.19        12.59         2.50        19.86         9.57        19.73 
TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       26.43        25.05         5.49        10.19        20.84        27.22 
TCGA-02-0083 TCGA-02-0085 TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       22.72        51.29         8.81        16.93         3.48        26.99 
TCGA-02-0106 TCGA-02-0116 TCGA-02-0260 TCGA-02-0269 TCGA-02-0281 TCGA-02-0285 
       11.67        48.95        16.90        10.75         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.86         7.69        10.62 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0422 TCGA-02-0430 
       15.91        25.71         4.37        25.12        14.50        10.55 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2483 
       11.34         9.24        16.18         3.35        16.80        15.29 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       15.42        16.18         0.26         4.04        47.31         0.10 
TCGA-06-0127 TCGA-06-0129 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0140 
        3.55        32.48        14.07        23.05        22.16         0.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       11.74         2.33        20.09         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0162 
       11.80         8.65         3.19         5.46         9.44         2.56 
TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       56.84         5.29        19.04         3.12        13.02         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0177 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
        2.20         2.73         1.97        19.00         2.53        40.37 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       37.02        26.33        28.47        10.29        18.28         4.67 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        7.04         2.60         0.39         6.44         5.46         3.88 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        4.96        11.84        12.43        22.49         0.33        10.32 
TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       11.80        14.96        10.29         0.26        70.52         4.67 
TCGA-06-0412 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        8.05        35.01        12.33         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
        2.04         9.37        22.29        19.53         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.14         0.92         9.17         8.91         6.71         7.17 
TCGA-06-0879 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 
       22.98         5.42        20.94         7.43         3.58        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
        8.65         7.86        13.58         4.18         1.08         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.90         9.27         2.83         8.52         5.95         6.81 
TCGA-06-2566 TCGA-06-2567 TCGA-06-5408 TCGA-06-5411 TCGA-06-5413 TCGA-06-5414 
        5.98         4.37        11.21         8.35         8.81         8.98 
TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 
        8.55         2.73         3.75         4.54         3.91         5.36 
TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 TCGA-06-6700 TCGA-08-0244 
        0.49         8.28        12.85         1.55         4.77        22.68 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
       34.75         3.91         1.74         4.34        13.78        10.39 
TCGA-08-0349 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
        7.59         1.28         6.41        15.06        22.52        14.70 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 
       35.64        19.50         0.95         9.17        10.85        15.72 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 
        3.19        10.59         0.30         0.56         3.48        11.77 
TCGA-08-0514 TCGA-08-0518 TCGA-08-0520 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
        8.52         1.28        10.72        15.98        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 
       14.01        14.40         1.61        10.39         5.95        10.52 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0775 
        2.63        18.08        28.37        12.43        53.10         5.49 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
        9.11        14.83        14.27        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       23.51        27.78         8.91        20.58       127.56         5.82 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       30.54        21.63        11.38        15.85         9.11        14.53 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
        9.44        25.28        13.61         6.38        59.41        43.20 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       25.78        11.54        10.95        11.77        34.52        11.74 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0783 
       13.08         3.22         2.01        15.09        11.97         6.18 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.74         3.25         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
        5.39         2.89        16.50        26.33         2.04        28.90 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 
       15.95        19.30         0.79         1.38         3.75        32.02 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
       58.78        23.11         7.10         1.15        30.15         0.92 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
       12.43         0.99         1.94        17.82         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-15-0742 TCGA-15-1446 
        7.13        17.49         7.96         3.75         9.86        19.10 
TCGA-16-0848 TCGA-16-0850 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
        9.93        16.31        29.00         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-19-0957 TCGA-19-0962 TCGA-19-0963 
        3.65        18.28        13.97        21.86         0.43        14.27 
TCGA-19-0964 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1392 
        3.39         9.07         5.95        12.95         4.64         3.48 
TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
        7.13         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
        7.53         0.16         4.08        16.47         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        11.28         8.02        18.64         4.73         7.96 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 
        5.29         5.42        10.03        13.87         9.73         7.10 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        9.37         9.40        14.86         5.49         8.84         1.22 
TCGA-26-5139 TCGA-26-6173 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        1.58         7.92         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 
       10.39         7.59         2.86        14.40        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
        2.53         9.17         8.32         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 
        1.51         0.13         0.66         6.74         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26         3.91         9.04        15.55         2.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 
        9.80        14.20         7.79        13.64         8.52        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
        5.42        15.35         0.49         0.10        15.85        19.50 
TCGA-32-1982 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
        4.67        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
       15.95         8.88         7.36        13.15         3.68        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       11.70        10.85         5.42         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44         6.02         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        7.73         3.45        17.52         4.31        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.46         4.77         4.54         3.09         3.65         9.14 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        10.78        16.67         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.32        20.94         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.24         7.69         1.61        17.69         0.07 

$`10Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0011 TCGA-02-0015 TCGA-02-0024 TCGA-02-0025 TCGA-02-0028 
        9.14        20.71        20.61        53.06        42.74        90.58 
TCGA-02-0047 TCGA-02-0051 TCGA-02-0054 TCGA-02-0058 TCGA-02-0060 TCGA-02-0069 
       14.70        15.06         6.54         8.35         6.02        28.70 
TCGA-02-0080 TCGA-02-0084 TCGA-02-0087 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 
       89.72         0.23        57.76        65.00        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0258 TCGA-02-0266 TCGA-02-0271 
       92.61        99.95        15.65        16.54        17.69        14.47 
TCGA-02-0326 TCGA-02-0338 TCGA-02-0339 TCGA-02-0432 TCGA-02-2470 TCGA-06-0119 
        0.16        10.59        12.39        47.11        12.92         2.70 
TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 TCGA-06-0139 TCGA-06-0141 TCGA-06-0142 
       22.72        10.52        18.74        10.75         9.21         2.20 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0154 TCGA-06-0160 TCGA-06-0165 TCGA-06-0176 
       16.70         9.80        12.79        11.80        10.65        51.32 
TCGA-06-0178 TCGA-06-0189 TCGA-06-0213 TCGA-06-0221 TCGA-06-0397 TCGA-06-0413 
       53.98        14.93         0.20        18.02         5.52         0.16 
TCGA-06-0650 TCGA-06-0881 TCGA-06-1086 TCGA-06-2569 TCGA-06-2570 TCGA-06-5410 
       23.57         5.85         6.35         0.43         9.37         3.52 
TCGA-06-5412 TCGA-06-5416 TCGA-06-5858 TCGA-06-6389 TCGA-06-6391 TCGA-06-6694 
        4.54         6.71         6.12         7.76         1.45         7.36 
TCGA-06-6698 TCGA-06-6701 TCGA-08-0344 TCGA-08-0350 TCGA-08-0351 TCGA-08-0516 
        4.77         4.96       108.82         3.39        53.79        18.44 
TCGA-08-0517 TCGA-08-0521 TCGA-08-0524 TCGA-12-0691 TCGA-12-0773 TCGA-12-0818 
       58.19         4.80         6.51         6.08        43.10        91.73 
TCGA-12-0827 TCGA-12-1090 TCGA-12-1093 TCGA-12-1098 TCGA-12-1099 TCGA-14-0781 
       38.76         6.21        11.97         3.98         3.39         0.95 
TCGA-14-1396 TCGA-14-1456 TCGA-14-1458 TCGA-14-1821 TCGA-14-4157 TCGA-15-1447 
        1.12        40.93         6.12        17.75         3.39        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 TCGA-16-0861 TCGA-16-1460 TCGA-19-0955 
        5.49         3.91        26.07         4.27         6.41        11.77 
TCGA-19-0960 TCGA-19-1385 TCGA-19-1390 TCGA-19-1787 TCGA-19-5955 TCGA-19-5956 
        8.61        10.75        25.38        12.66         1.78         6.51 
TCGA-19-5958 TCGA-26-1442 TCGA-26-6174 TCGA-27-2521 TCGA-27-2523 TCGA-28-1756 
        5.39        31.33         2.30        10.39        16.08         2.83 
TCGA-28-5218 TCGA-32-1973 TCGA-32-1980 TCGA-32-1986 TCGA-32-2616 TCGA-32-2632 
        4.21        21.07         1.18        12.69         7.33         8.84 
TCGA-76-6664 
        7.76 

      10Q LOSS CNV 10Q LOSS WILD-TYPE 
              0.07               0.16 
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
            127.56             108.82 
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
              9.40              10.59 
[1] "0.1 - 127.6 (9.4)"  "0.2 - 108.8 (10.6)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
      "10Q LOSS CNV" "10Q LOSS WILD-TYPE"       "10Q LOSS CNV" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"10Q LOSS WILD-TYPE"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
      "10Q LOSS CNV"       "10Q LOSS CNV" "10Q LOSS WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
      "10Q LOSS CNV"       "10Q LOSS CNV"       "10Q LOSS CNV" 
[1] "hr=" "1.5"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS CNV        172  271
  10Q LOSS WILD-TYPE   46   63
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  FEMALE          172                 46
  MALE            271                 63
D59V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  10Q LOSS CNV                                   4                  10
  10Q LOSS WILD-TYPE                             4                   8
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  10Q LOSS CNV                                   429
  10Q LOSS WILD-TYPE                              97
D59V5, multiclass
                                 clus
vv                                10Q LOSS CNV 10Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              4                  4
  TREATED PRIMARY GBM                       10                  8
  UNTREATED PRIMARY (DE NOVO) GBM          429                 97
D59V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS CNV        306  137
  10Q LOSS WILD-TYPE   75   34
     clus
vv    10Q LOSS CNV 10Q LOSS WILD-TYPE
  NO           306                 75
  YES          137                 34

Clustering(60) Variable = 11p loss
D60V1, survival
                    sevent
clus2                  0   1
  11P LOSS CNV        13  51
  11P LOSS WILD-TYPE 120 368
      11P LOSS CNV 11P LOSS WILD-TYPE 
                64                488 
      11P LOSS CNV 11P LOSS WILD-TYPE 
                51                368 
$`11P LOSS CNV`
TCGA-02-0010 TCGA-02-0024 TCGA-02-0047 TCGA-02-0048 TCGA-02-0059 TCGA-02-0069 
       35.41        53.06        14.70         3.19         9.57        28.70 
TCGA-02-0084 TCGA-02-0086 TCGA-02-0087 TCGA-02-0114 TCGA-02-0281 TCGA-02-0332 
        0.23         8.81        57.76        99.95         3.98        25.71 
TCGA-02-2466 TCGA-06-0128 TCGA-06-0166 TCGA-06-0177 TCGA-06-0184 TCGA-06-0221 
       16.80        22.72         5.29         1.97        40.37        18.02 
TCGA-06-0238 TCGA-06-0410 TCGA-06-0414 TCGA-06-1086 TCGA-06-1800 TCGA-06-1805 
       11.80         4.67        35.01         6.35        26.79         4.18 
TCGA-06-2558 TCGA-06-2570 TCGA-06-5856 TCGA-06-6389 TCGA-06-6694 TCGA-08-0245 
        0.76         9.37         3.75         7.76         7.36        34.75 
TCGA-08-0520 TCGA-12-0616 TCGA-12-0619 TCGA-12-0691 TCGA-12-0819 TCGA-12-1602 
       10.72        14.40        10.39         6.08        24.76         6.38 
TCGA-12-3646 TCGA-12-3653 TCGA-14-0740 TCGA-14-0783 TCGA-14-0817 TCGA-14-0865 
       43.20        11.74        11.97         6.18         5.39        16.50 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1454 TCGA-14-1794 TCGA-14-1821 TCGA-14-3477 
        2.04        28.90        30.15         0.99        17.75         3.75 
TCGA-15-1447 TCGA-16-0846 TCGA-16-0850 TCGA-19-1390 TCGA-19-1392 TCGA-19-2623 
       53.19         3.91        16.31        25.38         3.48         7.53 
TCGA-26-1439 TCGA-26-5133 TCGA-27-1830 TCGA-28-1756 TCGA-28-5216 TCGA-32-2615 
       13.87        14.86         4.80         2.83        13.64        15.95 
TCGA-32-2632 TCGA-32-4719 TCGA-41-3915 TCGA-76-4934 
        8.84        10.85         6.02         2.53 

$`11P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0011 
        9.14         4.73        18.35        23.18        10.59        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 
       82.55        20.61        55.86        77.62        20.12        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0051 TCGA-02-0052 
       10.72        10.52        18.28         6.84        15.06        12.59 
TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 
        6.54         2.50        19.86         8.35         6.02        19.73 
TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       26.43        25.05         5.49        10.19        20.84        27.22 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0085 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       89.72        22.72        51.29        16.93         3.48        26.99 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 
       65.00        11.67        17.65        23.15        92.61        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 
       48.95        16.54        16.90        17.69        10.75        14.47 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.86         7.69 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
       10.62         0.16        15.91         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.24 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
       16.18         3.35        12.92        15.29        15.42        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 
       11.80         2.56        56.84        10.65        19.04         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 
       13.02         0.23         2.20         2.73        51.32        53.98 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
       19.00         2.53        37.02        26.33        28.47        14.93 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.29        18.28         4.67         7.04         2.60         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        6.44         5.46         3.88         4.96        11.84         0.20 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0241 TCGA-06-0394 
       12.43        22.49         0.33        10.32        14.96        10.29 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 
        5.52         0.26        70.52         8.05         0.16        12.33 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        3.22         4.47         9.63         2.04        23.57         9.37 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       22.29        19.53         5.36         2.70         2.14         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        9.17         8.91         6.71         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1801 TCGA-06-1802 
        5.42        20.94         7.43         3.58         8.65         7.86 
TCGA-06-1804 TCGA-06-2557 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
       13.58         1.08         4.90         9.27         2.83         8.52 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-5408 
        5.95         6.81         5.98         4.37         0.43        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.52         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 
        6.71         2.73         6.12         4.54         3.91         5.36 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        1.45         0.49         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        4.77         4.96        22.68         3.91       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        4.34        13.78        10.39         7.59         3.39        53.79 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 
       19.50         0.95         9.17        10.85        15.72         3.19 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       10.59         0.30         0.56         3.48        11.77         8.52 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       18.44        58.19         1.28         4.80         6.51        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0618 TCGA-12-0620 TCGA-12-0653 
       17.29         5.52        14.01         1.61         5.95        10.52 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        2.63        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0820 
        5.49         9.11        14.83        14.27        91.73        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       10.62        23.51        27.78        38.76         8.91        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
      127.56         5.82         6.21        30.54        21.63        11.97 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
       11.38        15.85         9.11        14.53         3.98         3.39 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 
        9.44        25.28        13.61        59.41        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        11.77        34.52        13.08         3.22         2.01 
TCGA-14-0736 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
       15.09         0.95        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 TCGA-14-1037 
        3.25         1.35         2.89        26.33        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.02        58.78 
TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
       23.11         7.10         1.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1795 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
       12.43         1.94        17.82         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 
       17.49         7.96         3.39         9.86        19.10         5.49 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
        9.93        26.07         4.27        29.00         0.82         9.90 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       13.35         3.65        18.28        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       21.86         8.61         0.43        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1786 TCGA-19-1787 
        9.07         5.95        12.95         4.64         7.13        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2624 
        3.25         0.13         9.67         4.87         1.08         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        4.08        16.47         7.00         7.04         6.64        11.28 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.64         4.73         7.96         1.78         6.51 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1440 TCGA-26-1442 
        5.39         5.29         5.42        10.03         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        7.10         9.37         9.40         5.49         8.84         1.22 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        1.58         7.92         2.30        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       10.39        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.75         0.20         2.53         9.17         8.32         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        8.45         1.18         1.51         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 
        2.53        11.77         9.80        14.20         7.79         4.21 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        8.52        10.49         5.42        15.35        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 
       14.83        16.93        12.23        20.78        14.99         7.33 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
        8.88         7.36        13.15         3.68        12.59        11.70 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
        5.42         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
        4.44         0.20        11.54         7.73         3.45        17.52 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        4.31        14.33         8.22         7.46         4.77         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.09         3.65         9.14        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.32        20.94         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

      11P LOSS CNV 11P LOSS WILD-TYPE 
              0.23               0.07 
      11P LOSS CNV 11P LOSS WILD-TYPE 
             99.95             127.56 
      11P LOSS CNV 11P LOSS WILD-TYPE 
            10.785              9.420 
[1] "0.2 - 100.0 (10.8)" "0.1 - 127.6 (9.4)" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
      "11P LOSS CNV"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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      "11P LOSS CNV" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
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        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
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        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"       "11P LOSS CNV" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"11P LOSS WILD-TYPE"       "11P LOSS CNV" "11P LOSS WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
      "11P LOSS CNV" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS CNV         30   34
  11P LOSS WILD-TYPE  188  300
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  FEMALE           30                188
  MALE             34                300
D60V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  11P LOSS CNV                                   0                   4
  11P LOSS WILD-TYPE                             8                  14
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  11P LOSS CNV                                    60
  11P LOSS WILD-TYPE                             466
D60V5, multiclass
                                 clus
vv                                11P LOSS CNV 11P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0                  8
  TREATED PRIMARY GBM                        4                 14
  UNTREATED PRIMARY (DE NOVO) GBM           60                466
D60V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS CNV         41   23
  11P LOSS WILD-TYPE  340  148
     clus
vv    11P LOSS CNV 11P LOSS WILD-TYPE
  NO            41                340
  YES           23                148

Clustering(61) Variable = 11q loss
D61V1, survival
                    sevent
clus2                  0   1
  11Q LOSS CNV         8  47
  11Q LOSS WILD-TYPE 125 372
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                55                497 
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                47                372 
$`11Q LOSS CNV`
TCGA-02-0010 TCGA-02-0024 TCGA-02-0048 TCGA-02-0059 TCGA-02-0069 TCGA-02-0086 
       35.41        53.06         3.19         9.57        28.70         8.81 
TCGA-02-0087 TCGA-02-0111 TCGA-02-0281 TCGA-02-0332 TCGA-02-0339 TCGA-06-0130 
       57.76        23.15         3.98        25.71        12.39        10.52 
TCGA-06-0166 TCGA-06-0177 TCGA-06-0184 TCGA-06-0188 TCGA-06-0190 TCGA-06-0195 
        5.29         1.97        40.37        28.47        10.29         7.04 
TCGA-06-0221 TCGA-06-0238 TCGA-06-0410 TCGA-06-0414 TCGA-06-1800 TCGA-06-5856 
       18.02        11.80         4.67        35.01        26.79         3.75 
TCGA-06-6389 TCGA-08-0245 TCGA-08-0520 TCGA-12-0616 TCGA-12-0619 TCGA-12-0691 
        7.76        34.75        10.72        14.40        10.39         6.08 
TCGA-12-0819 TCGA-12-1598 TCGA-12-1602 TCGA-12-3653 TCGA-14-0783 TCGA-14-0817 
       24.76         9.44         6.38        11.74         6.18         5.39 
TCGA-14-0865 TCGA-14-0867 TCGA-14-0871 TCGA-14-1454 TCGA-14-1794 TCGA-14-3477 
       16.50         2.04        28.90        30.15         0.99         3.75 
TCGA-16-0846 TCGA-16-0850 TCGA-19-1390 TCGA-19-1392 TCGA-19-2623 TCGA-26-1439 
        3.91        16.31        25.38         3.48         7.53        13.87 
TCGA-27-1830 TCGA-32-2615 TCGA-32-2632 TCGA-32-4719 TCGA-41-3915 TCGA-76-4934 
        4.80        15.95         8.84        10.85         6.02         2.53 
TCGA-81-5910 
        1.61 

$`11Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0011 
        9.14         4.73        18.35        23.18        10.59        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 
       82.55        20.61        55.86        77.62        20.12        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0051 
       10.72        10.52        18.28         6.84        14.70        15.06 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 
       12.59         6.54         2.50        19.86         8.35         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
       19.73        26.43        25.05         5.49        10.19        20.84 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0089 
       27.22        89.72        22.72         0.23        51.29        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0113 
        3.48        26.99        65.00        11.67        17.65        92.61 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.95        15.65        48.95        16.54        16.90        17.69 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       10.75        14.47        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0333 
        9.86         7.69        10.62         0.16        15.91         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       25.12        10.59        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
        9.24        16.18         3.35        16.80        12.92        15.29 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.42        16.18         2.70         0.26         4.04        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0132 TCGA-06-0133 
        0.10         3.55        22.72        32.48        18.74        14.07 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       23.05        22.16        10.75         0.20         9.21         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        16.70         9.80         7.82 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
        5.46         9.44        11.80         2.56        56.84        10.65 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.04         3.12        13.02         0.23         2.20         2.73 
TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 TCGA-06-0187 
       51.32        53.98        19.00         2.53        37.02        26.33 
TCGA-06-0189 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       14.93        18.28         4.67         2.60         0.39         6.44 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        5.46         3.88         4.96        11.84         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       22.49         0.33        10.32        14.96        10.29         5.52 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 
        0.26        70.52         8.05         0.16        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        4.47         9.63         2.04        23.57         9.37        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.53         5.36         2.70         2.14         0.92         9.17 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
        8.91         6.71         7.17        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1801 TCGA-06-1802 
       20.94         7.43         6.35         3.58         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.58         4.18         1.08         0.76         4.90         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
        2.83         8.52         5.95         6.81         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        0.43         9.37        11.21         3.52         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 
        8.81         8.98         8.55         6.71         2.73         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        4.54         3.91         5.36         1.45         0.49         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.28        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       22.68         3.91       108.82         1.74         4.34        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       10.39         7.59         3.39        53.79         1.28         6.41 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        9.17        10.85        15.72         3.19        10.59         0.30 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
        0.56         3.48        11.77         8.52        18.44        58.19 
TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
        1.28         4.80         6.51        15.98        17.29         5.52 
TCGA-12-0615 TCGA-12-0618 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 
       14.01         1.61         5.95        10.52         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 
        0.10        38.17        25.97        24.13         2.63        18.08 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.37        12.43        53.10        43.10         5.49         9.11 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.83        14.27        91.73        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       27.78        38.76         8.91        20.58       127.56         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        6.21        30.54        21.63        11.97        11.38        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1599 TCGA-12-1600 
        9.11        14.53         3.98         3.39        25.28        13.61 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.41        43.20        25.78        11.54        10.95        11.77 
TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       34.52        13.08         3.22         2.01        15.09        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 
        0.95        23.05         2.24        11.24        13.74         3.25 
TCGA-14-0813 TCGA-14-0862 TCGA-14-0866 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
        1.35         2.89        26.33        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        7.10         1.15         0.92        40.93         6.12        12.43 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        1.94        17.75        17.82         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 
       17.49         7.96         3.39         9.86        19.10        53.19 
TCGA-15-1449 TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        5.49         9.93        26.07         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1786 
       10.75         9.07         5.95        12.95         4.64         7.13 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        0.16         4.08        16.47         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1440 
        6.51         5.39         5.29         5.42        10.03         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       31.33         7.10         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1831 
        8.84         1.22         1.58         7.92         2.30        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        18.25        33.14        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.72        10.39        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.75         0.20         2.53         9.17 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
        8.32         7.59         8.45         1.18         1.51         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        0.13         0.66         6.74         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        3.91         9.04        15.55         2.53        11.77         9.80 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       14.20         7.79        13.64         4.21         8.52        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        5.42        15.35        21.07         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.83        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 TCGA-32-2634 TCGA-32-2638 
       12.23        20.78        14.99         7.33         8.88         7.36 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-5222 TCGA-41-2571 
       13.15         3.68        12.59        11.70         5.42         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 
       13.35         8.94         9.53         0.99         4.44         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        17.52         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.46         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        9.14        10.78        16.67         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.32        20.94         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5911 TCGA-87-5896 
        9.24         7.69         7.76        17.69         0.07 

      11Q LOSS CNV 11Q LOSS WILD-TYPE 
              0.99               0.07 
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
             57.76             127.56 
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
             10.39               9.40 
[1] "1.0 - 57.8 (10.4)" "0.1 - 127.6 (9.4)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV"       "11Q LOSS CNV" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV"       "11Q LOSS CNV" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV"       "11Q LOSS CNV" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV"       "11Q LOSS CNV" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"       "11Q LOSS CNV" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"11Q LOSS WILD-TYPE"       "11Q LOSS CNV" "11Q LOSS WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
      "11Q LOSS CNV" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D61V2, continuous
D61V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS CNV         23   32
  11Q LOSS WILD-TYPE  195  302
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  FEMALE           23                195
  MALE             32                302
D61V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  11Q LOSS CNV                                   0                   2
  11Q LOSS WILD-TYPE                             8                  16
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  11Q LOSS CNV                                    53
  11Q LOSS WILD-TYPE                             473
D61V5, multiclass
                                 clus
vv                                11Q LOSS CNV 11Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0                  8
  TREATED PRIMARY GBM                        2                 16
  UNTREATED PRIMARY (DE NOVO) GBM           53                473
D61V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS CNV         31   24
  11Q LOSS WILD-TYPE  350  147
     clus
vv    11Q LOSS CNV 11Q LOSS WILD-TYPE
  NO            31                350
  YES           24                147

Clustering(62) Variable = 12p loss
D62V1, survival
                    sevent
clus2                  0   1
  12P LOSS CNV         8  30
  12P LOSS WILD-TYPE 125 389
      12P LOSS CNV 12P LOSS WILD-TYPE 
                38                514 
      12P LOSS CNV 12P LOSS WILD-TYPE 
                30                389 
$`12P LOSS CNV`
TCGA-02-0026 TCGA-02-0055 TCGA-02-0075 TCGA-02-0102 TCGA-02-0104 TCGA-06-0159 
       24.59         2.50        20.84        26.99        65.00         9.44 
TCGA-06-0177 TCGA-06-0182 TCGA-06-0195 TCGA-06-0197 TCGA-06-0237 TCGA-06-0414 
        1.97         2.53         7.04         2.60        10.32        35.01 
TCGA-06-0686 TCGA-08-0245 TCGA-08-0386 TCGA-08-0510 TCGA-08-0514 TCGA-12-0619 
        9.37        34.75        15.72         3.48         8.52        10.39 
TCGA-12-0670 TCGA-12-3646 TCGA-14-1451 TCGA-14-3477 TCGA-16-0850 TCGA-16-1055 
       25.97        43.20        23.11         3.75        16.31         9.90 
TCGA-19-0960 TCGA-19-1388 TCGA-19-1390 TCGA-19-2623 TCGA-19-2624 TCGA-19-5960 
        8.61        12.95        25.38         7.53         0.16         5.42 
TCGA-26-1438 TCGA-26-5132 TCGA-26-5136 TCGA-27-1836 TCGA-28-5204 TCGA-32-1978 
       10.03         9.40         1.22        30.05         3.91        15.85 
TCGA-32-2494 TCGA-76-6193 
       20.78         2.70 

$`12P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       53.06        42.74        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 
        3.19        15.06        12.59         6.54        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        9.57         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
        5.49        10.19        27.22        89.72        22.72         0.23 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0106 
       51.29         8.81        57.76        16.93         3.48        11.67 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
       17.65        23.15        92.61        99.95        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
       16.54        16.90        17.69        10.75        14.47         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.86         7.69 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       10.62         0.16        15.91        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
        9.24        16.18         3.35        16.80        12.92        15.29 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.42        16.18         2.70         0.26         4.04        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
        0.10         3.55        22.72        32.48        10.52        18.74 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.07        23.05        22.16        10.75         0.20         9.21 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        16.70         9.80 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        7.82        19.46        46.59        11.80        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
        3.19         5.46        11.80         2.56        56.84        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.29        19.04         3.12        13.02         0.23         2.20 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0184 TCGA-06-0185 
        2.73        51.32        53.98        19.00        40.37        37.02 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       26.33        28.47        14.93        10.29        18.28         4.67 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 
        0.39         6.44         5.46         3.88         4.96        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 
        0.20        12.43        22.49         0.33        18.02        11.80 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       14.96        10.29         5.52         0.26        70.52         4.67 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        8.05         0.16        12.33         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
        2.04        23.57        22.29        19.53         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.14         0.92         9.17         8.91         6.71         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       22.98         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        3.58        26.79         8.65         7.86        13.58         4.18 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08         0.76         4.90         9.27         2.83         8.52 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95         6.81         5.98         4.37         0.43         9.37 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.21         3.52         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         6.71         2.73         3.75         6.12         4.54 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        3.91         7.76         5.36         1.45         0.49         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.28        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       22.68         3.91       108.82         1.74         4.34        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       10.39         7.59         3.39        53.79         1.28         6.41 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
        9.17        10.85         3.19        10.59         0.30         0.56 
TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
       11.77        18.44        58.19         1.28        10.72         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 
        6.51        15.98        17.29         5.52        14.01        14.40 
TCGA-12-0618 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
        1.61         5.95        10.52         7.17        65.88         0.10 
TCGA-12-0662 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       38.17        24.13         6.08         2.63        18.08        28.37 
TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 
       12.43        53.10        43.10         5.49         9.11        14.83 
TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 
       14.27        91.73        24.76        18.48        10.62        23.51 
TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 
       27.78        38.76         8.91        20.58       127.56         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        6.21        30.54        21.63        11.97        11.38        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 
        9.11        14.53         3.98         3.39         9.44        25.28 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
       13.61         6.38        59.41        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       11.77        34.52        11.74        13.08         3.22         2.01 
TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
       15.09        11.97         0.95         6.18        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 
       11.24        13.74         3.25         1.35         5.39         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
       16.50        26.33         2.04        28.90        15.95        19.30 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 
        0.79         1.38         1.12         3.75        32.02        58.78 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
       12.43         0.99         1.94        17.75        17.82         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 
        5.88         7.13        17.49         7.96         3.39         9.86 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
       19.10        53.19         5.49         3.91         9.93        26.07 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
        4.27        29.00         0.82        13.35         3.65        18.28 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-0963 
       13.97         6.41        11.77        21.86         0.43        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1392 
        3.39        10.75         9.07         5.95         4.64         3.48 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        7.13        12.66         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 
        1.08         4.08        16.47         7.00         7.04         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
        6.51         5.39         5.29        13.87         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5139 
        7.10         9.37        14.86         5.49         8.84         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       33.14        21.30        14.04        11.51        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.18         1.51         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        4.77         7.30         5.26         9.04        15.55         2.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77         9.80        14.20         7.79        13.64         4.21 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        8.52        10.49         5.42        15.35        21.07         0.49 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
        0.10        19.50         1.18         4.67        12.69        14.83 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 
       16.93        12.23        14.99        15.95         7.33         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
        8.88         7.36        13.15         3.68        12.59        11.70 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85         5.42         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44         6.02         0.20        11.54         7.73 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        17.52         4.31        14.33         8.22         7.46 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        4.77         4.54         3.09         3.65         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       10.78        16.67         3.29        11.38        17.06         8.32 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       20.94         4.83         5.03         0.23         9.24         7.69 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.76         1.61        17.69         0.07 

      12P LOSS CNV 12P LOSS WILD-TYPE 
              0.16               0.07 
      12P LOSS CNV 12P LOSS WILD-TYPE 
             65.00             127.56 
      12P LOSS CNV 12P LOSS WILD-TYPE 
             9.965              9.485 
[1] "0.2 - 65.0 (10.0)" "0.1 - 127.6 (9.5)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
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        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
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      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"12P LOSS WILD-TYPE"       "12P LOSS CNV"       "12P LOSS CNV" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
      "12P LOSS CNV" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"       "12P LOSS CNV" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"12P LOSS WILD-TYPE"       "12P LOSS CNV" "12P LOSS WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS CNV         14   24
  12P LOSS WILD-TYPE  204  310
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  FEMALE           14                204
  MALE             24                310
D62V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  12P LOSS CNV                                   1                   1
  12P LOSS WILD-TYPE                             7                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  12P LOSS CNV                                    36
  12P LOSS WILD-TYPE                             490
D62V5, multiclass
                                 clus
vv                                12P LOSS CNV 12P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              1                  7
  TREATED PRIMARY GBM                        1                 17
  UNTREATED PRIMARY (DE NOVO) GBM           36                490
D62V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS CNV         28   10
  12P LOSS WILD-TYPE  353  161
     clus
vv    12P LOSS CNV 12P LOSS WILD-TYPE
  NO            28                353
  YES           10                161

Clustering(63) Variable = 12q loss
D63V1, survival
                    sevent
clus2                  0   1
  12Q LOSS CNV         9  26
  12Q LOSS WILD-TYPE 124 393
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                35                517 
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                26                393 
$`12Q LOSS CNV`
TCGA-02-0055 TCGA-02-0075 TCGA-02-0102 TCGA-06-0146 TCGA-06-0159 TCGA-06-0177 
        2.50        20.84        26.99        20.09         9.44         1.97 
TCGA-06-0182 TCGA-06-0197 TCGA-06-0237 TCGA-06-0414 TCGA-06-0686 TCGA-06-5856 
        2.53         2.60        10.32        35.01         9.37         3.75 
TCGA-06-6389 TCGA-08-0245 TCGA-08-0386 TCGA-08-0514 TCGA-12-0619 TCGA-12-0670 
        7.76        34.75        15.72         8.52        10.39        25.97 
TCGA-12-1602 TCGA-12-3646 TCGA-14-0740 TCGA-14-0813 TCGA-14-1451 TCGA-14-3477 
        6.38        43.20        11.97         1.35        23.11         3.75 
TCGA-15-1447 TCGA-16-0850 TCGA-19-1388 TCGA-19-1390 TCGA-19-2623 TCGA-19-2624 
       53.19        16.31        12.95        25.38         7.53         0.16 
TCGA-19-5960 TCGA-26-1438 TCGA-26-5132 TCGA-26-5136 TCGA-32-1978 
        5.42        10.03         9.40         1.22        15.85 

$`12Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 
       14.70         3.19        15.06        12.59         6.54        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
       25.05         5.49        10.19        27.22        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
        0.23        51.29         8.81        57.76        16.93         3.48 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 
       65.00        11.67        17.65        23.15        92.61        99.95 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.90        17.69        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.86         7.69        10.62         0.16        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.24        16.18         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.29        15.42        16.18         2.70         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
        4.04        47.31         0.10         3.55        22.72        32.48 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       10.52        18.74        14.07        23.05        22.16        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0147 
        0.20         9.21         2.20        11.74         2.33        16.70 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
        9.80         7.82        19.46        46.59        11.80        12.79 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        8.65         3.19         5.46        11.80         2.56        56.84 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.29        19.04         3.12        13.02         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0184 
        2.20         2.73        51.32        53.98        19.00        40.37 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       37.02        26.33        28.47        14.93        10.29        18.28 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
        4.67         7.04         0.39         6.44         5.46         3.88 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        4.96        11.84         0.20        12.43        22.49         0.33 
TCGA-06-0221 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       18.02        11.80        14.96        10.29         5.52         0.26 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 
       70.52         4.67         8.05         0.16        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 
        4.47         9.63         2.04        23.57        22.29        19.53 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        5.36         2.70         2.14         0.92         9.17         8.91 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        6.71         7.17        22.98         5.85         5.42        20.94 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
        7.43         6.35         3.58        26.79         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.58         4.18         1.08         0.76         4.90         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 
        2.83         8.52         5.95         6.81         5.98         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        0.43         9.37        11.21         3.52         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5858 
        8.81         8.98         8.55         6.71         2.73         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        4.54         3.91         5.36         1.45         0.49         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.28        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       22.68         3.91       108.82         1.74         4.34        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       10.39         7.59         3.39        53.79         1.28         6.41 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
        9.17        10.85         3.19        10.59         0.30         0.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
        3.48        11.77        18.44        58.19         1.28        10.72 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         6.51        15.98        17.29         5.52        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 
       14.40         1.61         5.95        10.52         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
        0.10        38.17        24.13         6.08         2.63        18.08 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.37        12.43        53.10        43.10         5.49         9.11 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.83        14.27        91.73        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.91        20.58       127.56 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         6.21        30.54        21.63        11.97        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       15.85         9.11        14.53         3.98         3.39         9.44 
TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 
       25.28        13.61        59.41        25.78        11.54        10.95 
TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       11.77        34.52        11.74        13.08         3.22         2.01 
TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       15.09         0.95         6.18        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
       13.74         3.25         5.39         2.89        16.50        26.33 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
        2.04        28.90        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1452 TCGA-14-1453 
        1.12         3.75        32.02        58.78         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
       30.15         0.92        40.93         6.12        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        1.94        17.75        17.82         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 
       17.49         7.96         3.39         9.86        19.10         5.49 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        3.91         9.93        26.07         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 
       10.75         9.07         5.95         4.64         3.48         7.13 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        4.08        16.47         7.00         7.04         6.64        11.28 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.64         4.73         7.96         1.78         6.51 
TCGA-19-5958 TCGA-19-5959 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
        5.39         5.29        13.87         9.73        31.33         7.10 
TCGA-26-1799 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5139 TCGA-26-6173 
        9.37        14.86         5.49         8.84         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.18         1.51         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77         9.80        14.20         7.79        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        4.21         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.49         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.83        16.93        12.23        20.78        14.99        15.95 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
        7.33         8.84         8.88         7.36        13.15         3.68 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        11.70        10.85         5.42         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44         6.02         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        17.52         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
        8.22         7.46         4.77         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.32        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

      12Q LOSS CNV 12Q LOSS WILD-TYPE 
              0.16               0.07 
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
             53.19             127.56 
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
             10.03               9.53 
[1] "0.2 - 53.2 (10.0)" "0.1 - 127.6 (9.5)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"       "12Q LOSS CNV" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
      "12Q LOSS CNV" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"12Q LOSS WILD-TYPE"       "12Q LOSS CNV" "12Q LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D63V2, continuous
D63V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS CNV         13   22
  12Q LOSS WILD-TYPE  205  312
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  FEMALE           13                205
  MALE             22                312
D63V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  12Q LOSS CNV                                   1                   1
  12Q LOSS WILD-TYPE                             7                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  12Q LOSS CNV                                    33
  12Q LOSS WILD-TYPE                             493
D63V5, multiclass
                                 clus
vv                                12Q LOSS CNV 12Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              1                  7
  TREATED PRIMARY GBM                        1                 17
  UNTREATED PRIMARY (DE NOVO) GBM           33                493
D63V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS CNV         23   12
  12Q LOSS WILD-TYPE  358  159
     clus
vv    12Q LOSS CNV 12Q LOSS WILD-TYPE
  NO            23                358
  YES           12                159

Clustering(64) Variable = 13q loss
D64V1, survival
                    sevent
clus2                  0   1
  13Q LOSS CNV        25 111
  13Q LOSS WILD-TYPE 108 308
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
               136                416 
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
               111                308 
$`13Q LOSS CNV`
TCGA-02-0006 TCGA-02-0007 TCGA-02-0011 TCGA-02-0033 TCGA-02-0034 TCGA-02-0039 
       18.35        23.18        20.71         2.83        14.14        10.52 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0059 TCGA-02-0064 
       15.06        12.59         6.54         2.50         9.57        19.73 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0075 TCGA-02-0079 TCGA-02-0099 TCGA-02-0106 
       26.43        28.70        20.84        27.22         3.48        11.67 
TCGA-02-0115 TCGA-02-0325 TCGA-02-0330 TCGA-02-0339 TCGA-02-0440 TCGA-02-0446 
       15.65        10.62        15.91        12.39        11.34         9.24 
TCGA-02-0456 TCGA-02-2483 TCGA-06-0122 TCGA-06-0128 TCGA-06-0130 TCGA-06-0140 
        3.35        15.29         0.26        22.72        10.52         0.20 
TCGA-06-0149 TCGA-06-0152 TCGA-06-0158 TCGA-06-0159 TCGA-06-0162 TCGA-06-0164 
        7.82        11.80         5.46         9.44         2.56        56.84 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0184 TCGA-06-0188 TCGA-06-0192 TCGA-06-0195 
        5.29        19.04        40.37        28.47        18.28         7.04 
TCGA-06-0197 TCGA-06-0206 TCGA-06-0214 TCGA-06-0219 TCGA-06-0402 TCGA-06-0410 
        2.60         6.44        12.43         0.33         0.26         4.67 
TCGA-06-0414 TCGA-06-0875 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2558 
       35.01         9.17         7.86        13.58         4.18         0.76 
TCGA-06-2567 TCGA-06-5414 TCGA-06-5416 TCGA-06-5856 TCGA-06-5859 TCGA-06-6694 
        4.37         8.98         6.71         3.75         4.54         7.36 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0347 TCGA-08-0349 TCGA-08-0354 TCGA-08-0359 
       34.75         3.91        13.78         7.59        15.06         0.95 
TCGA-08-0389 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 TCGA-08-0520 TCGA-12-0615 
        3.19        11.77        18.44        58.19        10.72        14.01 
TCGA-12-0662 TCGA-12-0769 TCGA-12-0772 TCGA-12-0776 TCGA-12-0827 TCGA-12-0829 
       38.17        12.43        53.10         9.11        38.76        20.58 
TCGA-12-1088 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1097 
      127.56        30.54        21.63        11.97        11.38        14.53 
TCGA-12-1598 TCGA-12-3644 TCGA-12-3646 TCGA-12-5295 TCGA-14-0736 TCGA-14-0740 
        9.44        59.41        43.20        13.08        15.09        11.97 
TCGA-14-0783 TCGA-14-0787 TCGA-14-0812 TCGA-14-0862 TCGA-14-0865 TCGA-14-1034 
        6.18         2.24         3.25         2.89        16.50        15.95 
TCGA-14-1396 TCGA-14-1451 TCGA-14-1453 TCGA-14-1454 TCGA-14-1458 TCGA-14-3477 
        1.12        23.11         1.15        30.15         6.12         3.75 
TCGA-15-0742 TCGA-15-1447 TCGA-16-0850 TCGA-16-1045 TCGA-19-1392 TCGA-19-2621 
        9.86        53.19        16.31        29.00         3.48         1.08 
TCGA-19-2625 TCGA-19-2629 TCGA-19-5947 TCGA-26-5133 TCGA-26-6173 TCGA-27-1830 
        4.08        16.47         6.64        14.86         7.92         4.80 
TCGA-27-1834 TCGA-27-2519 TCGA-28-1750 TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 
       33.14        10.39         8.32         7.79        13.64         8.52 
TCGA-32-1987 TCGA-32-2616 TCGA-32-2634 TCGA-32-4210 TCGA-41-2573 TCGA-41-3392 
       14.83         7.33         8.88         3.68         8.94         0.99 
TCGA-41-3915 TCGA-41-4097 TCGA-74-6584 TCGA-76-4929 TCGA-76-4934 TCGA-76-4935 
        6.02         0.20         7.46         3.65         2.53        10.78 
TCGA-76-6193 TCGA-76-6285 TCGA-76-6286 TCGA-81-5911 
        2.70         8.32        20.94        17.69 

$`13Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0009 TCGA-02-0010 TCGA-02-0014 TCGA-02-0015 
        9.14         4.73        10.59        35.41        82.55        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 
       55.86        77.62        20.12        53.06        42.74        24.59 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 
       10.36        90.58         3.58        10.72        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 TCGA-02-0070 
       14.70         3.19        19.86         8.35         6.02        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
        5.49        10.19        89.72        22.72         0.23        51.29 
TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 
        8.81        57.76        16.93        26.99        65.00        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       23.15        92.61        99.95        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0326 TCGA-02-0332 
       15.95        12.23         9.86         7.69         0.16        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
        4.37        25.12        10.59        14.50        10.55        47.11 
TCGA-02-0451 TCGA-02-2466 TCGA-02-2470 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.18        16.80        12.92        15.42        16.18         2.70 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0129 TCGA-06-0132 
        4.04        47.31         0.10         3.55        32.48        18.74 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0141 TCGA-06-0142 
       14.07        23.05        22.16        10.75         9.21         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0150 
       11.74         2.33        20.09        16.70         9.80        19.46 
TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0160 TCGA-06-0165 
       46.59        12.79         8.65         3.19        11.80        10.65 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
        3.12        13.02         0.23         2.20         2.73        51.32 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 TCGA-06-0187 
        1.97        53.98        19.00         2.53        37.02        26.33 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0201 TCGA-06-0208 TCGA-06-0209 
       14.93        10.29         4.67         0.39         5.46         3.88 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0216 TCGA-06-0221 TCGA-06-0237 
        4.96        11.84         0.20        22.49        18.02        10.32 
TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0409 TCGA-06-0412 
       11.80        14.96        10.29         5.52        70.52         8.05 
TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
        0.16        12.33         3.22         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57         9.37        22.29        19.53         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        2.14         0.92         8.91         6.71         7.17        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
        5.85         5.42        20.94         7.43         6.35         3.58 
TCGA-06-1800 TCGA-06-1801 TCGA-06-2557 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       26.79         8.65         1.08         4.90         9.27         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2569 TCGA-06-2570 
        8.52         5.95         6.81         5.98         0.43         9.37 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5415 
       11.21         3.52         8.35         4.54         8.81         8.55 
TCGA-06-5418 TCGA-06-5858 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        2.73         6.12         3.91         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        0.49         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0348 
        4.96        22.68       108.82         1.74         4.34        10.39 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0355 TCGA-08-0356 
        3.39        53.79         1.28         6.41        22.52        14.70 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0390 
       35.64        19.50         9.17        10.85        15.72        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 TCGA-08-0518 TCGA-08-0521 
        0.30         0.56         3.48         8.52         1.28         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0616 TCGA-12-0618 
        6.51        15.98        17.29         5.52        14.40         1.61 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       10.39         5.95        10.52         7.17        65.88         0.10 
TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       25.97        24.13         6.08         2.63        18.08        28.37 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
       43.10         5.49        14.83        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-1089 
       18.48        10.62        23.51        27.78         8.91         5.82 
TCGA-12-1090 TCGA-12-1095 TCGA-12-1096 TCGA-12-1098 TCGA-12-1099 TCGA-12-1599 
        6.21        15.85         9.11         3.98         3.39        25.28 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       13.61         6.38        25.78        11.54        10.95        11.77 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5299 TCGA-12-5301 TCGA-14-0781 TCGA-14-0786 
       34.52        11.74         3.22         2.01         0.95        23.05 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0866 TCGA-14-0867 
       11.24        13.74         1.35         5.39        26.33         2.04 
TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 
       28.90        19.30         0.79         1.38         3.75        32.02 
TCGA-14-1450 TCGA-14-1452 TCGA-14-1455 TCGA-14-1456 TCGA-14-1459 TCGA-14-1794 
       58.78         7.10         0.92        40.93        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        1.94        17.75        17.82         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 
       17.49         7.96         3.39        19.10         5.49         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
        9.93        26.07         4.27         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        3.65        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.43        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1786 TCGA-19-1787 
        5.95        12.95         4.64        25.38         7.13        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
        3.25         0.13         9.67         4.87         7.53         0.16 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.00         7.04        11.28         8.02        18.64         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        7.96         1.78         6.51         5.39         5.29         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
       10.03        13.87         9.73        31.33         7.10         9.37 
TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6174 
        9.40         5.49         8.84         1.22         1.58         2.30 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
       16.57         9.86        18.25        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       11.51        24.72        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 
       14.40        15.75         0.20         2.53         9.17         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.45         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        6.74         4.77         7.30         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5218 
       15.55         2.53        11.77         9.80        14.20         4.21 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
       10.49         5.42        15.35        21.07         0.49         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
       15.85        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2638 
       12.23        20.78        14.99        15.95         8.84         7.36 
TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
       13.15        12.59        11.70        10.85         5.42         0.85 
TCGA-41-2572 TCGA-41-2575 TCGA-41-3393 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
       13.35         9.53         4.44        11.54         7.73         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 
       17.52         4.31        14.33         8.22         4.77         4.54 
TCGA-76-4928 TCGA-76-4931 TCGA-76-6191 TCGA-76-6192 TCGA-76-6280 TCGA-76-6282 
        3.09         9.14        16.67         3.29        11.38        17.06 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03         0.23         9.24         7.69         7.76 
TCGA-81-5910 TCGA-87-5896 
        1.61         0.07 

      13Q LOSS CNV 13Q LOSS WILD-TYPE 
              0.20               0.07 
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
            127.56             108.82 
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
             10.52               9.37 
[1] "0.2 - 127.6 (10.5)" "0.1 - 108.8 (9.4)" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
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"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
      "13Q LOSS CNV"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"       "13Q LOSS CNV" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
      "13Q LOSS CNV" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
      "13Q LOSS CNV"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV"       "13Q LOSS CNV" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"13Q LOSS WILD-TYPE"       "13Q LOSS CNV" "13Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D64V2, continuous
D64V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS CNV         57   79
  13Q LOSS WILD-TYPE  161  255
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  FEMALE           57                161
  MALE             79                255
D64V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  13Q LOSS CNV                                   2                   2
  13Q LOSS WILD-TYPE                             6                  16
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  13Q LOSS CNV                                   132
  13Q LOSS WILD-TYPE                             394
D64V5, multiclass
                                 clus
vv                                13Q LOSS CNV 13Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              2                  6
  TREATED PRIMARY GBM                        2                 16
  UNTREATED PRIMARY (DE NOVO) GBM          132                394
D64V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS CNV         93   43
  13Q LOSS WILD-TYPE  288  128
     clus
vv    13Q LOSS CNV 13Q LOSS WILD-TYPE
  NO            93                288
  YES           43                128

Clustering(65) Variable = 14q loss
D65V1, survival
                    sevent
clus2                  0   1
  14Q LOSS CNV        33  87
  14Q LOSS WILD-TYPE 100 332
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
               120                432 
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
                87                332 
$`14Q LOSS CNV`
TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0016 TCGA-02-0024 TCGA-02-0025 
       23.18        35.41        20.71        55.86        53.06        42.74 
TCGA-02-0034 TCGA-02-0039 TCGA-02-0048 TCGA-02-0055 TCGA-02-0060 TCGA-02-0074 
       14.14        10.52         3.19         2.50         6.02        10.19 
TCGA-02-0086 TCGA-02-0099 TCGA-02-0281 TCGA-02-0324 TCGA-02-0325 TCGA-02-0330 
        8.81         3.48         3.98         7.69        10.62        15.91 
TCGA-02-0332 TCGA-02-0446 TCGA-02-0456 TCGA-02-2466 TCGA-06-0128 TCGA-06-0129 
       25.71         9.24         3.35        16.80        22.72        32.48 
TCGA-06-0138 TCGA-06-0143 TCGA-06-0162 TCGA-06-0166 TCGA-06-0171 TCGA-06-0188 
       22.16        11.74         2.56         5.29        13.02        28.47 
TCGA-06-0194 TCGA-06-0216 TCGA-06-0219 TCGA-06-0241 TCGA-06-0409 TCGA-06-0410 
        4.67        22.49         0.33        14.96        70.52         4.67 
TCGA-06-0644 TCGA-06-0646 TCGA-06-0649 TCGA-06-0745 TCGA-06-0749 TCGA-06-0750 
       12.33         4.47         2.04         5.36         2.14         0.92 
TCGA-06-0875 TCGA-06-0878 TCGA-06-1084 TCGA-06-2561 TCGA-06-5411 TCGA-06-5416 
        9.17         7.17         7.43         9.27         8.35         6.71 
TCGA-06-5856 TCGA-06-5859 TCGA-06-6390 TCGA-06-6697 TCGA-06-6699 TCGA-08-0245 
        3.75         4.54         5.36        12.85         1.55        34.75 
TCGA-08-0380 TCGA-08-0390 TCGA-08-0392 TCGA-08-0512 TCGA-08-0520 TCGA-12-0615 
       10.85        10.59         0.30        11.77        10.72        14.01 
TCGA-12-0616 TCGA-12-0653 TCGA-12-0654 TCGA-12-0662 TCGA-12-0692 TCGA-12-0821 
       14.40        10.52         7.17        38.17         2.63        10.62 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 TCGA-12-1092 TCGA-12-1096 TCGA-12-1598 
      127.56         5.82        30.54        21.63         9.11         9.44 
TCGA-12-1602 TCGA-12-3653 TCGA-12-5295 TCGA-14-0736 TCGA-14-0813 TCGA-14-0862 
        6.38        11.74        13.08        15.09         1.35         2.89 
TCGA-14-1396 TCGA-14-1455 TCGA-14-1825 TCGA-14-1829 TCGA-14-3477 TCGA-15-1447 
        1.12         0.92         7.63         7.13         3.75        53.19 
TCGA-16-0861 TCGA-16-1045 TCGA-19-1389 TCGA-19-1390 TCGA-19-1791 TCGA-19-2623 
        4.27        29.00         4.64        25.38         0.13         7.53 
TCGA-19-2629 TCGA-19-5947 TCGA-19-5956 TCGA-19-5960 TCGA-26-1439 TCGA-26-1440 
       16.47         6.64         6.51         5.42        13.87         9.73 
TCGA-26-5133 TCGA-26-5134 TCGA-27-1834 TCGA-27-2519 TCGA-27-2527 TCGA-28-1750 
       14.86         5.49        33.14        10.39        14.40         8.32 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2514 TCGA-28-5207 TCGA-28-5213 TCGA-28-5215 
        6.74         4.77         5.26         9.04         9.80         7.79 
TCGA-28-5216 TCGA-28-5220 TCGA-32-2615 TCGA-32-2634 TCGA-41-2573 TCGA-41-2575 
       13.64        10.49        15.95         8.88         8.94         9.53 
TCGA-41-4097 TCGA-76-4929 TCGA-76-4934 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 
        0.20         3.65         2.53         2.70        17.06         8.32 

$`14Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0014 TCGA-02-0015 
        9.14         4.73        18.35        10.59        82.55        20.61 
TCGA-02-0021 TCGA-02-0023 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       77.62        20.12        24.59        10.36        90.58         2.83 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0051 
        3.58        10.72        18.28         6.84        14.70        15.06 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0064 
       12.59         6.54        19.86         8.35         9.57        19.73 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 
       26.43        28.70        25.05         5.49        20.84        27.22 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 
       89.72        22.72         0.23        51.29        57.76        16.93 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
       26.99        65.00        11.67        17.65        23.15        92.61 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.95        15.65        48.95        16.54        16.90        17.69 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       10.75        14.47        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0326 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
        9.86         0.16         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0451 TCGA-02-2470 
       14.50        10.55        47.11        11.34        16.18        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.29        15.42        16.18         2.70         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
       47.31         0.10         3.55        10.52        18.74        14.07 
TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 
       23.05        10.75         0.20         9.21         2.20         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 
       11.80        12.79         8.65         3.19         5.46         9.44 
TCGA-06-0160 TCGA-06-0164 TCGA-06-0165 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 
       11.80        56.84        10.65        19.04         3.12         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        2.20         2.73        51.32         1.97        53.98        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 
        2.53        40.37        37.02        26.33        14.93        10.29 
TCGA-06-0192 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
       18.28         7.04         2.60         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0221 
        3.88         4.96        11.84         0.20        12.43        18.02 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0412 
       10.32        11.80        10.29         5.52         0.26         8.05 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0645 TCGA-06-0648 TCGA-06-0650 TCGA-06-0686 
        0.16        35.01         3.22         9.63        23.57         9.37 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0747 TCGA-06-0876 TCGA-06-0877 TCGA-06-0879 
       22.29        19.53         2.70         8.91         6.71        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 
        5.85         5.42        20.94         6.35         3.58        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
        8.65         7.86        13.58         4.18         1.08         0.76 
TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        4.90         2.83         8.52         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5412 
        4.37         0.43         9.37        11.21         3.52         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5858 TCGA-06-6388 
        8.81         8.98         8.55         2.73         6.12         3.91 
TCGA-06-6389 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6698 
        7.76         1.45         0.49         7.36         8.28         4.77 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
        4.77         4.96        22.68         3.91       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        4.34        13.78        10.39         7.59         3.39        53.79 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        1.28         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0386 TCGA-08-0389 TCGA-08-0509 
       19.50         0.95         9.17        15.72         3.19         0.56 
TCGA-08-0510 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0521 
        3.48         8.52        18.44        58.19         1.28         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0618 TCGA-12-0619 
        6.51        15.98        17.29         5.52         1.61        10.39 
TCGA-12-0620 TCGA-12-0656 TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
        5.95        65.88         0.10        25.97        24.13         6.08 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       18.08        28.37        12.43        53.10        43.10         5.49 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        9.11        14.83        14.27        91.73        24.76        18.48 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1090 
       23.51        27.78        38.76         8.91        20.58         6.21 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
       11.97        11.38        15.85        14.53         3.98         3.39 
TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       25.28        13.61        59.41        43.20        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
       10.95        11.77        34.52         3.22         2.01        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.18        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0817 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
        3.25         5.39        16.50        26.33         2.04        28.90 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 
       15.95        19.30         0.79         1.38         3.75        32.02 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1456 
       58.78        23.11         7.10         1.15        30.15        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 
        6.12        12.43         0.99         1.94        17.75        17.82 
TCGA-14-1827 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 
        5.88        17.49         7.96         3.39         9.86        19.10 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-1047 
        5.49         3.91         9.93        26.07        16.31         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1392 TCGA-19-1786 
       10.75         9.07         5.95        12.95         3.48         7.13 
TCGA-19-1787 TCGA-19-1789 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2624 
       12.66         3.25         9.67         4.87         1.08         0.16 
TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        4.08         7.00         7.04        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-26-1438 
        4.73         7.96         1.78         5.39         5.29        10.03 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5135 TCGA-26-5136 
       31.33         7.10         9.37         9.40         8.84         1.22 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.30         4.80        16.57         9.86 
TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       18.25        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2528 TCGA-28-1746 
       10.39        16.08         7.59         2.86        15.75         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 
        2.53         9.17         7.59         8.45         1.18         1.51 
TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2513 TCGA-28-5204 TCGA-28-5208 
        2.83         0.13         0.66         7.30         3.91        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5214 TCGA-28-5218 TCGA-28-5219 TCGA-28-6450 
        2.53        11.77        14.20         4.21         8.52         5.42 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
       15.35        21.07         0.49         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 
        1.18         4.67        12.69        14.83        16.93        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2616 TCGA-32-2632 TCGA-32-2638 TCGA-32-4208 
       20.78        14.99         7.33         8.84         7.36        13.15 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.68        12.59        11.70        10.85         5.42         0.85 
TCGA-41-2572 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 
       13.35         0.99         4.44         6.02        11.54         7.73 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 
        3.45        17.52         4.31        14.33         8.22         7.46 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 
        4.77         4.54         3.09         9.14        10.78        16.67 
TCGA-76-6192 TCGA-76-6280 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
        3.29        11.38        20.94         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.24         7.69         7.76         1.61        17.69         0.07 

      14Q LOSS CNV 14Q LOSS WILD-TYPE 
              0.13               0.07 
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
            127.56             108.82 
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
              9.14               9.86 
[1] "0.1 - 127.6 (9.1)" "0.1 - 108.8 (9.9)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
      "14Q LOSS CNV"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV"       "14Q LOSS CNV" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV"       "14Q LOSS CNV" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV"       "14Q LOSS CNV" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV"       "14Q LOSS CNV" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
      "14Q LOSS CNV"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
      "14Q LOSS CNV"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV"       "14Q LOSS CNV" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
      "14Q LOSS CNV"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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      "14Q LOSS CNV" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE"       "14Q LOSS CNV"       "14Q LOSS CNV" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"       "14Q LOSS CNV" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
      "14Q LOSS CNV" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"14Q LOSS WILD-TYPE"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
      "14Q LOSS CNV"       "14Q LOSS CNV" "14Q LOSS WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D65V2, continuous
D65V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS CNV         49   71
  14Q LOSS WILD-TYPE  169  263
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  FEMALE           49                169
  MALE             71                263
D65V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  14Q LOSS CNV                                   0                   4
  14Q LOSS WILD-TYPE                             8                  14
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  14Q LOSS CNV                                   116
  14Q LOSS WILD-TYPE                             410
D65V5, multiclass
                                 clus
vv                                14Q LOSS CNV 14Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0                  8
  TREATED PRIMARY GBM                        4                 14
  UNTREATED PRIMARY (DE NOVO) GBM          116                410
D65V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS CNV         85   35
  14Q LOSS WILD-TYPE  296  136
     clus
vv    14Q LOSS CNV 14Q LOSS WILD-TYPE
  NO            85                296
  YES           35                136

Clustering(66) Variable = 15q loss
D66V1, survival
                    sevent
clus2                  0   1
  15Q LOSS CNV        15  47
  15Q LOSS WILD-TYPE 118 372
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
                62                490 
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
                47                372 
$`15Q LOSS CNV`
TCGA-02-0003 TCGA-02-0034 TCGA-02-0048 TCGA-06-0124 TCGA-06-0128 TCGA-06-0129 
        4.73        14.14         3.19         4.04        22.72        32.48 
TCGA-06-0213 TCGA-06-0216 TCGA-06-0410 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
        0.20        22.49         4.67         4.47         9.63         2.04 
TCGA-06-0875 TCGA-06-1801 TCGA-06-2558 TCGA-06-5416 TCGA-06-5856 TCGA-06-6694 
        9.17         8.65         0.76         6.71         3.75         7.36 
TCGA-08-0246 TCGA-08-0348 TCGA-08-0359 TCGA-08-0386 TCGA-12-0618 TCGA-12-0619 
        3.91        10.39         0.95        15.72         1.61        10.39 
TCGA-12-1088 TCGA-12-1099 TCGA-12-1600 TCGA-12-3646 TCGA-14-0783 TCGA-14-0817 
      127.56         3.39        13.61        43.20         6.18         5.39 
TCGA-14-1794 TCGA-15-1447 TCGA-15-1449 TCGA-16-0850 TCGA-16-1045 TCGA-19-1387 
        0.99        53.19         5.49        16.31        29.00         5.95 
TCGA-19-1390 TCGA-19-1392 TCGA-19-2629 TCGA-19-5955 TCGA-26-1439 TCGA-26-6174 
       25.38         3.48        16.47         1.78        13.87         2.30 
TCGA-27-1834 TCGA-27-2519 TCGA-27-2524 TCGA-28-1746 TCGA-28-1750 TCGA-28-1756 
       33.14        10.39         7.59         0.20         8.32         2.83 
TCGA-28-5215 TCGA-28-5219 TCGA-32-1973 TCGA-32-1976 TCGA-32-2616 TCGA-32-4210 
        7.79         8.52        21.07         0.49         7.33         3.68 
TCGA-32-4211 TCGA-41-2573 TCGA-41-3915 TCGA-41-5651 TCGA-76-4929 TCGA-76-4935 
       12.59         8.94         6.02        11.54         3.65        10.78 
TCGA-76-6191 TCGA-76-6286 
       16.67        20.94 

$`15Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        9.14        18.35        23.18        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0037 
       42.74        24.59        10.36        90.58         2.83         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0051 
       10.72        10.52        18.28         6.84        14.70        15.06 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       12.59         6.54         2.50        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        6.02        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
       10.19        20.84        27.22        89.72        22.72         0.23 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.29         8.81        57.76        16.93         3.48        26.99 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 
       65.00        11.67        17.65        23.15        92.61        99.95 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.90        17.69        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.86         7.69        10.62         0.16        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.24        16.18         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.29        15.42        16.18         2.70         0.26 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
       47.31         0.10         3.55        10.52        18.74        14.07 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       23.05        22.16        10.75         0.20         9.21         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        16.70         9.80         7.82 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
        5.46         9.44        11.80         2.56        56.84        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.29        19.04         3.12        13.02         0.23         2.20 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        2.73        51.32         1.97        53.98        19.00         2.53 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       40.37        37.02        26.33        28.47        14.93        10.29 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       18.28         4.67         7.04         2.60         0.39         6.44 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0214 TCGA-06-0219 
        5.46         3.88         4.96        11.84        12.43         0.33 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
       18.02        10.32        11.80        14.96        10.29         5.52 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 
        0.26        70.52         8.05         0.16        35.01        12.33 
TCGA-06-0645 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        3.22        23.57         9.37        22.29        19.53         5.36 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         2.14         0.92         8.91         6.71         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       22.98         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
        3.58        26.79         7.86        13.58         4.18         1.08 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.90         9.27         2.83         8.52         5.95         6.81 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        5.98         4.37         0.43         9.37        11.21         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 
        8.35         4.54         8.81         8.98         8.55         2.73 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.12         4.54         3.91         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        0.49         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
        4.96        22.68        34.75       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       13.78         7.59         3.39        53.79         1.28         6.41 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0375 
       15.06        22.52        14.70        35.64        19.50         9.17 
TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       10.85         3.19        10.59         0.30         0.56         3.48 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
       11.77         8.52        18.44        58.19         1.28        10.72 
TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 
        4.80         6.51        15.98        17.29         5.52        14.01 
TCGA-12-0616 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 
       14.40         5.95        10.52         7.17        65.88         0.10 
TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 
       38.17        25.97        24.13         6.08         2.63        18.08 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 
       28.37        12.43        53.10        43.10         5.49         9.11 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.83        14.27        91.73        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1089 
       23.51        27.78        38.76         8.91        20.58         5.82 
TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 
        6.21        30.54        21.63        11.97        11.38        15.85 
TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 TCGA-12-1599 TCGA-12-1602 
        9.11        14.53         3.98         9.44        25.28         6.38 
TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       59.41        25.78        11.54        10.95        11.77        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       11.74        13.08         3.22         2.01        15.09        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 
        0.95        23.05         2.24        11.24        13.74         3.25 
TCGA-14-0813 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
        1.35         2.89        16.50        26.33         2.04        28.90 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.02        58.78        23.11         7.10         1.15        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 
        0.92        40.93         6.12        12.43         1.94        17.75 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.82         7.63         5.88         7.13        17.49         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-16-0846 TCGA-16-0848 
        3.75         3.39         9.86        19.10         3.91         9.93 
TCGA-16-0849 TCGA-16-0861 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
       26.07         4.27         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       18.28        13.97         6.41        11.77        21.86         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1388 
        0.43        14.27         3.39        10.75         9.07        12.95 
TCGA-19-1389 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        4.64         7.13        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 
        4.87         1.08         7.53         0.16         4.08         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        11.28         8.02        18.64         4.73 
TCGA-19-5954 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 
        7.96         6.51         5.39         5.29         5.42        10.03 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 
        9.73        31.33         7.10         9.37         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-27-1830 
        5.49         8.84         1.22         1.58         7.92         4.80 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
       16.57         9.86        18.25        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2521 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 
       11.51        24.72        10.39        16.08         2.86        14.40 
TCGA-27-2528 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
       15.75         2.53         9.17         7.59         8.45         1.18 
TCGA-28-1755 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 
        1.51         0.13         0.66         6.74         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26         3.91         9.04        15.55         2.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 TCGA-28-5220 TCGA-28-6450 
        9.80        14.20        13.64         4.21        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
       15.35         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4213 
       15.95         8.84         8.88         7.36        13.15        11.70 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2575 TCGA-41-3392 
       10.85         5.42         0.85        13.35         9.53         0.99 
TCGA-41-3393 TCGA-41-4097 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        4.44         0.20         7.73         3.45        17.52         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.46         4.77         4.54         3.09 
TCGA-76-4931 TCGA-76-4934 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
        9.14         2.53         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
        8.32         4.83         5.03         0.23         9.24         7.69 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.76         1.61        17.69         0.07 

      15Q LOSS CNV 15Q LOSS WILD-TYPE 
              0.20               0.07 
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
            127.56             108.82 
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
              7.69               9.86 
[1] "0.2 - 127.6 (7.7)" "0.1 - 108.8 (9.9)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
      "15Q LOSS CNV"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
      "15Q LOSS CNV" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV" "15Q LOSS WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"15Q LOSS WILD-TYPE"       "15Q LOSS CNV"       "15Q LOSS CNV" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"       "15Q LOSS CNV" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D66V2, continuous
D66V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS CNV         30   32
  15Q LOSS WILD-TYPE  188  302
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  FEMALE           30                188
  MALE             32                302
D66V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  15Q LOSS CNV                                   0                   0
  15Q LOSS WILD-TYPE                             8                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  15Q LOSS CNV                                    62
  15Q LOSS WILD-TYPE                             464
D66V5, multiclass
                                 clus
vv                                15Q LOSS CNV 15Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0                  8
  TREATED PRIMARY GBM                        0                 18
  UNTREATED PRIMARY (DE NOVO) GBM           62                464
D66V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS CNV         39   23
  15Q LOSS WILD-TYPE  342  148
     clus
vv    15Q LOSS CNV 15Q LOSS WILD-TYPE
  NO            39                342
  YES           23                148

Clustering(67) Variable = 16p loss
D67V1, survival
                    sevent
clus2                  0   1
  16P LOSS CNV         4  19
  16P LOSS WILD-TYPE 129 400
      16P LOSS CNV 16P LOSS WILD-TYPE 
                23                529 
      16P LOSS CNV 16P LOSS WILD-TYPE 
                19                400 
$`16P LOSS CNV`
TCGA-02-0009 TCGA-02-0074 TCGA-02-0281 TCGA-02-0456 TCGA-02-2486 TCGA-06-0168 
       10.59        10.19         3.98         3.35        16.18        19.04 
TCGA-06-0414 TCGA-06-1087 TCGA-06-5859 TCGA-08-0509 TCGA-08-0514 TCGA-12-0776 
       35.01         3.58         4.54         0.56         8.52         9.11 
TCGA-12-3653 TCGA-14-0813 TCGA-14-0871 TCGA-19-1392 TCGA-27-1835 TCGA-27-2521 
       11.74         1.35        28.90         3.48        21.30        10.39 
TCGA-27-2524 TCGA-28-1750 TCGA-28-5204 TCGA-32-1978 TCGA-76-4925 
        7.59         8.32         3.91        15.85         4.77 

$`16P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 
        9.14         4.73        18.35        23.18        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
       25.05         5.49        20.84        27.22        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
        0.23        51.29         8.81        57.76        16.93         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
       26.99        65.00        11.67        17.65        23.15        92.61 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.95        15.65        48.95        16.54        16.90        17.69 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       10.75        14.47        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.86         7.69        10.62         0.16        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2466 TCGA-02-2470 
       47.11        11.34         9.24        16.18        16.80        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.29        15.42         2.70         0.26         4.04        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
        0.10         3.55        22.72        32.48        10.52        18.74 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.07        23.05        22.16        10.75         0.20         9.21 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        16.70         9.80 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        7.82        19.46        46.59        11.80        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19         5.46         9.44        11.80         2.56        56.84 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
       10.65         5.29         3.12        13.02         0.23         2.20 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        2.73        51.32         1.97        53.98        19.00         2.53 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       40.37        37.02        26.33        28.47        14.93        10.29 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       18.28         4.67         7.04         2.60         0.39         6.44 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        5.46         3.88         4.96        11.84         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 
       22.49         0.33        18.02        10.32        11.80        14.96 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
       10.29         5.52         0.26        70.52         4.67         8.05 
TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
        0.16        12.33         3.22         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57         9.37        22.29        19.53         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.14         0.92         9.17         8.91         6.71         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       22.98         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
       26.79         8.65         7.86        13.58         4.18         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        0.76         4.90         9.27         2.83         8.52         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        6.81         5.98         4.37         0.43         9.37        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.52         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-6388 TCGA-06-6389 
        6.71         2.73         3.75         6.12         3.91         7.76 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.36         1.45         0.49         7.36         8.28        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 
        4.77         1.55         4.77         4.96        22.68        34.75 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
        3.91       108.82         1.74         4.34        13.78        10.39 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
        7.59         3.39        53.79         1.28         6.41        15.06 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       22.52        14.70        35.64        19.50         0.95         9.17 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0510 
       10.85        15.72         3.19        10.59         0.30         3.48 
TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
       11.77        18.44        58.19         1.28        10.72         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 
        6.51        15.98        17.29         5.52        14.01        14.40 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 
        1.61        10.39         5.95        10.52         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        24.13         6.08         2.63 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       18.08        28.37        12.43        53.10        43.10         5.49 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 
       14.83        14.27        91.73        24.76        18.48        10.62 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       23.51        27.78        38.76         8.91        20.58       127.56 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         6.21        30.54        21.63        11.97        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       15.85         9.11        14.53         3.98         3.39         9.44 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.28        13.61         6.38        59.41        43.20        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 
       11.54        10.95        11.77        34.52        13.08         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        2.01        15.09        11.97         0.95         6.18        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0817 TCGA-14-0862 
        2.24        11.24        13.74         3.25         5.39         2.89 
TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 
       16.50        26.33         2.04        15.95        19.30         0.79 
TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 
        1.38         1.12         3.75        32.02        58.78        23.11 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        7.10         1.15        30.15         0.92        40.93         6.12 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
       12.43         0.99         1.94        17.75        17.82         7.63 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 
        5.88         7.13        17.49         7.96         3.75         3.39 
TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 
        9.86        19.10        53.19         5.49         3.91         9.93 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
       26.07        16.31         4.27        29.00         0.82         9.90 
TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 
       13.35         3.65        18.28        13.97         6.41        11.77 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 
       21.86         8.61         0.43        14.27         3.39        10.75 
TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1786 
        9.07         5.95        12.95         4.64        25.38         7.13 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
       12.66         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
        7.53         0.16         4.08        16.47         7.00         7.04 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        11.28         8.02        18.64         4.73         7.96 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 
        1.78         6.51         5.39         5.29         5.42        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       13.87         9.73        31.33         7.10         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 
       30.05        14.04        11.51        24.72        10.39        16.08 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.75         0.20         2.53         9.17 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.59         8.45         1.18         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5207 
        0.66         6.74         4.77         7.30         5.26         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.55         2.53        11.77         9.80        14.20         7.79 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         4.21         8.52        10.49         5.42        15.35 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
       21.07         0.49         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.95         7.33         8.84         8.88         7.36        13.15 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.68        12.59        11.70        10.85         5.42         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44         6.02 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        11.54         7.73         3.45        17.52         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 
       14.33         8.22         7.46         4.54         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.32        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

      16P LOSS CNV 16P LOSS WILD-TYPE 
              0.56               0.07 
      16P LOSS CNV 16P LOSS WILD-TYPE 
             35.01             127.56 
      16P LOSS CNV 16P LOSS WILD-TYPE 
              8.52               9.63 
[1] "0.6 - 35.0 (8.5)"  "0.1 - 127.6 (9.6)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
      "16P LOSS CNV" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
      "16P LOSS CNV" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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      "16P LOSS CNV" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"       "16P LOSS CNV" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
      "16P LOSS CNV" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
      "16P LOSS CNV" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"16P LOSS WILD-TYPE"       "16P LOSS CNV" "16P LOSS WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS CNV         11   12
  16P LOSS WILD-TYPE  207  322
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  FEMALE           11                207
  MALE             12                322
D67V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  16P LOSS CNV                                   0                   0
  16P LOSS WILD-TYPE                             8                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  16P LOSS CNV                                    23
  16P LOSS WILD-TYPE                             503
D67V5, multiclass
                                 clus
vv                                16P LOSS CNV 16P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0                  8
  TREATED PRIMARY GBM                        0                 18
  UNTREATED PRIMARY (DE NOVO) GBM           23                503
D67V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS CNV         16    7
  16P LOSS WILD-TYPE  365  164
     clus
vv    16P LOSS CNV 16P LOSS WILD-TYPE
  NO            16                365
  YES            7                164

Clustering(68) Variable = 16q loss
D68V1, survival
                    sevent
clus2                  0   1
  16Q LOSS CNV         4  36
  16Q LOSS WILD-TYPE 129 383
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
                40                512 
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
                36                383 
$`16Q LOSS CNV`
TCGA-02-0009 TCGA-02-0074 TCGA-02-0114 TCGA-02-0321 TCGA-02-0337 TCGA-02-0456 
       10.59        10.19        99.95         9.86        25.12         3.35 
TCGA-02-2486 TCGA-06-0168 TCGA-06-0171 TCGA-06-0214 TCGA-06-0414 TCGA-06-0749 
       16.18        19.04        13.02        12.43        35.01         2.14 
TCGA-06-1087 TCGA-06-2557 TCGA-06-5418 TCGA-06-5859 TCGA-06-6693 TCGA-08-0509 
        3.58         1.08         2.73         4.54         0.49         0.56 
TCGA-08-0520 TCGA-08-0525 TCGA-12-0618 TCGA-12-0654 TCGA-12-3653 TCGA-12-5295 
       10.72        15.98         1.61         7.17        11.74        13.08 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0813 TCGA-14-0862 TCGA-14-0871 TCGA-19-1389 
        2.01        15.09         1.35         2.89        28.90         4.64 
TCGA-27-1832 TCGA-27-2521 TCGA-27-2524 TCGA-28-1750 TCGA-28-1755 TCGA-28-5204 
        9.86        10.39         7.59         8.32         1.51         3.91 
TCGA-32-1973 TCGA-32-1978 TCGA-32-1987 TCGA-32-2494 
       21.07        15.85        14.83        20.78 

$`16Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 
        9.14         4.73        18.35        23.18        35.41        20.71 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
       25.05         5.49        20.84        27.22        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
        0.23        51.29         8.81        57.76        16.93         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
       26.99        65.00        11.67        17.65        23.15        92.61 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.90        17.69        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        7.69        10.62         0.16        15.91        25.71         4.37 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        9.24        16.18        16.80        12.92        15.29        15.42 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        32.48        10.52        18.74        14.07        23.05 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       22.16        10.75         0.20         9.21         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        16.70         9.80         7.82        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       46.59        11.80        12.79         8.65         3.19         5.46 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         2.56        56.84        10.65         5.29 
TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
        3.12         0.23         2.20         2.73        51.32         1.97 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       53.98        19.00         2.53        40.37        37.02        26.33 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       28.47        14.93        10.29        18.28         4.67         7.04 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        2.60         0.39         6.44         5.46         3.88         4.96 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 
       11.84         0.20        22.49         0.33        18.02        10.32 
TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       11.80        14.96        10.29         5.52         0.26        70.52 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        4.67         8.05         0.16        12.33         3.22         4.47 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.63         2.04        23.57         9.37        22.29        19.53 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        5.36         2.70         0.92         9.17         8.91         6.71 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
        7.17        22.98         5.85         5.42        20.94         7.43 
TCGA-06-1086 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        6.35        26.79         8.65         7.86        13.58         4.18 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        0.76         4.90         9.27         2.83         8.52         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        6.81         5.98         4.37         0.43         9.37        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.52         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5856 TCGA-06-5858 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        6.71         3.75         6.12         3.91         7.76         5.36 
TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        1.45         7.36         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 
        4.77         4.96        22.68        34.75         3.91       108.82 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         4.34        13.78        10.39         7.59         3.39 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       53.79         1.28         6.41        15.06        22.52        14.70 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 
       35.64        19.50         0.95         9.17        10.85        15.72 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
        3.19        10.59         0.30         3.48        11.77         8.52 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 
       18.44        58.19         1.28         4.80         6.51        17.29 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 
        5.52        14.01        14.40        10.39         5.95        10.52 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 
       65.88         0.10        38.17        25.97        24.13         6.08 
TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 
        2.63        18.08        28.37        12.43        53.10        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
        5.49         9.11        14.83        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 
       18.48        10.62        23.51        27.78        38.76         8.91 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
       20.58       127.56         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       11.97        11.38        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
        3.39         9.44        25.28        13.61         6.38        59.41 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       43.20        25.78        11.54        10.95        11.77        34.52 
TCGA-12-5299 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
        3.22        11.97         0.95         6.18        23.05         2.24 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0817 TCGA-14-0865 TCGA-14-0866 
       11.24        13.74         3.25         5.39        16.50        26.33 
TCGA-14-0867 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
        2.04        15.95        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.02        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
       30.15         0.92        40.93         6.12        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        1.94        17.75        17.82         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 
       17.49         7.96         3.75         3.39         9.86        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 
       53.19         5.49         3.91         9.93        26.07        16.31 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
        4.27        29.00         0.82         9.90        13.35         3.65 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       18.28        13.97         6.41        11.77        21.86         8.61 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
       12.95        25.38         3.48         7.13        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        4.08        16.47         7.00         7.04         6.64        11.28 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.64         4.73         7.96         1.78         6.51 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
        5.39         5.29         5.42        10.03        13.87         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       31.33         7.10         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.84         1.22         1.58         7.92         2.30         4.80 
TCGA-27-1831 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
       16.57        18.25        33.14        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2526 TCGA-27-2527 
       11.51        24.72        10.39        16.08         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 
       15.75         0.20         2.53         9.17         7.59         8.45 
TCGA-28-1753 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
        1.18         2.83         0.13         0.66         6.74         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        7.30         5.26         9.04        15.55         2.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
        9.80        14.20         7.79        13.64         4.21         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1976 TCGA-32-1977 TCGA-32-1979 
       10.49         5.42        15.35         0.49         0.10        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2495 
        1.18         4.67        12.69        16.93        12.23        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.95         7.33         8.84         8.88         7.36        13.15 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.68        12.59        11.70        10.85         5.42         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44         6.02 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        11.54         7.73         3.45        17.52         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.46         4.77         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.14         2.53        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.32        20.94         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

      16Q LOSS CNV 16Q LOSS WILD-TYPE 
              0.49               0.07 
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
             99.95             127.56 
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
            10.025              9.440 
[1] "0.5 - 100.0 (10.0)" "0.1 - 127.6 (9.4)" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
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        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV"       "16Q LOSS CNV" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"16Q LOSS WILD-TYPE"       "16Q LOSS CNV" "16Q LOSS WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
      "16Q LOSS CNV" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"       "16Q LOSS CNV" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D68V2, continuous
D68V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS CNV         16   24
  16Q LOSS WILD-TYPE  202  310
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  FEMALE           16                202
  MALE             24                310
D68V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  16Q LOSS CNV                                   0                   1
  16Q LOSS WILD-TYPE                             8                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  16Q LOSS CNV                                    39
  16Q LOSS WILD-TYPE                             487
D68V5, multiclass
                                 clus
vv                                16Q LOSS CNV 16Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0                  8
  TREATED PRIMARY GBM                        1                 17
  UNTREATED PRIMARY (DE NOVO) GBM           39                487
D68V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS CNV         27   13
  16Q LOSS WILD-TYPE  354  158
     clus
vv    16Q LOSS CNV 16Q LOSS WILD-TYPE
  NO            27                354
  YES           13                158

Clustering(69) Variable = 17p loss
D69V1, survival
                    sevent
clus2                  0   1
  17P LOSS CNV        12  23
  17P LOSS WILD-TYPE 121 396
      17P LOSS CNV 17P LOSS WILD-TYPE 
                35                517 
      17P LOSS CNV 17P LOSS WILD-TYPE 
                23                396 
$`17P LOSS CNV`
TCGA-02-0033 TCGA-02-0051 TCGA-02-0055 TCGA-02-0059 TCGA-02-0069 TCGA-02-0079 
        2.83        15.06         2.50         9.57        28.70        27.22 
TCGA-02-0086 TCGA-02-0104 TCGA-06-0152 TCGA-06-0184 TCGA-06-0188 TCGA-06-2561 
        8.81        65.00        11.80        40.37        28.47         9.27 
TCGA-08-0245 TCGA-08-0353 TCGA-08-0386 TCGA-12-1098 TCGA-12-3653 TCGA-14-0871 
       34.75         6.41        15.72         3.98        11.74        28.90 
TCGA-14-1396 TCGA-14-1453 TCGA-15-1449 TCGA-16-0846 TCGA-19-0960 TCGA-19-2623 
        1.12         1.15         5.49         3.91         8.61         7.53 
TCGA-19-4065 TCGA-26-1442 TCGA-26-5133 TCGA-28-2509 TCGA-28-5215 TCGA-32-1976 
        7.04        31.33        14.86         4.77         7.79         0.49 
TCGA-41-2573 TCGA-41-3392 TCGA-76-4925 TCGA-76-6285 TCGA-76-6662 
        8.94         0.99         4.77         8.32         9.24 

$`17P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0034 
       53.06        42.74        24.59        10.36        90.58        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 
        3.19        12.59         6.54        19.86         8.35         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
       19.73        26.43        25.05         5.49        10.19        20.84 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 
       89.72        22.72         0.23        51.29        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
        3.48        26.99        11.67        17.65        23.15        92.61 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 
       99.95        15.65        48.95        16.54        16.90        17.69 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.86         7.69        10.62         0.16        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 
       10.55        47.11        11.34         9.24        16.18         3.35 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
       16.80        12.92        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 
       20.09        16.70         9.80         7.82        19.46        46.59 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.79         8.65         3.19         5.46         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        2.56        56.84        10.65         5.29        19.04         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       13.02         0.23         2.20         2.73        51.32         1.97 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0185 TCGA-06-0187 TCGA-06-0189 
       53.98        19.00         2.53        37.02        26.33        14.93 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.29        18.28         4.67         7.04         2.60         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 
        6.44         5.46         3.88         4.96        11.84         0.20 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
       12.43        22.49         0.33        18.02        10.32        11.80 
TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 
       14.96        10.29         5.52         0.26        70.52         4.67 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
        8.05         0.16        35.01        12.33         3.22         4.47 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.63         2.04        23.57         9.37        22.29        19.53 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        5.36         2.70         2.14         0.92         9.17         8.91 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        6.71         7.17        22.98         5.85         5.42        20.94 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
        7.43         6.35         3.58        26.79         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 
       13.58         4.18         1.08         0.76         4.90         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
        8.52         5.95         6.81         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        9.37        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         6.71         2.73         3.75         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
        4.96        22.68         3.91       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
        9.17        10.85         3.19        10.59         0.30         0.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
        3.48        11.77         8.52        18.44        58.19         1.28 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.72         4.80         6.51        15.98        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 
       14.01        14.40         1.61        10.39         5.95        10.52 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.10         5.49         9.11        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.76        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.91        20.58       127.56         5.82         6.21        30.54 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.63        11.97        11.38        15.85         9.11        14.53 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
        3.39         9.44        25.28        13.61         6.38        59.41 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       43.20        25.78        11.54        10.95        11.77        34.52 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 
       13.08         3.22         2.01        15.09        11.97         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 
        6.18        23.05         2.24        11.24        13.74         3.25 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 
        1.35         5.39         2.89        16.50        26.33         2.04 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1401 TCGA-14-1402 
       15.95        19.30         0.79         1.38         3.75        32.02 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 
       58.78        23.11         7.10        30.15         0.92        40.93 
TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 
        6.12        12.43         0.99         1.94        17.75        17.82 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.13        17.49         7.96         3.75 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 TCGA-16-0848 TCGA-16-0849 
        3.39         9.86        19.10        53.19         9.93        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       16.31         4.27        29.00         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        3.65        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
        0.43        14.27         3.39        10.75         9.07         5.95 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 
       12.95         4.64        25.38         3.48         7.13        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2624 
        3.25         0.13         9.67         4.87         1.08         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
        4.08        16.47         7.00         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
       18.64         4.73         7.96         1.78         6.51         5.39 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 
        5.29         5.42        10.03        13.87         9.73         7.10 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.37         9.40         5.49         8.84         1.22         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       10.39        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.75         0.20         2.53         9.17         8.32         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.45         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        6.74         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 
        2.53        11.77         9.80        14.20        13.64         4.21 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1977 
        8.52        10.49         5.42        15.35        21.07         0.10 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
       15.85        19.50         1.18         4.67        12.69        14.83 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 
       16.93        12.23        20.78        14.99        15.95         7.33 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 
        8.84         8.88         7.36        13.15         3.68        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2575 
       11.70        10.85         5.42         0.85        13.35         9.53 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44         6.02         0.20        11.54         7.73         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 
       17.52         4.31        14.33         8.22         7.46         4.54 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.09         3.65         9.14         2.53        10.78        16.67 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6286 TCGA-76-6656 
        3.29         2.70        11.38        17.06        20.94         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        5.03         0.23         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

      17P LOSS CNV 17P LOSS WILD-TYPE 
              0.49               0.07 
      17P LOSS CNV 17P LOSS WILD-TYPE 
             65.00             127.56 
      17P LOSS CNV 17P LOSS WILD-TYPE 
              8.81               9.80 
[1] "0.5 - 65.0 (8.8)"  "0.1 - 127.6 (9.8)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
      "17P LOSS CNV"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"       "17P LOSS CNV" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"17P LOSS WILD-TYPE"       "17P LOSS CNV" "17P LOSS WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
      "17P LOSS CNV" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS CNV         15   20
  17P LOSS WILD-TYPE  203  314
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  FEMALE           15                203
  MALE             20                314
D69V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  17P LOSS CNV                                   0                   0
  17P LOSS WILD-TYPE                             8                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  17P LOSS CNV                                    35
  17P LOSS WILD-TYPE                             491
D69V5, multiclass
                                 clus
vv                                17P LOSS CNV 17P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0                  8
  TREATED PRIMARY GBM                        0                 18
  UNTREATED PRIMARY (DE NOVO) GBM           35                491
D69V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS CNV         25   10
  17P LOSS WILD-TYPE  356  161
     clus
vv    17P LOSS CNV 17P LOSS WILD-TYPE
  NO            25                356
  YES           10                161

Clustering(70) Variable = 17q loss
D70V1, survival
                    sevent
clus2                  0   1
  17Q LOSS CNV         5  14
  17Q LOSS WILD-TYPE 128 405
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                19                533 
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                14                405 
$`17Q LOSS CNV`
TCGA-02-0033 TCGA-02-0051 TCGA-02-0055 TCGA-02-0059 TCGA-02-0079 TCGA-06-0152 
        2.83        15.06         2.50         9.57        27.22        11.80 
TCGA-06-0184 TCGA-08-0353 TCGA-08-0386 TCGA-12-1098 TCGA-12-3653 TCGA-14-0871 
       40.37         6.41        15.72         3.98        11.74        28.90 
TCGA-14-1453 TCGA-15-1447 TCGA-19-2623 TCGA-19-4065 TCGA-28-2509 TCGA-41-3392 
        1.15        53.19         7.53         7.04         4.77         0.99 
TCGA-76-6285 
        8.32 

$`17Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0034 
       53.06        42.74        24.59        10.36        90.58        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 
        3.19        12.59         6.54        19.86         8.35         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 
       19.73        26.43        28.70        25.05         5.49        10.19 
TCGA-02-0075 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
       20.84        89.72        22.72         0.23        51.29         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 
       57.76        16.93         3.48        26.99        65.00        11.67 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
       17.65        23.15        92.61        99.95        15.65        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
       16.54        16.90        17.69        10.75        14.47         3.98 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
       13.87        14.20        15.95        12.23         9.86         7.69 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
       10.62         0.16        15.91        25.71         4.37        25.12 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 
       10.59        12.39        14.50        10.55        47.11        11.34 
TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
        9.24        16.18         3.35        16.80        12.92        15.29 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
       15.42        16.18         2.70         0.26         4.04        47.31 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
        0.10         3.55        22.72        32.48        10.52        18.74 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       14.07        23.05        22.16        10.75         0.20         9.21 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 
        2.20        11.74         2.33        20.09        16.70         9.80 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        7.82        19.46        46.59        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
        5.46         9.44        11.80         2.56        56.84        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.29        19.04         3.12        13.02         0.23         2.20 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        2.73        51.32         1.97        53.98        19.00         2.53 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       37.02        26.33        28.47        14.93        10.29        18.28 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.04         2.60         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        3.88         4.96        11.84         0.20        12.43        22.49 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 
        0.33        18.02        10.32        11.80        14.96        10.29 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
        5.52         0.26        70.52         4.67         8.05         0.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.01        12.33         3.22         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57         9.37        22.29        19.53         5.36         2.70 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.14         0.92         9.17         8.91         6.71         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       22.98         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        3.58        26.79         8.65         7.86        13.58         4.18 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08         0.76         4.90         9.27         2.83         8.52 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95         6.81         5.98         4.37         0.43         9.37 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.21         3.52         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         6.71         2.73         3.75         6.12         4.54 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        3.91         7.76         5.36         1.45         0.49         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.28        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
       22.68        34.75         3.91       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
        9.17        10.85         3.19        10.59         0.30         0.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
        3.48        11.77         8.52        18.44        58.19         1.28 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.72         4.80         6.51        15.98        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 
       14.01        14.40         1.61        10.39         5.95        10.52 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.10         5.49         9.11        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.76        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.91        20.58       127.56         5.82         6.21        30.54 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.63        11.97        11.38        15.85         9.11        14.53 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
        3.39         9.44        25.28        13.61         6.38        59.41 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       43.20        25.78        11.54        10.95        11.77        34.52 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 
       13.08         3.22         2.01        15.09        11.97         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 
        6.18        23.05         2.24        11.24        13.74         3.25 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 
        1.35         5.39         2.89        16.50        26.33         2.04 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 
       32.02        58.78        23.11         7.10        30.15         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
       40.93         6.12        12.43         0.99         1.94        17.75 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.82         7.63         5.88         7.13        17.49         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 
        3.75         3.39         9.86        19.10         5.49         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        9.93        26.07        16.31         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
       10.75         9.07         5.95        12.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.48         7.13        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        4.87         1.08         0.16         4.08        16.47         7.00 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        11.28         8.02        18.64         4.73         7.96 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 
        1.78         6.51         5.39         5.29         5.42        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       13.87         9.73        31.33         7.10         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.18         1.51         2.83         0.13         0.66         6.74 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26         3.91         9.04        15.55         2.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77         9.80        14.20         7.79        13.64         4.21 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        8.52        10.49         5.42        15.35        21.07         0.49 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
       14.83        16.93        12.23        20.78        14.99        15.95 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 
        7.33         8.84         8.88         7.36        13.15         3.68 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        11.70        10.85         5.42         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        8.94         9.53         4.44         6.02         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        7.73         3.45        17.52         4.31        14.33         8.22 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        7.46         4.77         4.54         3.09         3.65         9.14 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        10.78        16.67         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
       17.06        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

      17Q LOSS CNV 17Q LOSS WILD-TYPE 
              0.99               0.07 
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
             53.19             127.56 
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
              8.32               9.63 
[1] "1.0 - 53.2 (8.3)"  "0.1 - 127.6 (9.6)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"       "17Q LOSS CNV" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
      "17Q LOSS CNV" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"17Q LOSS WILD-TYPE"       "17Q LOSS CNV" "17Q LOSS WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D70V2, continuous
D70V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS CNV          8   11
  17Q LOSS WILD-TYPE  210  323
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  FEMALE            8                210
  MALE             11                323
D70V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  17Q LOSS CNV                                   0                   0
  17Q LOSS WILD-TYPE                             8                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  17Q LOSS CNV                                    19
  17Q LOSS WILD-TYPE                             507
D70V5, multiclass
                                 clus
vv                                17Q LOSS CNV 17Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0                  8
  TREATED PRIMARY GBM                        0                 18
  UNTREATED PRIMARY (DE NOVO) GBM           19                507
D70V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS CNV         12    7
  17Q LOSS WILD-TYPE  369  164
     clus
vv    17Q LOSS CNV 17Q LOSS WILD-TYPE
  NO            12                369
  YES            7                164

Clustering(71) Variable = 18p loss
D71V1, survival
                    sevent
clus2                  0   1
  18P LOSS CNV        13  31
  18P LOSS WILD-TYPE 120 388
      18P LOSS CNV 18P LOSS WILD-TYPE 
                44                508 
      18P LOSS CNV 18P LOSS WILD-TYPE 
                31                388 
$`18P LOSS CNV`
TCGA-02-0006 TCGA-02-0010 TCGA-02-0011 TCGA-02-0034 TCGA-02-0079 TCGA-02-0106 
       18.35        35.41        20.71        14.14        27.22        11.67 
TCGA-02-0111 TCGA-02-2470 TCGA-06-0151 TCGA-06-0171 TCGA-06-0213 TCGA-06-0237 
       23.15        12.92        46.59        13.02         0.20        10.32 
TCGA-06-0876 TCGA-06-1086 TCGA-06-5408 TCGA-06-5859 TCGA-06-6694 TCGA-06-6695 
        8.91         6.35        11.21         4.54         7.36         8.28 
TCGA-08-0245 TCGA-08-0525 TCGA-12-0776 TCGA-12-1088 TCGA-14-1453 TCGA-14-4157 
       34.75        15.98         9.11       127.56         1.15         3.39 
TCGA-16-0850 TCGA-19-1390 TCGA-19-4065 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 
       16.31        25.38         7.04         5.42        10.03        13.87 
TCGA-26-5133 TCGA-28-1750 TCGA-28-5213 TCGA-28-5216 TCGA-32-1976 TCGA-32-2491 
       14.86         8.32         9.80        13.64         0.49        12.23 
TCGA-32-2634 TCGA-32-4210 TCGA-74-6575 TCGA-76-4925 TCGA-76-4929 TCGA-76-6191 
        8.88         3.68        17.52         4.77         3.65        16.67 
TCGA-76-6285 TCGA-76-6286 
        8.32        20.94 

$`18P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0007 TCGA-02-0009 TCGA-02-0014 TCGA-02-0015 
        9.14         4.73        23.18        10.59        82.55        20.61 
TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 
       55.86        77.62        20.12        53.06        42.74        24.59 
TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 
       10.36        90.58         2.83         3.58        10.72        10.52 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 
       18.28         6.84        14.70         3.19        15.06        12.59 
TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 
        6.54         2.50        19.86         8.35         9.57         6.02 
TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 
       19.73        26.43        28.70        25.05         5.49        10.19 
TCGA-02-0075 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
       20.84        89.72        22.72         0.23        51.29         8.81 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 
       57.76        16.93         3.48        26.99        65.00        17.65 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 
        3.35        16.80        15.29        15.42        16.18         2.70 
TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 
        0.26         4.04        47.31         0.10         3.55        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 
       32.48        10.52        18.74        14.07        23.05        22.16 
TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 
       10.75         0.20         9.21         2.20        11.74         2.33 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 
       20.09        16.70         9.80         7.82        19.46        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.79         8.65         3.19         5.46         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        2.56        56.84        10.65         5.29        19.04         3.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
        0.23         2.20         2.73        51.32         1.97        53.98 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
       19.00         2.53        40.37        37.02        26.33        28.47 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       14.93        10.29        18.28         4.67         7.04         2.60 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 
        0.39         6.44         5.46         3.88         4.96        11.84 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0241 
       12.43        22.49         0.33        18.02        11.80        14.96 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
       10.29         5.52         0.26        70.52         4.67         8.05 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        0.16        35.01        12.33         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.04        23.57         9.37        22.29        19.53         5.36 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0877 TCGA-06-0878 
        2.70         2.14         0.92         9.17         6.71         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 
       22.98         5.85         5.42        20.94         7.43         3.58 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
       26.79         8.65         7.86        13.58         4.18         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        0.76         4.90         9.27         2.83         8.52         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5410 
        6.81         5.98         4.37         0.43         9.37         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        2.73         3.75         6.12         3.91         7.76         5.36 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        1.45         0.49        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
        4.96        22.68         3.91       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        6.41        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 
        0.95         9.17        10.85        15.72         3.19        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 
        0.30         0.56         3.48        11.77         8.52        18.44 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 
       58.19         1.28        10.72         4.80         6.51        17.29 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
        5.52        14.01        14.40         1.61        10.39         5.95 
TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
       10.52         7.17        65.88         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       24.13         6.08         2.63        18.08        28.37        12.43 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       53.10        43.10         5.49        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.76        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 
        8.91        20.58         5.82         6.21        30.54        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       11.97        11.38        15.85         9.11        14.53         3.98 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
        3.39         9.44        25.28        13.61         6.38        59.41 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       43.20        25.78        11.54        10.95        11.77        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 
       11.74        13.08         3.22         2.01        15.09        11.97 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.18        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        3.25         1.35         5.39         2.89        16.50        26.33 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
        2.04        28.90        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.02        58.78        23.11         7.10 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
       30.15         0.92        40.93         6.12        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        1.94        17.75        17.82         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 
       17.49         7.96         3.75         9.86        19.10        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 TCGA-16-1045 
        5.49         3.91         9.93        26.07         4.27        29.00 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        0.82         9.90        13.35         3.65        18.28        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
        6.41        11.77        21.86         8.61         0.43        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 
        3.39        10.75         9.07         5.95        12.95         4.64 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.48         7.13        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        16.47 
TCGA-19-2631 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.00         6.64        11.28         8.02        18.64         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-26-1440 
        7.96         1.78         6.51         5.39         5.29         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 
       31.33         7.10         9.37         9.40         5.49         8.84 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        1.22         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        18.25        33.14        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.72        10.39        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
        2.86        14.40        15.75         0.20         2.53         9.17 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.59         8.45         1.18         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        0.66         6.74         4.77         7.30         5.26         3.91 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5214 TCGA-28-5215 
        9.04        15.55         2.53        11.77        14.20         7.79 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        4.21         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
        0.10        15.85        19.50         1.18         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 
       14.83        16.93        20.78        14.99        15.95         7.33 
TCGA-32-2632 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
        8.84         7.36        13.15        12.59        11.70        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
        5.42         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44         6.02         0.20        11.54         7.73         3.45 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 
        4.31        14.33         8.22         7.46         4.54         3.09 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        9.14         2.53        10.78         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
       17.06         4.83         5.03         0.23         9.24         7.69 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.76         1.61        17.69         0.07 

      18P LOSS CNV 18P LOSS WILD-TYPE 
              0.20               0.07 
      18P LOSS CNV 18P LOSS WILD-TYPE 
            127.56             108.82 
      18P LOSS CNV 18P LOSS WILD-TYPE 
            11.440              9.385 
[1] "0.2 - 127.6 (11.4)" "0.1 - 108.8 (9.4)" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
      "18P LOSS CNV"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
      "18P LOSS CNV"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
      "18P LOSS CNV"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
      "18P LOSS CNV" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"18P LOSS WILD-TYPE"       "18P LOSS CNV" "18P LOSS WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"       "18P LOSS CNV" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"18P LOSS WILD-TYPE"       "18P LOSS CNV"       "18P LOSS CNV" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS CNV         17   27
  18P LOSS WILD-TYPE  201  307
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  FEMALE           17                201
  MALE             27                307
D71V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  18P LOSS CNV                                   1                   2
  18P LOSS WILD-TYPE                             7                  16
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  18P LOSS CNV                                    41
  18P LOSS WILD-TYPE                             485
D71V5, multiclass
                                 clus
vv                                18P LOSS CNV 18P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              1                  7
  TREATED PRIMARY GBM                        2                 16
  UNTREATED PRIMARY (DE NOVO) GBM           41                485
D71V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS CNV         33   11
  18P LOSS WILD-TYPE  348  160
     clus
vv    18P LOSS CNV 18P LOSS WILD-TYPE
  NO            33                348
  YES           11                160

Clustering(72) Variable = 18q loss
D72V1, survival
                    sevent
clus2                  0   1
  18Q LOSS CNV        11  28
  18Q LOSS WILD-TYPE 122 391
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
                39                513 
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
                28                391 
$`18Q LOSS CNV`
TCGA-02-0006 TCGA-02-0011 TCGA-02-0079 TCGA-02-0111 TCGA-06-0151 TCGA-06-0213 
       18.35        20.71        27.22        23.15        46.59         0.20 
TCGA-06-0237 TCGA-06-0749 TCGA-06-0876 TCGA-06-1086 TCGA-06-5859 TCGA-06-6694 
       10.32         2.14         8.91         6.35         4.54         7.36 
TCGA-08-0245 TCGA-08-0359 TCGA-08-0525 TCGA-12-0776 TCGA-12-0826 TCGA-12-1088 
       34.75         0.95        15.98         9.11        27.78       127.56 
TCGA-19-0962 TCGA-19-1390 TCGA-19-2619 TCGA-19-4065 TCGA-19-5960 TCGA-26-1438 
        0.43        25.38         9.67         7.04         5.42        10.03 
TCGA-26-1439 TCGA-26-5133 TCGA-27-1838 TCGA-28-1750 TCGA-28-5213 TCGA-28-5216 
       13.87        14.86        11.51         8.32         9.80        13.64 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1987 TCGA-32-2491 TCGA-32-2634 TCGA-32-4210 
       21.07         0.49        14.83        12.23         8.88         3.68 
TCGA-76-4925 TCGA-76-6285 TCGA-76-6286 
        4.77         8.32        20.94 

$`18Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 TCGA-02-0014 
        9.14         4.73        23.18        10.59        35.41        82.55 
TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 
       20.61        55.86        77.62        20.12        53.06        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
       15.06        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        9.57         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
        5.49        10.19        20.84        89.72        22.72         0.23 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.29         8.81        57.76        16.93         3.48        26.99 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 
       65.00        11.67        17.65        92.61        99.95        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 
       48.95        16.54        16.90        17.69        10.75        14.47 
TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 
        3.98        13.87        14.20        15.95        12.23         9.86 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 
        7.69        10.62         0.16        15.91        25.71         4.37 
TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 
       25.12        10.59        12.39        14.50        10.55        47.11 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
       11.34         9.24        16.18         3.35        16.80        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.29        15.42        16.18         2.70         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.31         0.10         3.55        22.72        32.48        10.52 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       18.74        14.07        23.05        22.16        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
        9.21         2.20        11.74         2.33        20.09        16.70 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        9.80         7.82        19.46        11.80        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 
        3.19         5.46         9.44        11.80         2.56        56.84 
TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
       10.65         5.29        19.04         3.12        13.02         0.23 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
        2.20         2.73        51.32         1.97        53.98        19.00 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
        2.53        40.37        37.02        26.33        28.47        14.93 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
       10.29        18.28         4.67         7.04         2.60         0.39 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0214 
        6.44         5.46         3.88         4.96        11.84        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 
       22.49         0.33        18.02        11.80        14.96        10.29 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
        5.52         0.26        70.52         4.67         8.05         0.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.01        12.33         3.22         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
       23.57         9.37        22.29        19.53         5.36         2.70 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        0.92         9.17         6.71         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
        5.42        20.94         7.43         3.58        26.79         8.65 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        7.86        13.58         4.18         1.08         0.76         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        9.27         2.83         8.52         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43         9.37        11.21         3.52         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 
        4.54         8.81         8.98         8.55         6.71         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        3.75         6.12         3.91         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        0.49         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
        4.96        22.68         3.91       108.82         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
       13.78        10.39         7.59         3.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
        6.41        15.06        22.52        14.70        35.64        19.50 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        9.17        10.85        15.72         3.19        10.59         0.30 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
        0.56         3.48        11.77         8.52        18.44        58.19 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0529 TCGA-08-0531 
        1.28        10.72         4.80         6.51        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 
       14.01        14.40         1.61        10.39         5.95        10.52 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 
       43.10         5.49        14.83        14.27        91.73        24.76 
TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       18.48        10.62        23.51        38.76         8.91        20.58 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         6.21        30.54        21.63        11.97        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 
       15.85         9.11        14.53         3.98         3.39         9.44 
TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 
       25.28        13.61         6.38        59.41        43.20        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       11.54        10.95        11.77        34.52        11.74        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.01        15.09        11.97         0.95         6.18 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.74         3.25         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
        5.39         2.89        16.50        26.33         2.04        28.90 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.02        58.78        23.11         7.10         1.15        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.93         6.12        12.43         0.99         1.94 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.75        17.82         7.63         5.88         7.13        17.49 
TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 
        7.96         3.75         3.39         9.86        19.10        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 
        5.49         3.91         9.93        26.07        16.31         4.27 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.00         0.82         9.90        13.35         3.65        18.28 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0963 
       13.97         6.41        11.77        21.86         8.61        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 
        3.39        10.75         9.07         5.95        12.95         4.64 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2620 
        3.48         7.13        12.66         3.25         0.13         4.87 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        1.08         7.53         0.16         4.08        16.47         7.00 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        11.28         8.02        18.64         4.73         7.96 
TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-26-1440 TCGA-26-1442 
        1.78         6.51         5.39         5.29         9.73        31.33 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        7.10         9.37         9.40         5.49         8.84         1.22 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.30         4.80        16.57         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-2518 
       18.25        33.14        21.30        30.05        14.04        24.72 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       10.39        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 
       15.75         0.20         2.53         9.17         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.18         1.51         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5219 
        2.53        11.77        14.20         7.79         4.21         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
       10.49         5.42        15.35         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 
        1.18         4.67        12.69        16.93        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2638 TCGA-32-4208 TCGA-32-4211 
       15.95         7.33         8.84         7.36        13.15        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       11.70        10.85         5.42         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44         6.02         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 
        7.73         3.45        17.52         4.31        14.33         8.22 
TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 
        7.46         4.54         3.09         3.65         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03         0.23         9.24         7.69         7.76 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.69         0.07 

      18Q LOSS CNV 18Q LOSS WILD-TYPE 
              0.20               0.07 
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
            127.56             108.82 
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
             10.03               9.44 
[1] "0.2 - 127.6 (10.0)" "0.1 - 108.8 (9.4)" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
      "18Q LOSS CNV" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"       "18Q LOSS CNV" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV" "18Q LOSS WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"18Q LOSS WILD-TYPE"       "18Q LOSS CNV"       "18Q LOSS CNV" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D72V2, continuous
D72V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS CNV         18   21
  18Q LOSS WILD-TYPE  200  313
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  FEMALE           18                200
  MALE             21                313
D72V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  18Q LOSS CNV                                   1                   0
  18Q LOSS WILD-TYPE                             7                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  18Q LOSS CNV                                    38
  18Q LOSS WILD-TYPE                             488
D72V5, multiclass
                                 clus
vv                                18Q LOSS CNV 18Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              1                  7
  TREATED PRIMARY GBM                        0                 18
  UNTREATED PRIMARY (DE NOVO) GBM           38                488
D72V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS CNV         26   13
  18Q LOSS WILD-TYPE  355  158
     clus
vv    18Q LOSS CNV 18Q LOSS WILD-TYPE
  NO            26                355
  YES           13                158

Clustering(73) Variable = 19p loss
D73V1, survival
                    sevent
clus2                  0   1
  19P LOSS CNV         4   9
  19P LOSS WILD-TYPE 129 410
      19P LOSS CNV 19P LOSS WILD-TYPE 
                13                539 
      19P LOSS CNV 19P LOSS WILD-TYPE 
                 9                410 
$`19P LOSS CNV`
TCGA-06-0875 TCGA-08-0344 TCGA-08-0349 TCGA-12-1095 TCGA-14-0740 TCGA-14-0865 
        9.17       108.82         7.59        15.85        11.97        16.50 
TCGA-14-3477 TCGA-16-0850 TCGA-26-5136 TCGA-27-2519 TCGA-32-4210 TCGA-76-4925 
        3.75        16.31         1.22        10.39         3.68         4.77 
TCGA-76-4929 
        3.65 

$`19P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.70         3.19        15.06        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       28.70        25.05         5.49        10.19        20.84        27.22 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       89.72        22.72         0.23        51.29         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.93         3.48        26.99        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       23.15        92.61        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.90        17.69        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.86         7.69        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        0.16        15.91        25.71         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.24 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
       16.18         3.35        16.80        12.92        15.29        15.42 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       16.18         2.70         0.26         4.04        47.31         0.10 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        3.55        22.72        32.48        10.52        18.74        14.07 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       23.05        22.16        10.75         0.20         9.21         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        16.70         9.80         7.82 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 
        5.46         9.44        11.80         2.56        56.84        10.65 
TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        5.29        19.04         3.12        13.02         0.23         2.20 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 
        2.73        51.32         1.97        53.98        19.00         2.53 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 
       40.37        37.02        26.33        28.47        14.93        10.29 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 
       18.28         4.67         7.04         2.60         0.39         6.44 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        5.46         3.88         4.96        11.84         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 
       22.49         0.33        18.02        10.32        11.80        14.96 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
       10.29         5.52         0.26        70.52         4.67         8.05 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
        0.16        35.01        12.33         3.22         4.47         9.63 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.04        23.57         9.37        22.29        19.53         5.36 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
        2.70         2.14         0.92         8.91         6.71         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
       22.98         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
        3.58        26.79         8.65         7.86        13.58         4.18 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08         0.76         4.90         9.27         2.83         8.52 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
        5.95         6.81         5.98         4.37         0.43         9.37 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
       11.21         3.52         8.35         4.54         8.81         8.98 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        8.55         6.71         2.73         3.75         6.12         4.54 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        3.91         7.76         5.36         1.45         0.49         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.28        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
       22.68        34.75         3.91         1.74         4.34        13.78 
TCGA-08-0348 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
       10.39         3.39        53.79         1.28         6.41        15.06 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       22.52        14.70        35.64        19.50         0.95         9.17 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       10.85        15.72         3.19        10.59         0.30         0.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
        3.48        11.77         8.52        18.44        58.19         1.28 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.72         4.80         6.51        15.98        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 
       14.01        14.40         1.61        10.39         5.95        10.52 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.10         5.49         9.11        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.76        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.91        20.58       127.56         5.82         6.21        30.54 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 
       21.63        11.97        11.38         9.11        14.53         3.98 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
        3.39         9.44        25.28        13.61         6.38        59.41 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
       43.20        25.78        11.54        10.95        11.77        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 
       11.74        13.08         3.22         2.01        15.09         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 
        6.18        23.05         2.24        11.24        13.74         3.25 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
        1.35         5.39         2.89        26.33         2.04        28.90 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.02        58.78        23.11         7.10         1.15        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.93         6.12        12.43         0.99         1.94 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.75        17.82         7.63         5.88         7.13        17.49 
TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 
        7.96         3.39         9.86        19.10        53.19         5.49 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
        3.91         9.93        26.07         4.27        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
        9.90        13.35         3.65        18.28        13.97         6.41 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
       11.77        21.86         8.61         0.43        14.27         3.39 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
       10.75         9.07         5.95        12.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.48         7.13        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        16.47 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73         7.96         1.78         6.51         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
        5.42        10.03        13.87         9.73        31.33         7.10 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5139 
        9.37         9.40        14.86         5.49         8.84         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.18         1.51         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77         9.80        14.20         7.79        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        4.21         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.95         7.33         8.84         8.88         7.36        13.15 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        11.70        10.85         5.42         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44         6.02         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        17.52         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-4934 
        8.22         7.46         4.54         3.09         9.14         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

      19P LOSS CNV 19P LOSS WILD-TYPE 
              1.22               0.07 
      19P LOSS CNV 19P LOSS WILD-TYPE 
            108.82             127.56 
      19P LOSS CNV 19P LOSS WILD-TYPE 
              9.17               9.57 
[1] "1.2 - 108.8 (9.2)" "0.1 - 127.6 (9.6)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"       "19P LOSS CNV" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
      "19P LOSS CNV" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"19P LOSS WILD-TYPE"       "19P LOSS CNV" "19P LOSS WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D73V2, continuous
D73V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS CNV          6    7
  19P LOSS WILD-TYPE  212  327
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  FEMALE            6                212
  MALE              7                327
D73V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  19P LOSS CNV                                   0                   0
  19P LOSS WILD-TYPE                             8                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  19P LOSS CNV                                    13
  19P LOSS WILD-TYPE                             513
D73V5, multiclass
                                 clus
vv                                19P LOSS CNV 19P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0                  8
  TREATED PRIMARY GBM                        0                 18
  UNTREATED PRIMARY (DE NOVO) GBM           13                513
D73V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS CNV         10    3
  19P LOSS WILD-TYPE  371  168
     clus
vv    19P LOSS CNV 19P LOSS WILD-TYPE
  NO            10                371
  YES            3                168

Clustering(74) Variable = 19q loss
D74V1, survival
                    sevent
clus2                  0   1
  19Q LOSS CNV         4  14
  19Q LOSS WILD-TYPE 129 405
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
                18                534 
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
                14                405 
$`19Q LOSS CNV`
TCGA-02-0028 TCGA-02-0258 TCGA-02-0432 TCGA-02-2466 TCGA-06-0875 TCGA-06-2561 
       90.58        16.54        47.11        16.80         9.17         9.27 
TCGA-08-0344 TCGA-08-0349 TCGA-12-1095 TCGA-14-0740 TCGA-14-0865 TCGA-16-0850 
      108.82         7.59        15.85        11.97        16.50        16.31 
TCGA-26-5136 TCGA-27-2519 TCGA-32-2491 TCGA-32-4210 TCGA-76-4925 TCGA-76-4929 
        1.22        10.39        12.23         3.68         4.77         3.65 

$`19Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 
       53.06        42.74        24.59        10.36         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
        3.19        15.06        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 TCGA-02-0266 
       92.61        99.95        15.65        48.95        16.90        17.69 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 
       10.75        14.47         3.98        13.87        14.20        15.95 
TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 
       12.23         9.86         7.69        10.62         0.16        15.91 
TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 
       25.71         4.37        25.12        10.59        12.39        14.50 
TCGA-02-0430 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2470 
       10.55        11.34         9.24        16.18         3.35        12.92 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       15.29        15.42        16.18         2.70         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       47.31         0.10         3.55        22.72        32.48        10.52 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
       18.74        14.07        23.05        22.16        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
        9.21         2.20        11.74         2.33        20.09        16.70 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
        9.80         7.82        19.46        46.59        11.80        12.79 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
        8.65         3.19         5.46         9.44        11.80         2.56 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 
       56.84        10.65         5.29        19.04         3.12        13.02 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 
        0.23         2.20         2.73        51.32         1.97        53.98 
TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 
       19.00         2.53        40.37        37.02        26.33        28.47 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 
       14.93        10.29        18.28         4.67         7.04         2.60 
TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 
        0.39         6.44         5.46         3.88         4.96        11.84 
TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 
        0.20        12.43        22.49         0.33        18.02        10.32 
TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 
       11.80        14.96        10.29         5.52         0.26        70.52 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 
        4.67         8.05         0.16        35.01        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        4.47         9.63         2.04        23.57         9.37        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 
       19.53         5.36         2.70         2.14         0.92         8.91 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        6.71         7.17        22.98         5.85         5.42        20.94 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 
        7.43         6.35         3.58        26.79         8.65         7.86 
TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 
       13.58         4.18         1.08         0.76         4.90         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
        8.52         5.95         6.81         5.98         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
        9.37        11.21         3.52         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         6.71         2.73         3.75         6.12 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        4.54         3.91         7.76         5.36         1.45         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.28        12.85         4.77         1.55         4.77 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 
        4.96        22.68        34.75         3.91         1.74         4.34 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
       13.78        10.39         3.39        53.79         1.28         6.41 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 
        9.17        10.85        15.72         3.19        10.59         0.30 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
        0.56         3.48        11.77         8.52        18.44        58.19 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
        1.28        10.72         4.80         6.51        15.98        17.29 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
        5.52        14.01        14.40         1.61        10.39         5.95 
TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
       10.52         7.17        65.88         0.10        38.17        25.97 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
       24.13         6.08         2.63        18.08        28.37        12.43 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
       53.10        43.10         5.49         9.11        14.83        14.27 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
       91.73        24.76        18.48        10.62        23.51        27.78 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
       38.76         8.91        20.58       127.56         5.82         6.21 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1096 TCGA-12-1097 
       30.54        21.63        11.97        11.38         9.11        14.53 
TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
        3.98         3.39         9.44        25.28        13.61         6.38 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.41        43.20        25.78        11.54        10.95        11.77 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       34.52        11.74        13.08         3.22         2.01        15.09 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.18        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0866 TCGA-14-0867 
        3.25         1.35         5.39         2.89        26.33         2.04 
TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 
       28.90        15.95        19.30         0.79         1.38         1.12 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 
        3.75        32.02        58.78        23.11         7.10         1.15 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 
       30.15         0.92        40.93         6.12        12.43         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 
        1.94        17.75        17.82         7.63         5.88         7.13 
TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 
       17.49         7.96         3.75         3.39         9.86        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 
       53.19         5.49         3.91         9.93        26.07         4.27 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.00         0.82         9.90        13.35         3.65        18.28 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 
       13.97         6.41        11.77        21.86         8.61         0.43 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 
       14.27         3.39        10.75         9.07         5.95        12.95 
TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 
        4.64        25.38         3.48         7.13        12.66         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
        0.13         9.67         4.87         1.08         7.53         0.16 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        4.08        16.47         7.00         7.04         6.64        11.28 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.64         4.73         7.96         1.78         6.51 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
        5.39         5.29         5.42        10.03        13.87         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       31.33         7.10         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        8.84         1.58         7.92         2.30         4.80        16.57 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        18.25        33.14        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       11.51        24.72        10.39        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
       14.40        15.75         0.20         2.53         9.17         8.32 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
        7.59         8.45         1.18         1.51         2.83         0.13 
TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        0.66         6.74         4.77         7.30         5.26         3.91 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
        9.04        15.55         2.53        11.77         9.80        14.20 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
        7.79        13.64         4.21         8.52        10.49         5.42 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 
       15.35        21.07         0.49         0.10        15.85        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2494 
        1.18         4.67        12.69        14.83        16.93        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 
       14.99        15.95         7.33         8.84         8.88         7.36 
TCGA-32-4208 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
       13.15        12.59        11.70        10.85         5.42         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44         6.02 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        11.54         7.73         3.45        17.52         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 
       14.33         8.22         7.46         4.54         3.09         9.14 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        10.78        16.67         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.32        20.94         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.24         7.69         7.76         1.61        17.69         0.07 

      19Q LOSS CNV 19Q LOSS WILD-TYPE 
              1.22               0.07 
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
            108.82             127.56 
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
             12.10               9.44 
[1] "1.2 - 108.8 (12.1)" "0.1 - 127.6 (9.4)" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"       "19Q LOSS CNV" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
      "19Q LOSS CNV" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"19Q LOSS WILD-TYPE"       "19Q LOSS CNV" "19Q LOSS WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D74V2, continuous
D74V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS CNV          7   11
  19Q LOSS WILD-TYPE  211  323
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  FEMALE            7                211
  MALE             11                323
D74V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  19Q LOSS CNV                                   0                   2
  19Q LOSS WILD-TYPE                             8                  16
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  19Q LOSS CNV                                    16
  19Q LOSS WILD-TYPE                             510
D74V5, multiclass
                                 clus
vv                                19Q LOSS CNV 19Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0                  8
  TREATED PRIMARY GBM                        2                 16
  UNTREATED PRIMARY (DE NOVO) GBM           16                510
D74V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS CNV         14    4
  19Q LOSS WILD-TYPE  367  167
     clus
vv    19Q LOSS CNV 19Q LOSS WILD-TYPE
  NO            14                367
  YES            4                167

Clustering(75) Variable = 20p loss
D75V1, survival
                    sevent
clus2                  0   1
  20P LOSS CNV         2   9
  20P LOSS WILD-TYPE 131 410
      20P LOSS CNV 20P LOSS WILD-TYPE 
                11                541 
      20P LOSS CNV 20P LOSS WILD-TYPE 
                 9                410 
$`20P LOSS CNV`
TCGA-02-0011 TCGA-02-0051 TCGA-02-0060 TCGA-06-0414 TCGA-08-0245 TCGA-14-0867 
       20.71        15.06         6.02        35.01        34.75         2.04 
TCGA-14-3477 TCGA-19-1390 TCGA-19-2629 TCGA-28-1750 TCGA-76-6286 
        3.75        25.38        16.47         8.32        20.94 

$`20P LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 
       82.55        20.61        55.86        77.62        20.12        53.06 
TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 
       42.74        24.59        10.36        90.58         2.83        14.14 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 
        3.58        10.72        10.52        18.28         6.84        14.70 
TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
        3.19        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 
        9.57        19.73        26.43        28.70        25.05         5.49 
TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 
       10.19        20.84        27.22        89.72        22.72         0.23 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 
       51.29         8.81        57.76        16.93         3.48        26.99 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 
       65.00        11.67        17.65        23.15        92.61        99.95 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.90        17.69        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 
        9.86         7.69        10.62         0.16        15.91        25.71 
TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 
        4.37        25.12        10.59        12.39        14.50        10.55 
TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 
       47.11        11.34         9.24        16.18         3.35        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 
       12.92        15.29        15.42        16.18         2.70         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 
        4.04        47.31         0.10         3.55        22.72        32.48 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 
       10.52        18.74        14.07        23.05        22.16        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 
        0.20         9.21         2.20        11.74         2.33        20.09 
TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 
       16.70         9.80         7.82        19.46        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
       12.79         8.65         3.19         5.46         9.44        11.80 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 
        2.56        56.84        10.65         5.29        19.04         3.12 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 
       13.02         0.23         2.20         2.73        51.32         1.97 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
       53.98        19.00         2.53        40.37        37.02        26.33 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 
       28.47        14.93        10.29        18.28         4.67         7.04 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 
        2.60         0.39         6.44         5.46         3.88         4.96 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 
       11.84         0.20        12.43        22.49         0.33        18.02 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
       10.32        11.80        14.96        10.29         5.52         0.26 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 
       70.52         4.67         8.05         0.16        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        4.47         9.63         2.04        23.57         9.37        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.53         5.36         2.70         2.14         0.92         9.17 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
        8.91         6.71         7.17        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 
       20.94         7.43         6.35         3.58        26.79         8.65 
TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        7.86        13.58         4.18         1.08         0.76         4.90 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        9.27         2.83         8.52         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43         9.37        11.21         3.52         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 
        4.54         8.81         8.98         8.55         6.71         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        3.75         6.12         4.54         3.91         7.76         5.36 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        1.45         0.49         7.36         8.28        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0246 TCGA-08-0344 
        1.55         4.77         4.96        22.68         3.91       108.82 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         4.34        13.78        10.39         7.59         3.39 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       53.79         1.28         6.41        15.06        22.52        14.70 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 
       35.64        19.50         0.95         9.17        10.85        15.72 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 
        3.19        10.59         0.30         0.56         3.48        11.77 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
        8.52        18.44        58.19         1.28        10.72         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 
        6.51        15.98        17.29         5.52        14.01        14.40 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 
        1.61        10.39         5.95        10.52         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        24.13         6.08         2.63 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       18.08        28.37        12.43        53.10        43.10         5.49 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        9.11        14.83        14.27        91.73        24.76        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       10.62        23.51        27.78        38.76         8.91        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
      127.56         5.82         6.21        30.54        21.63        11.97 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
       11.38        15.85         9.11        14.53         3.98         3.39 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
        9.44        25.28        13.61         6.38        59.41        43.20 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 
       25.78        11.54        10.95        11.77        34.52        11.74 
TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 
       13.08         3.22         2.01        15.09        11.97         0.95 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 
        6.18        23.05         2.24        11.24        13.74         3.25 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0871 
        1.35         5.39         2.89        16.50        26.33        28.90 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 
       32.02        58.78        23.11         7.10         1.15        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 
        0.92        40.93         6.12        12.43         0.99         1.94 
TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 
       17.75        17.82         7.63         5.88         7.13        17.49 
TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 
        7.96         3.39         9.86        19.10        53.19         5.49 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 
        3.91         9.93        26.07        16.31         4.27        29.00 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        0.82         9.90        13.35         3.65        18.28        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
        6.41        11.77        21.86         8.61         0.43        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 
        3.39        10.75         9.07         5.95        12.95         4.64 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.48         7.13        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 
        4.87         1.08         7.53         0.16         4.08         7.00 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.04         6.64        11.28         8.02        18.64         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        7.96         1.78         6.51         5.39         5.29         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
       10.03        13.87         9.73        31.33         7.10         9.37 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.84         1.22         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.30         4.80        16.57         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.72 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       10.39        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 
       15.75         0.20         2.53         9.17         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.18         1.51         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77         9.80        14.20         7.79        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        4.21         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.95         7.33         8.84         8.88         7.36        13.15 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.68        12.59        11.70        10.85         5.42         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44         6.02 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        11.54         7.73         3.45        17.52         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4928 
       14.33         8.22         7.46         4.77         4.54         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        3.65         9.14         2.53        10.78        16.67         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6656 TCGA-76-6657 
        2.70        11.38        17.06         8.32         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

      20P LOSS CNV 20P LOSS WILD-TYPE 
              2.04               0.07 
      20P LOSS CNV 20P LOSS WILD-TYPE 
             35.01             127.56 
      20P LOSS CNV 20P LOSS WILD-TYPE 
             16.47               9.44 
[1] "2.0 - 35.0 (16.5)" "0.1 - 127.6 (9.4)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
      "20P LOSS CNV" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"20P LOSS WILD-TYPE"       "20P LOSS CNV" "20P LOSS WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"       "20P LOSS CNV" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D75V2, continuous
D75V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS CNV          6    5
  20P LOSS WILD-TYPE  212  329
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  FEMALE            6                212
  MALE              5                329
D75V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  20P LOSS CNV                                   0                   0
  20P LOSS WILD-TYPE                             8                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  20P LOSS CNV                                    11
  20P LOSS WILD-TYPE                             515
D75V5, multiclass
                                 clus
vv                                20P LOSS CNV 20P LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0                  8
  TREATED PRIMARY GBM                        0                 18
  UNTREATED PRIMARY (DE NOVO) GBM           11                515
D75V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS CNV          8    3
  20P LOSS WILD-TYPE  373  168
     clus
vv    20P LOSS CNV 20P LOSS WILD-TYPE
  NO             8                373
  YES            3                168

Clustering(76) Variable = 20q loss
D76V1, survival
                    sevent
clus2                  0   1
  20Q LOSS CNV         1   9
  20Q LOSS WILD-TYPE 132 410
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
                10                542 
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
                 9                410 
$`20Q LOSS CNV`
TCGA-02-0051 TCGA-06-0414 TCGA-08-0245 TCGA-14-0867 TCGA-19-1390 TCGA-19-2629 
       15.06        35.01        34.75         2.04        25.38        16.47 
TCGA-28-1750 TCGA-32-2494 TCGA-76-6285 TCGA-76-6286 
        8.32        20.78         8.32        20.94 

$`20Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 
       14.70         3.19        12.59         6.54         2.50        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
        8.35         9.57         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 
       22.72         0.23        51.29         8.81        57.76        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 
        3.48        26.99        65.00        11.67        17.65        23.15 
TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 
       92.61        99.95        15.65        48.95        16.54        16.90 
TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 
       17.69        10.75        14.47         3.98        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 
       15.95        12.23         9.86         7.69        10.62         0.16 
TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
       15.91        25.71         4.37        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.29        15.42        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        32.48        10.52        18.74        14.07        23.05 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       22.16        10.75         0.20         9.21         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        16.70         9.80         7.82        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       46.59        11.80        12.79         8.65         3.19         5.46 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         2.56        56.84        10.65         5.29 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.04         3.12        13.02         0.23         2.20         2.73 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       51.32         1.97        53.98        19.00         2.53        40.37 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       37.02        26.33        28.47        14.93        10.29        18.28 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.04         2.60         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        3.88         4.96        11.84         0.20        12.43        22.49 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 
        0.33        18.02        10.32        11.80        14.96        10.29 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
        5.52         0.26        70.52         4.67         8.05         0.16 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.33         3.22         4.47         9.63         2.04        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        9.37        22.29        19.53         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92         9.17         8.91         6.71         7.17        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
        5.85         5.42        20.94         7.43         6.35         3.58 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
       26.79         8.65         7.86        13.58         4.18         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        0.76         4.90         9.27         2.83         8.52         5.95 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        6.81         5.98         4.37         0.43         9.37        11.21 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.52         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        6.71         2.73         3.75         6.12         4.54         3.91 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.76         5.36         1.45         0.49         7.36         8.28 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 
       12.85         4.77         1.55         4.77         4.96        22.68 
TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 
        3.91       108.82         1.74         4.34        13.78        10.39 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 
        7.59         3.39        53.79         1.28         6.41        15.06 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 
       22.52        14.70        35.64        19.50         0.95         9.17 
TCGA-08-0380 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       10.85        15.72         3.19        10.59         0.30         0.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
        3.48        11.77         8.52        18.44        58.19         1.28 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       10.72         4.80         6.51        15.98        17.29         5.52 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 
       14.01        14.40         1.61        10.39         5.95        10.52 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 
        7.17        65.88         0.10        38.17        25.97        24.13 
TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 
        6.08         2.63        18.08        28.37        12.43        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 
       43.10         5.49         9.11        14.83        14.27        91.73 
TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 
       24.76        18.48        10.62        23.51        27.78        38.76 
TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
        8.91        20.58       127.56         5.82         6.21        30.54 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 
       21.63        11.97        11.38        15.85         9.11        14.53 
TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 
        3.98         3.39         9.44        25.28        13.61         6.38 
TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 
       59.41        43.20        25.78        11.54        10.95        11.77 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       34.52        11.74        13.08         3.22         2.01        15.09 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
       11.97         0.95         6.18        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 
       13.74         3.25         1.35         5.39         2.89        16.50 
TCGA-14-0866 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
       26.33        28.90        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.02        58.78        23.11         7.10 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        1.15        30.15         0.92        40.93         6.12        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
        0.99         1.94        17.75        17.82         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 
        7.13        17.49         7.96         3.75         3.39         9.86 
TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
       19.10        53.19         5.49         3.91         9.93        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 
       16.31         4.27        29.00         0.82         9.90        13.35 
TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 
        3.65        18.28        13.97         6.41        11.77        21.86 
TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 
        8.61         0.43        14.27         3.39        10.75         9.07 
TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 
        5.95        12.95         4.64         3.48         7.13        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 
        0.16         4.08         7.00         7.04         6.64        11.28 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        8.02        18.64         4.73         7.96         1.78         6.51 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 
        5.39         5.29         5.42        10.03        13.87         9.73 
TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
       31.33         7.10         9.37         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.84         1.22         1.58         7.92         2.30         4.80 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.57         9.86        18.25        33.14        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.72        10.39        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
        7.59         2.86        14.40        15.75         0.20         2.53 
TCGA-28-1749 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
        9.17         7.59         8.45         1.18         1.51         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        0.13         0.66         6.74         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        3.91         9.04        15.55         2.53        11.77         9.80 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
       14.20         7.79        13.64         4.21         8.52        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 
        5.42        15.35        21.07         0.49         0.10        15.85 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 
       19.50         1.18         4.67        12.69        14.83        16.93 
TCGA-32-2491 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 
       12.23        14.99        15.95         7.33         8.84         8.88 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 
        7.36        13.15         3.68        12.59        11.70        10.85 
TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
        5.42         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 
        4.44         6.02         0.20        11.54         7.73         3.45 
TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 
       17.52         4.31        14.33         8.22         7.46         4.77 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 
        4.54         3.09         3.65         9.14         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6656 
       16.67         3.29         2.70        11.38        17.06         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.24         7.69         7.76         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

      20Q LOSS CNV 20Q LOSS WILD-TYPE 
              2.04               0.07 
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
             35.01             127.56 
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
            18.625              9.440 
[1] "2.0 - 35.0 (18.6)" "0.1 - 127.6 (9.4)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
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        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
"20Q LOSS WILD-TYPE"       "20Q LOSS CNV" "20Q LOSS WILD-TYPE" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"20Q LOSS WILD-TYPE"       "20Q LOSS CNV" "20Q LOSS WILD-TYPE" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"20Q LOSS WILD-TYPE"       "20Q LOSS CNV" "20Q LOSS WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"       "20Q LOSS CNV" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"20Q LOSS WILD-TYPE"       "20Q LOSS CNV"       "20Q LOSS CNV" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D76V2, continuous
D76V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS CNV          5    5
  20Q LOSS WILD-TYPE  213  329
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  FEMALE            5                213
  MALE              5                329
D76V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  20Q LOSS CNV                                   0                   0
  20Q LOSS WILD-TYPE                             8                  18
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  20Q LOSS CNV                                    10
  20Q LOSS WILD-TYPE                             516
D76V5, multiclass
                                 clus
vv                                20Q LOSS CNV 20Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0                  8
  TREATED PRIMARY GBM                        0                 18
  UNTREATED PRIMARY (DE NOVO) GBM           10                516
D76V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS CNV          6    4
  20Q LOSS WILD-TYPE  375  167
     clus
vv    20Q LOSS CNV 20Q LOSS WILD-TYPE
  NO             6                375
  YES            4                167

Clustering(77) Variable = 21q loss
D77V1, survival
                    sevent
clus2                  0   1
  21Q LOSS CNV         4  21
  21Q LOSS WILD-TYPE 129 398
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
                25                527 
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
                21                398 
$`21Q LOSS CNV`
TCGA-02-0011 TCGA-02-0015 TCGA-02-0106 TCGA-02-0114 TCGA-02-0266 TCGA-02-0281 
       20.71        20.61        11.67        99.95        17.69         3.98 
TCGA-02-0339 TCGA-06-0414 TCGA-06-0875 TCGA-06-6693 TCGA-08-0516 TCGA-12-0826 
       12.39        35.01         9.17         0.49        18.44        27.78 
TCGA-12-1099 TCGA-12-3653 TCGA-12-5295 TCGA-14-0740 TCGA-14-3477 TCGA-16-0850 
        3.39        11.74        13.08        11.97         3.75        16.31 
TCGA-19-0960 TCGA-19-2629 TCGA-27-2521 TCGA-32-1978 TCGA-32-4210 TCGA-76-4925 
        8.61        16.47        10.39        15.85         3.68         4.77 
TCGA-76-4934 
        2.53 

$`21Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0014 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 
       82.55        55.86        77.62        20.12        53.06        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 
       24.59        10.36        90.58         2.83        14.14         3.58 
TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 
       10.72        10.52        18.28         6.84        14.70         3.19 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 
       15.06        12.59         6.54         2.50        19.86         8.35 
TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 
        9.57         6.02        19.73        26.43        28.70        25.05 
TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
        5.49        10.19        20.84        27.22        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 
        0.23        51.29         8.81        57.76        16.93         3.48 
TCGA-02-0102 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0115 
       26.99        65.00        17.65        23.15        92.61        15.65 
TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0285 
       48.95        16.54        16.90        10.75        14.47        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.86         7.69        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        0.16        15.91        25.71         4.37        25.12        10.59 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        3.35        16.80        12.92        15.29        15.42        16.18 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
        2.70         0.26         4.04        47.31         0.10         3.55 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 
       22.72        32.48        10.52        18.74        14.07        23.05 
TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 
       22.16        10.75         0.20         9.21         2.20        11.74 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 
        2.33        20.09        16.70         9.80         7.82        19.46 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       46.59        11.80        12.79         8.65         3.19         5.46 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        9.44        11.80         2.56        56.84        10.65         5.29 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.04         3.12        13.02         0.23         2.20         2.73 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       51.32         1.97        53.98        19.00         2.53        40.37 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       37.02        26.33        28.47        14.93        10.29        18.28 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.04         2.60         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        3.88         4.96        11.84         0.20        12.43        22.49 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 
        0.33        18.02        10.32        11.80        14.96        10.29 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
        5.52         0.26        70.52         4.67         8.05         0.16 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.33         3.22         4.47         9.63         2.04        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        9.37        22.29        19.53         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
        0.92         8.91         6.71         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 
        5.42        20.94         7.43         6.35         3.58        26.79 
TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
        8.65         7.86        13.58         4.18         1.08         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.90         9.27         2.83         8.52         5.95         6.81 
TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        5.98         4.37         0.43         9.37        11.21         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 
        8.35         4.54         8.81         8.98         8.55         6.71 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.12         4.54         3.91         7.76 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        5.36         1.45         7.36         8.28        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 
        1.55         4.77         4.96        22.68        34.75         3.91 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
      108.82         1.74         4.34        13.78        10.39         7.59 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 
        3.39        53.79         1.28         6.41        15.06        22.52 
TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
       14.70        35.64        19.50         0.95         9.17        10.85 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
       15.72         3.19        10.59         0.30         0.56         3.48 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
       11.77         8.52        58.19         1.28        10.72         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 
        6.51        15.98        17.29         5.52        14.01        14.40 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 
        1.61        10.39         5.95        10.52         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        24.13         6.08         2.63 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       18.08        28.37        12.43        53.10        43.10         5.49 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        9.11        14.83        14.27        91.73        24.76        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 
       10.62        23.51        38.76         8.91        20.58       127.56 
TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 
        5.82         6.21        30.54        21.63        11.97        11.38 
TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1598 TCGA-12-1599 
       15.85         9.11        14.53         3.98         9.44        25.28 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
       13.61         6.38        59.41        43.20        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 
       10.95        11.77        34.52         3.22         2.01        15.09 
TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        0.95         6.18        23.05         2.24        11.24        13.74 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 
        3.25         1.35         5.39         2.89        16.50        26.33 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
        2.04        28.90        15.95        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 
        1.12         3.75        32.02        58.78        23.11         7.10 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
        1.15        30.15         0.92        40.93         6.12        12.43 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 
        0.99         1.94        17.75        17.82         7.63         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 
        7.13        17.49         7.96         3.39         9.86        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 
       53.19         5.49         3.91         9.93        26.07         4.27 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
       29.00         0.82         9.90        13.35         3.65        18.28 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0962 TCGA-19-0963 
       13.97         6.41        11.77        21.86         0.43        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 
        3.39        10.75         9.07         5.95        12.95         4.64 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 
       25.38         3.48         7.13        12.66         3.25         0.13 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        9.67         4.87         1.08         7.53         0.16         4.08 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         7.04         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
        4.73         7.96         1.78         6.51         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
        5.42        10.03        13.87         9.73        31.33         7.10 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
        9.37         9.40        14.86         5.49         8.84         1.22 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        1.58         7.92         2.30         4.80        16.57         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
       18.25        33.14        21.30        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       24.72        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 
       15.75         0.20         2.53         9.17         8.32         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 
        8.45         1.18         1.51         2.83         0.13         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        6.74         4.77         7.30         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.55         2.53        11.77         9.80        14.20         7.79 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         4.21         8.52        10.49         5.42        15.35 
TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
       21.07         0.49         0.10        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.95         7.33         8.84         8.88         7.36        13.15 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
       12.59        11.70        10.85         5.42         0.85        13.35 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44         6.02         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.54         7.73         3.45        17.52         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        8.22         7.46         4.54         3.09         3.65         9.14 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.67         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 
        8.32        20.94         4.83         5.03         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        7.69         7.76         1.61        17.69         0.07 

      21Q LOSS CNV 21Q LOSS WILD-TYPE 
              0.49               0.07 
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
             99.95             127.56 
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
             11.97               9.40 
[1] "0.5 - 100.0 (12.0)" "0.1 - 127.6 (9.4)" 
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0089         TCGA-02-0099         TCGA-02-0102 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0104         TCGA-02-0106         TCGA-02-0107 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-02-0111         TCGA-02-0113         TCGA-02-0114 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-02-0115         TCGA-02-0116         TCGA-02-0258 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0260         TCGA-02-0266         TCGA-02-0269 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-02-0271         TCGA-02-0281         TCGA-02-0285 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-02-0289         TCGA-02-0290         TCGA-02-0317 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0321         TCGA-02-0324         TCGA-02-0325 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0326         TCGA-02-0330         TCGA-02-0332 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0333         TCGA-02-0337         TCGA-02-0338 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0339         TCGA-02-0422         TCGA-02-0430 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0432         TCGA-02-0440         TCGA-02-0446 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-0451         TCGA-02-0456         TCGA-02-2466 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-2470         TCGA-02-2483         TCGA-02-2485 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-02-2486         TCGA-06-0119         TCGA-06-0122 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0124         TCGA-06-0125         TCGA-06-0126 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0127         TCGA-06-0128         TCGA-06-0129 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0130         TCGA-06-0132         TCGA-06-0133 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0137         TCGA-06-0138         TCGA-06-0139 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0140         TCGA-06-0141         TCGA-06-0142 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0143         TCGA-06-0145         TCGA-06-0146 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0147         TCGA-06-0148         TCGA-06-0149 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0150         TCGA-06-0151         TCGA-06-0152 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0154         TCGA-06-0155         TCGA-06-0157 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0158         TCGA-06-0159         TCGA-06-0160 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0162         TCGA-06-0164         TCGA-06-0165 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0166         TCGA-06-0168         TCGA-06-0169 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0171         TCGA-06-0173         TCGA-06-0174 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0175         TCGA-06-0176         TCGA-06-0177 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0178         TCGA-06-0179         TCGA-06-0182 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0184         TCGA-06-0185         TCGA-06-0187 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0188         TCGA-06-0189         TCGA-06-0190 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0192         TCGA-06-0194         TCGA-06-0195 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0197         TCGA-06-0201         TCGA-06-0206 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0208         TCGA-06-0209         TCGA-06-0210 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0211         TCGA-06-0213         TCGA-06-0214 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0216         TCGA-06-0219         TCGA-06-0221 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0237         TCGA-06-0238         TCGA-06-0241 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0394         TCGA-06-0397         TCGA-06-0402 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0409         TCGA-06-0410         TCGA-06-0412 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0413         TCGA-06-0414         TCGA-06-0644 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
        TCGA-06-0645         TCGA-06-0646         TCGA-06-0648 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0649         TCGA-06-0650         TCGA-06-0686 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0743         TCGA-06-0744         TCGA-06-0745 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0747         TCGA-06-0749         TCGA-06-0750 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0875         TCGA-06-0876         TCGA-06-0877 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0878         TCGA-06-0879         TCGA-06-0881 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-0882         TCGA-06-0939         TCGA-06-1084 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-1086         TCGA-06-1087         TCGA-06-1800 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-1801         TCGA-06-1802         TCGA-06-1804 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-1805         TCGA-06-2557         TCGA-06-2558 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-2559         TCGA-06-2561         TCGA-06-2562 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-2563         TCGA-06-2564         TCGA-06-2565 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-2566         TCGA-06-2567         TCGA-06-2569 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-2570         TCGA-06-5408         TCGA-06-5410 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-5411         TCGA-06-5412         TCGA-06-5413 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-5414         TCGA-06-5415         TCGA-06-5416 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-5418         TCGA-06-5856         TCGA-06-5858 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-5859         TCGA-06-6388         TCGA-06-6389 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-6390         TCGA-06-6391         TCGA-06-6693 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"       "21Q LOSS CNV" 
        TCGA-06-6694         TCGA-06-6695         TCGA-06-6697 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-6698         TCGA-06-6699         TCGA-06-6700 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-06-6701         TCGA-08-0244         TCGA-08-0245 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-08-0246         TCGA-08-0344         TCGA-08-0345 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-08-0346         TCGA-08-0347         TCGA-08-0348 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-08-0349         TCGA-08-0350         TCGA-08-0351 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-08-0352         TCGA-08-0353         TCGA-08-0354 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-08-0355         TCGA-08-0356         TCGA-08-0357 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-08-0358         TCGA-08-0359         TCGA-08-0375 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-08-0380         TCGA-08-0386         TCGA-08-0389 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-08-0390         TCGA-08-0392         TCGA-08-0509 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-08-0510         TCGA-08-0512         TCGA-08-0514 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-08-0516         TCGA-08-0517         TCGA-08-0518 
      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-08-0520         TCGA-08-0521         TCGA-08-0524 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-08-0525         TCGA-08-0529         TCGA-08-0531 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-12-0615         TCGA-12-0616         TCGA-12-0618 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-12-0619         TCGA-12-0620         TCGA-12-0653 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-12-0654         TCGA-12-0656         TCGA-12-0657 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-12-0662         TCGA-12-0670         TCGA-12-0688 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-12-0691         TCGA-12-0692         TCGA-12-0703 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-12-0707         TCGA-12-0769         TCGA-12-0772 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-12-0773         TCGA-12-0775         TCGA-12-0776 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"21Q LOSS WILD-TYPE"       "21Q LOSS CNV" "21Q LOSS WILD-TYPE" 
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      "21Q LOSS CNV" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D77V2, continuous
D77V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS CNV         13   12
  21Q LOSS WILD-TYPE  205  322
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  FEMALE           13                205
  MALE             12                322
D77V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  21Q LOSS CNV                                   0                   1
  21Q LOSS WILD-TYPE                             8                  17
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  21Q LOSS CNV                                    24
  21Q LOSS WILD-TYPE                             502
D77V5, multiclass
                                 clus
vv                                21Q LOSS CNV 21Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0                  8
  TREATED PRIMARY GBM                        1                 17
  UNTREATED PRIMARY (DE NOVO) GBM           24                502
D77V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS CNV         16    9
  21Q LOSS WILD-TYPE  365  162
     clus
vv    21Q LOSS CNV 21Q LOSS WILD-TYPE
  NO            16                365
  YES            9                162

Clustering(78) Variable = 22q loss
D78V1, survival
                    sevent
clus2                  0   1
  22Q LOSS CNV        35 105
  22Q LOSS WILD-TYPE  98 314
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
               140                412 
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
               105                314 
$`22Q LOSS CNV`
TCGA-02-0007 TCGA-02-0015 TCGA-02-0016 TCGA-02-0027 TCGA-02-0039 TCGA-02-0043 
       23.18        20.61        55.86        10.36        10.52        18.28 
TCGA-02-0059 TCGA-02-0086 TCGA-02-0099 TCGA-02-0321 TCGA-02-0325 TCGA-02-0326 
        9.57         8.81         3.48         9.86        10.62         0.16 
TCGA-02-0333 TCGA-02-0456 TCGA-02-2466 TCGA-02-2486 TCGA-06-0129 TCGA-06-0140 
        4.37         3.35        16.80        16.18        32.48         0.20 
TCGA-06-0152 TCGA-06-0158 TCGA-06-0159 TCGA-06-0162 TCGA-06-0164 TCGA-06-0166 
       11.80         5.46         9.44         2.56        56.84         5.29 
TCGA-06-0168 TCGA-06-0175 TCGA-06-0185 TCGA-06-0188 TCGA-06-0194 TCGA-06-0197 
       19.04         2.73        37.02        28.47         4.67         2.60 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0241 TCGA-06-0397 
       22.49         0.33        18.02        10.32        14.96         5.52 
TCGA-06-0410 TCGA-06-0747 TCGA-06-0875 TCGA-06-0878 TCGA-06-0882 TCGA-06-0939 
        4.67         2.70         9.17         7.17         5.42        20.94 
TCGA-06-1084 TCGA-06-1804 TCGA-06-2558 TCGA-06-2562 TCGA-06-2567 TCGA-06-5408 
        7.43        13.58         0.76         2.83         4.37        11.21 
TCGA-06-5411 TCGA-06-5413 TCGA-06-5418 TCGA-06-5856 TCGA-06-6389 TCGA-06-6390 
        8.35         8.81         2.73         3.75         7.76         5.36 
TCGA-06-6693 TCGA-06-6697 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0349 
        0.49        12.85        22.68        34.75         3.91         7.59 
TCGA-08-0350 TCGA-08-0354 TCGA-08-0386 TCGA-08-0389 TCGA-08-0392 TCGA-08-0512 
        3.39        15.06        15.72         3.19         0.30        11.77 
TCGA-08-0520 TCGA-12-0619 TCGA-12-0620 TCGA-12-0662 TCGA-12-0670 TCGA-12-0776 
       10.72        10.39         5.95        38.17        25.97         9.11 
TCGA-12-0821 TCGA-12-0826 TCGA-12-1088 TCGA-12-1091 TCGA-12-1096 TCGA-12-1097 
       10.62        27.78       127.56        30.54         9.11        14.53 
TCGA-12-1598 TCGA-12-1600 TCGA-12-3646 TCGA-12-3651 TCGA-12-3653 TCGA-12-5295 
        9.44        13.61        43.20        11.77        11.74        13.08 
TCGA-14-0736 TCGA-14-0862 TCGA-14-0865 TCGA-14-1034 TCGA-14-1402 TCGA-14-1450 
       15.09         2.89        16.50        15.95        32.02        58.78 
TCGA-14-1454 TCGA-14-1821 TCGA-15-0742 TCGA-15-1447 TCGA-16-1056 TCGA-19-0962 
       30.15        17.75         9.86        53.19        13.35         0.43 
TCGA-19-0964 TCGA-19-1389 TCGA-19-1392 TCGA-19-1791 TCGA-19-2620 TCGA-19-2629 
        3.39         4.64         3.48         0.13         4.87        16.47 
TCGA-19-2631 TCGA-19-5947 TCGA-19-5956 TCGA-19-5958 TCGA-19-5960 TCGA-26-5132 
        7.00         6.64         6.51         5.39         5.42         9.40 
TCGA-26-5136 TCGA-27-1830 TCGA-27-1835 TCGA-27-2519 TCGA-27-2523 TCGA-27-2527 
        1.22         4.80        21.30        10.39        16.08        14.40 
TCGA-28-1752 TCGA-28-2506 TCGA-28-2509 TCGA-28-5207 TCGA-28-5208 TCGA-28-5213 
        8.45         6.74         4.77         9.04        15.55         9.80 
TCGA-32-1970 TCGA-32-1978 TCGA-32-1986 TCGA-32-2491 TCGA-32-2615 TCGA-32-2632 
       15.35        15.85        12.69        12.23        15.95         8.84 
TCGA-32-2634 TCGA-41-2573 TCGA-41-2575 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 
        8.88         8.94         9.53         6.02         0.20         7.73 
TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4929 TCGA-76-4934 TCGA-76-6280 
        8.22         4.77         4.54         3.65         2.53        11.38 
TCGA-76-6657 TCGA-87-5896 
        5.03         0.07 

$`22Q LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0009 TCGA-02-0010 TCGA-02-0011 
        9.14         4.73        18.35        10.59        35.41        20.71 
TCGA-02-0014 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 
       82.55        77.62        20.12        53.06        42.74        24.59 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0046 
       90.58         2.83        14.14         3.58        10.72         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.70         3.19        15.06        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0069 
       19.86         8.35         6.02        19.73        26.43        28.70 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 
       25.05         5.49        10.19        20.84        27.22        89.72 
TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0102 
       22.72         0.23        51.29        57.76        16.93        26.99 
TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 
       65.00        11.67        17.65        23.15        92.61        99.95 
TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       15.65        48.95        16.54        16.90        17.69        10.75 
TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 
       14.47         3.98        13.87        14.20        15.95        12.23 
TCGA-02-0324 TCGA-02-0330 TCGA-02-0332 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 
        7.69        15.91        25.71        25.12        10.59        12.39 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 
       14.50        10.55        47.11        11.34         9.24        16.18 
TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       12.92        15.29        15.42         2.70         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0130 TCGA-06-0132 
       47.31         0.10         3.55        22.72        10.52        18.74 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0141 TCGA-06-0142 
       14.07        23.05        22.16        10.75         9.21         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        16.70         9.80         7.82 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0160 
       19.46        46.59        12.79         8.65         3.19        11.80 
TCGA-06-0165 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0176 
       10.65         3.12        13.02         0.23         2.20        51.32 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0187 
        1.97        53.98        19.00         2.53        40.37        26.33 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0195 TCGA-06-0201 TCGA-06-0206 
       14.93        10.29        18.28         7.04         0.39         6.44 
TCGA-06-0208 TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
        5.46         3.88         4.96        11.84         0.20        12.43 
TCGA-06-0238 TCGA-06-0394 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 
       11.80        10.29         0.26        70.52         8.05         0.16 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
       35.01        12.33         3.22         4.47         9.63         2.04 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0749 
       23.57         9.37        22.29        19.53         5.36         2.14 
TCGA-06-0750 TCGA-06-0876 TCGA-06-0877 TCGA-06-0879 TCGA-06-0881 TCGA-06-1086 
        0.92         8.91         6.71        22.98         5.85         6.35 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1805 TCGA-06-2557 
        3.58        26.79         8.65         7.86         4.18         1.08 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        4.90         9.27         8.52         5.95         6.81         5.98 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5410 TCGA-06-5412 TCGA-06-5414 TCGA-06-5415 
        0.43         9.37         3.52         4.54         8.98         8.55 
TCGA-06-5416 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6391 TCGA-06-6694 
        6.71         6.12         4.54         3.91         1.45         7.36 
TCGA-06-6695 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0344 
        8.28         4.77         1.55         4.77         4.96       108.82 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0351 TCGA-08-0352 
        1.74         4.34        13.78        10.39        53.79         1.28 
TCGA-08-0353 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
        6.41        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0380 TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 TCGA-08-0514 
        9.17        10.85        10.59         0.56         3.48         8.52 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0521 TCGA-08-0524 TCGA-08-0525 
       18.44        58.19         1.28         4.80         6.51        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0653 
       17.29         5.52        14.01        14.40         1.61        10.52 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        7.17        65.88         0.10        24.13         6.08         2.63 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       18.08        28.37        12.43        53.10        43.10         5.49 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0822 
       14.83        14.27        91.73        24.76        18.48        23.51 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1089 TCGA-12-1090 TCGA-12-1092 
       38.76         8.91        20.58         5.82         6.21        21.63 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1098 TCGA-12-1099 TCGA-12-1599 
       11.97        11.38        15.85         3.98         3.39        25.28 
TCGA-12-1602 TCGA-12-3644 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        6.38        59.41        25.78        11.54        10.95        34.52 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
        3.22         2.01        11.97         0.95         6.18        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
        2.24        11.24        13.74         3.25         1.35         5.39 
TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 
       26.33         2.04        28.90        19.30         0.79         1.38 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1455 
        1.12         3.75        23.11         7.10         1.15         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 
       40.93         6.12        12.43         0.99         1.94        17.82 
TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3477 
        7.63         5.88         7.13        17.49         7.96         3.75 
TCGA-14-4157 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
        3.39        19.10         5.49         3.91         9.93        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1060 
       16.31         4.27        29.00         0.82         9.90         3.65 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
       18.28        13.97         6.41        11.77        21.86         8.61 
TCGA-19-0963 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1390 
       14.27        10.75         9.07         5.95        12.95        25.38 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-2619 TCGA-19-2621 TCGA-19-2623 
        7.13        12.66         3.25         9.67         1.08         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-4065 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        0.16         4.08         7.04        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5959 TCGA-26-1438 TCGA-26-1439 
        4.73         7.96         1.78         5.29        10.03        13.87 
TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5133 TCGA-26-5134 
        9.73        31.33         7.10         9.37        14.86         5.49 
TCGA-26-5135 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1831 TCGA-27-1832 
        8.84         1.58         7.92         2.30        16.57         9.86 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       18.25        33.14        30.05        14.04        11.51        24.72 
TCGA-27-2521 TCGA-27-2524 TCGA-27-2526 TCGA-27-2528 TCGA-28-1746 TCGA-28-1747 
       10.39         7.59         2.86        15.75         0.20         2.53 
TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
        9.17         8.32         7.59         1.18         1.51         2.83 
TCGA-28-1757 TCGA-28-2502 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5209 
        0.13         0.66         7.30         5.26         3.91         2.53 
TCGA-28-5211 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       11.77        14.20         7.79        13.64         4.21         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 TCGA-32-1979 
       10.49         5.42        21.07         0.49         0.10        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1987 TCGA-32-1991 TCGA-32-2494 TCGA-32-2495 
        1.18         4.67        14.83        16.93        20.78        14.99 
TCGA-32-2616 TCGA-32-2638 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
        7.33         7.36        13.15         3.68        12.59        11.70 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-3392 TCGA-41-3393 
       10.85         5.42         0.85        13.35         0.99         4.44 
TCGA-41-5651 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
       11.54         3.45        17.52         4.31        14.33         7.46 
TCGA-76-4928 TCGA-76-4931 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        3.09         9.14        10.78        16.67         3.29         2.70 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6661 TCGA-76-6662 
       17.06         8.32        20.94         4.83         0.23         9.24 
TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        7.69         7.76         1.61        17.69 

      22Q LOSS CNV 22Q LOSS WILD-TYPE 
              0.07               0.10 
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
            127.56             108.82 
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
             9.420              9.765 
[1] "0.1 - 127.6 (9.4)" "0.1 - 108.8 (9.8)"
        TCGA-02-0001         TCGA-02-0003         TCGA-02-0006 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0007         TCGA-02-0009         TCGA-02-0010 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0011         TCGA-02-0014         TCGA-02-0015 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-02-0016         TCGA-02-0021         TCGA-02-0023 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0024         TCGA-02-0025         TCGA-02-0026 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0027         TCGA-02-0028         TCGA-02-0033 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0034         TCGA-02-0037         TCGA-02-0038 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0039         TCGA-02-0043         TCGA-02-0046 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-02-0047         TCGA-02-0048         TCGA-02-0051 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0052         TCGA-02-0054         TCGA-02-0055 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0057         TCGA-02-0058         TCGA-02-0059 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-02-0060         TCGA-02-0064         TCGA-02-0068 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0069         TCGA-02-0070         TCGA-02-0071 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0074         TCGA-02-0075         TCGA-02-0079 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0080         TCGA-02-0083         TCGA-02-0084 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-02-0085         TCGA-02-0086         TCGA-02-0087 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
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        TCGA-12-0778         TCGA-12-0780         TCGA-12-0818 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-12-0819         TCGA-12-0820         TCGA-12-0821 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-12-0822         TCGA-12-0826         TCGA-12-0827 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-12-0828         TCGA-12-0829         TCGA-12-1088 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-12-1089         TCGA-12-1090         TCGA-12-1091 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-12-1092         TCGA-12-1093         TCGA-12-1094 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-12-1095         TCGA-12-1096         TCGA-12-1097 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-12-1098         TCGA-12-1099         TCGA-12-1598 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-12-1599         TCGA-12-1600         TCGA-12-1602 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-12-3644         TCGA-12-3646         TCGA-12-3648 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-12-3649         TCGA-12-3650         TCGA-12-3651 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-12-3652         TCGA-12-3653         TCGA-12-5295 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-12-5299         TCGA-12-5301         TCGA-14-0736 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-14-0740         TCGA-14-0781         TCGA-14-0783 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-14-0786         TCGA-14-0787         TCGA-14-0789 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-14-0790         TCGA-14-0812         TCGA-14-0813 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-14-0817         TCGA-14-0862         TCGA-14-0865 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-14-0866         TCGA-14-0867         TCGA-14-0871 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-14-1034         TCGA-14-1037         TCGA-14-1043 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-14-1395         TCGA-14-1396         TCGA-14-1401 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-14-1402         TCGA-14-1450         TCGA-14-1451 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-14-1452         TCGA-14-1453         TCGA-14-1454 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-14-1455         TCGA-14-1456         TCGA-14-1458 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-14-1459         TCGA-14-1794         TCGA-14-1795 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-14-1821         TCGA-14-1823         TCGA-14-1825 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-14-1827         TCGA-14-1829         TCGA-14-2554 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-14-2555         TCGA-14-3477         TCGA-14-4157 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-15-0742         TCGA-15-1446         TCGA-15-1447 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-15-1449         TCGA-16-0846         TCGA-16-0848 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-16-0849         TCGA-16-0850         TCGA-16-0861 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-16-1045         TCGA-16-1047         TCGA-16-1055 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-16-1056         TCGA-16-1060         TCGA-16-1062 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-16-1063         TCGA-16-1460         TCGA-19-0955 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-19-0957         TCGA-19-0960         TCGA-19-0962 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-19-0963         TCGA-19-0964         TCGA-19-1385 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-19-1386         TCGA-19-1387         TCGA-19-1388 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-19-1389         TCGA-19-1390         TCGA-19-1392 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-19-1786         TCGA-19-1787         TCGA-19-1789 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-19-1791         TCGA-19-2619         TCGA-19-2620 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-19-2621         TCGA-19-2623         TCGA-19-2624 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-19-2625         TCGA-19-2629         TCGA-19-2631 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-19-4065         TCGA-19-5947         TCGA-19-5950 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-19-5951         TCGA-19-5952         TCGA-19-5953 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-19-5954         TCGA-19-5955         TCGA-19-5956 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-19-5958         TCGA-19-5959         TCGA-19-5960 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-26-1438         TCGA-26-1439         TCGA-26-1440 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-26-1442         TCGA-26-1443         TCGA-26-1799 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-26-5132         TCGA-26-5133         TCGA-26-5134 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-26-5135         TCGA-26-5136         TCGA-26-5139 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-26-6173         TCGA-26-6174         TCGA-27-1830 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-27-1831         TCGA-27-1832         TCGA-27-1833 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-27-1834         TCGA-27-1835         TCGA-27-1836 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-27-1837         TCGA-27-1838         TCGA-27-2518 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-27-2519         TCGA-27-2521         TCGA-27-2523 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-27-2524         TCGA-27-2526         TCGA-27-2527 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-27-2528         TCGA-28-1746         TCGA-28-1747 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-28-1749         TCGA-28-1750         TCGA-28-1751 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-28-1752         TCGA-28-1753         TCGA-28-1755 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-28-1756         TCGA-28-1757         TCGA-28-2502 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-28-2506         TCGA-28-2509         TCGA-28-2513 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-28-2514         TCGA-28-5204         TCGA-28-5207 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-28-5208         TCGA-28-5209         TCGA-28-5211 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-28-5213         TCGA-28-5214         TCGA-28-5215 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-28-5216         TCGA-28-5218         TCGA-28-5219 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-28-5220         TCGA-28-6450         TCGA-32-1970 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-32-1973         TCGA-32-1976         TCGA-32-1977 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-32-1978         TCGA-32-1979         TCGA-32-1980 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-32-1982         TCGA-32-1986         TCGA-32-1987 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-32-1991         TCGA-32-2491         TCGA-32-2494 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-32-2495         TCGA-32-2615         TCGA-32-2616 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-32-2632         TCGA-32-2634         TCGA-32-2638 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-32-4208         TCGA-32-4210         TCGA-32-4211 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-32-4213         TCGA-32-4719         TCGA-32-5222 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-41-2571         TCGA-41-2572         TCGA-41-2573 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-41-2575         TCGA-41-3392         TCGA-41-3393 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-41-3915         TCGA-41-4097         TCGA-41-5651 
      "22Q LOSS CNV"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-41-6646         TCGA-74-6573         TCGA-74-6575 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-74-6577         TCGA-74-6578         TCGA-74-6581 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-74-6584         TCGA-76-4925         TCGA-76-4926 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV"       "22Q LOSS CNV" 
        TCGA-76-4928         TCGA-76-4929         TCGA-76-4931 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-76-4934         TCGA-76-4935         TCGA-76-6191 
      "22Q LOSS CNV" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-76-6192         TCGA-76-6193         TCGA-76-6280 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
        TCGA-76-6282         TCGA-76-6285         TCGA-76-6286 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-76-6656         TCGA-76-6657         TCGA-76-6661 
"22Q LOSS WILD-TYPE"       "22Q LOSS CNV" "22Q LOSS WILD-TYPE" 
        TCGA-76-6662         TCGA-76-6663         TCGA-76-6664 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-81-5910         TCGA-81-5911         TCGA-87-5896 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"       "22Q LOSS CNV" 
[1] "hr=" "1.1"
D78V2, continuous
D78V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS CNV         56   84
  22Q LOSS WILD-TYPE  162  250
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  FEMALE           56                162
  MALE             84                250
D78V4, continuous
                    vv
clus                 GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  22Q LOSS CNV                                   2                   3
  22Q LOSS WILD-TYPE                             6                  15
                    vv
clus                 UNTREATED PRIMARY (DE NOVO) GBM
  22Q LOSS CNV                                   135
  22Q LOSS WILD-TYPE                             391
D78V5, multiclass
                                 clus
vv                                22Q LOSS CNV 22Q LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              2                  6
  TREATED PRIMARY GBM                        3                 15
  UNTREATED PRIMARY (DE NOVO) GBM          135                391
D78V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS CNV         99   41
  22Q LOSS WILD-TYPE  282  130
     clus
vv    22Q LOSS CNV 22Q LOSS WILD-TYPE
  NO            99                282
  YES           41                130

Clustering(79) Variable = Xq loss
D79V1, survival
                   sevent
clus2                 0   1
  XQ LOSS CNV         4   7
  XQ LOSS WILD-TYPE 129 412
      XQ LOSS CNV XQ LOSS WILD-TYPE 
               11               541 
      XQ LOSS CNV XQ LOSS WILD-TYPE 
                7               412 
$`XQ LOSS CNV`
TCGA-06-0162 TCGA-06-0221 TCGA-06-2564 TCGA-06-2569 TCGA-06-2570 TCGA-12-3653 
        2.56        18.02         5.95         0.43         9.37        11.74 
TCGA-14-1453 TCGA-19-1388 TCGA-19-5947 TCGA-26-1440 TCGA-76-4926 
        1.15        12.95         6.64         9.73         4.54 

$`XQ LOSS WILD-TYPE`
TCGA-02-0001 TCGA-02-0003 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        18.35        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
       20.71        82.55        20.61        55.86        77.62        20.12 
TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 
       53.06        42.74        24.59        10.36        90.58         2.83 
TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       14.14         3.58        10.72        10.52        18.28         6.84 
TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 
       14.70         3.19        15.06        12.59         6.54         2.50 
TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 
       19.86         8.35         9.57         6.02        19.73        26.43 
TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 TCGA-02-0079 
       28.70        25.05         5.49        10.19        20.84        27.22 
TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 TCGA-02-0087 
       89.72        22.72         0.23        51.29         8.81        57.76 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 TCGA-02-0107 
       16.93         3.48        26.99        65.00        11.67        17.65 
TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 TCGA-02-0258 
       23.15        92.61        99.95        15.65        48.95        16.54 
TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0285 
       16.90        17.69        10.75        14.47         3.98        13.87 
TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 
       14.20        15.95        12.23         9.86         7.69        10.62 
TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0338 
        0.16        15.91        25.71         4.37        25.12        10.59 
TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0440 TCGA-02-0446 
       12.39        14.50        10.55        47.11        11.34         9.24 
TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
       16.18         3.35        16.80        12.92        15.29        15.42 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 
       16.18         2.70         0.26         4.04        47.31         0.10 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0133 
        3.55        22.72        32.48        10.52        18.74        14.07 
TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       23.05        22.16        10.75         0.20         9.21         2.20 
TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 
       11.74         2.33        20.09        16.70         9.80         7.82 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
       19.46        46.59        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 
        5.46         9.44        11.80        56.84        10.65         5.29 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 
       19.04         3.12        13.02         0.23         2.20         2.73 
TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 
       51.32         1.97        53.98        19.00         2.53        40.37 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 
       37.02        26.33        28.47        14.93        10.29        18.28 
TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 
        4.67         7.04         2.60         0.39         6.44         5.46 
TCGA-06-0209 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
        3.88         4.96        11.84         0.20        12.43        22.49 
TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
        0.33        10.32        11.80        14.96        10.29         5.52 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
        0.26        70.52         4.67         8.05         0.16        35.01 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.33         3.22         4.47         9.63         2.04        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        9.37        22.29        19.53         5.36         2.70         2.14 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92         9.17         8.91         6.71         7.17        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
        5.85         5.42        20.94         7.43         6.35         3.58 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
       26.79         8.65         7.86        13.58         4.18         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2565 
        0.76         4.90         9.27         2.83         8.52         6.81 
TCGA-06-2566 TCGA-06-2567 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        5.98         4.37        11.21         3.52         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         6.71         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.12         4.54         3.91         7.76         5.36         1.45 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        0.49         7.36         8.28        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 
        4.77         4.96        22.68        34.75         3.91       108.82 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.74         4.34        13.78        10.39         7.59         3.39 
TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
       53.79         1.28         6.41        15.06        22.52        14.70 
TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 TCGA-08-0386 
       35.64        19.50         0.95         9.17        10.85        15.72 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 
        3.19        10.59         0.30         0.56         3.48        11.77 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
        8.52        18.44        58.19         1.28        10.72         4.80 
TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 
        6.51        15.98        17.29         5.52        14.01        14.40 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 
        1.61        10.39         5.95        10.52         7.17        65.88 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
        0.10        38.17        25.97        24.13         6.08         2.63 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       18.08        28.37        12.43        53.10        43.10         5.49 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
        9.11        14.83        14.27        91.73        24.76        18.48 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
       10.62        23.51        27.78        38.76         8.91        20.58 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
      127.56         5.82         6.21        30.54        21.63        11.97 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
       11.38        15.85         9.11        14.53         3.98         3.39 
TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
        9.44        25.28        13.61         6.38        59.41        43.20 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5295 
       25.78        11.54        10.95        11.77        34.52        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 
        3.22         2.01        15.09        11.97         0.95         6.18 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.74         3.25         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
        5.39         2.89        16.50        26.33         2.04        28.90 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 
       15.95        19.30         0.79         1.38         1.12         3.75 
TCGA-14-1402 TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1454 TCGA-14-1455 
       32.02        58.78        23.11         7.10        30.15         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
       40.93         6.12        12.43         0.99         1.94        17.75 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
       17.82         7.63         5.88         7.13        17.49         7.96 
TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 
        3.75         3.39         9.86        19.10        53.19         5.49 
TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 
        3.91         9.93        26.07        16.31         4.27        29.00 
TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 
        0.82         9.90        13.35         3.65        18.28        13.97 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 
        6.41        11.77        21.86         8.61         0.43        14.27 
TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1389 TCGA-19-1390 
        3.39        10.75         9.07         5.95         4.64        25.38 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
        3.48         7.13        12.66         3.25         0.13         9.67 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        4.87         1.08         7.53         0.16         4.08        16.47 
TCGA-19-2631 TCGA-19-4065 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.00         7.04        11.28         8.02        18.64         4.73 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        7.96         1.78         6.51         5.39         5.29         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
       10.03        13.87        31.33         7.10         9.37         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.84         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.30         4.80        16.57         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.72        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.75 
TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        0.20         2.53         9.17         8.32         7.59         8.45 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 TCGA-28-2502 TCGA-28-2506 
        1.18         1.51         2.83         0.13         0.66         6.74 
TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        4.77         7.30         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
        2.53        11.77         9.80        14.20         7.79        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 
        4.21         8.52        10.49         5.42        15.35        21.07 
TCGA-32-1976 TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
        0.49         0.10        15.85        19.50         1.18         4.67 
TCGA-32-1986 TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
       12.69        14.83        16.93        12.23        20.78        14.99 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.95         7.33         8.84         8.88         7.36        13.15 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.68        12.59        11.70        10.85         5.42         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44         6.02 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        11.54         7.73         3.45        17.52         4.31 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4928 TCGA-76-4929 
       14.33         8.22         7.46         4.77         3.09         3.65 
TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
        9.14         2.53        10.78        16.67         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 
       11.38        17.06         8.32        20.94         4.83         5.03 
TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 
        0.23         9.24         7.69         7.76         1.61        17.69 
TCGA-87-5896 
        0.07 

      XQ LOSS CNV XQ LOSS WILD-TYPE 
             0.43              0.07 
      XQ LOSS CNV XQ LOSS WILD-TYPE 
            18.02            127.56 
      XQ LOSS CNV XQ LOSS WILD-TYPE 
             6.64              9.63 
[1] "0.4 - 18.0 (6.6)"  "0.1 - 127.6 (9.6)"
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0001        TCGA-02-0003        TCGA-02-0006        TCGA-02-0007 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0009        TCGA-02-0010        TCGA-02-0011        TCGA-02-0014 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0015        TCGA-02-0016        TCGA-02-0021        TCGA-02-0023 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0024        TCGA-02-0025        TCGA-02-0026        TCGA-02-0027 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0028        TCGA-02-0033        TCGA-02-0034        TCGA-02-0037 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0038        TCGA-02-0039        TCGA-02-0043        TCGA-02-0046 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0047        TCGA-02-0048        TCGA-02-0051        TCGA-02-0052 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0054        TCGA-02-0055        TCGA-02-0057        TCGA-02-0058 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0059        TCGA-02-0060        TCGA-02-0064        TCGA-02-0068 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0069        TCGA-02-0070        TCGA-02-0071        TCGA-02-0074 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0075        TCGA-02-0079        TCGA-02-0080        TCGA-02-0083 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0084        TCGA-02-0085        TCGA-02-0086        TCGA-02-0087 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0089        TCGA-02-0099        TCGA-02-0102        TCGA-02-0104 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0106        TCGA-02-0107        TCGA-02-0111        TCGA-02-0113 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0114        TCGA-02-0115        TCGA-02-0116        TCGA-02-0258 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0260        TCGA-02-0266        TCGA-02-0269        TCGA-02-0271 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0281        TCGA-02-0285        TCGA-02-0289        TCGA-02-0290 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0317        TCGA-02-0321        TCGA-02-0324        TCGA-02-0325 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0326        TCGA-02-0330        TCGA-02-0332        TCGA-02-0333 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0337        TCGA-02-0338        TCGA-02-0339        TCGA-02-0422 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0430        TCGA-02-0432        TCGA-02-0440        TCGA-02-0446 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-0451        TCGA-02-0456        TCGA-02-2466        TCGA-02-2470 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-02-2483        TCGA-02-2485        TCGA-02-2486        TCGA-06-0119 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0122        TCGA-06-0124        TCGA-06-0125        TCGA-06-0126 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0127        TCGA-06-0128        TCGA-06-0129        TCGA-06-0130 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0132        TCGA-06-0133        TCGA-06-0137        TCGA-06-0138 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0139        TCGA-06-0140        TCGA-06-0141        TCGA-06-0142 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0143        TCGA-06-0145        TCGA-06-0146        TCGA-06-0147 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0148        TCGA-06-0149        TCGA-06-0150        TCGA-06-0151 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0152        TCGA-06-0154        TCGA-06-0155        TCGA-06-0157 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0158        TCGA-06-0159        TCGA-06-0160        TCGA-06-0162 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-06-0164        TCGA-06-0165        TCGA-06-0166        TCGA-06-0168 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0169        TCGA-06-0171        TCGA-06-0173        TCGA-06-0174 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0175        TCGA-06-0176        TCGA-06-0177        TCGA-06-0178 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0179        TCGA-06-0182        TCGA-06-0184        TCGA-06-0185 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0187        TCGA-06-0188        TCGA-06-0189        TCGA-06-0190 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0192        TCGA-06-0194        TCGA-06-0195        TCGA-06-0197 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0201        TCGA-06-0206        TCGA-06-0208        TCGA-06-0209 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0210        TCGA-06-0211        TCGA-06-0213        TCGA-06-0214 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0216        TCGA-06-0219        TCGA-06-0221        TCGA-06-0237 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-06-0238        TCGA-06-0241        TCGA-06-0394        TCGA-06-0397 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0402        TCGA-06-0409        TCGA-06-0410        TCGA-06-0412 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0413        TCGA-06-0414        TCGA-06-0644        TCGA-06-0645 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0646        TCGA-06-0648        TCGA-06-0649        TCGA-06-0650 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0686        TCGA-06-0743        TCGA-06-0744        TCGA-06-0745 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0747        TCGA-06-0749        TCGA-06-0750        TCGA-06-0875 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0876        TCGA-06-0877        TCGA-06-0878        TCGA-06-0879 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-0881        TCGA-06-0882        TCGA-06-0939        TCGA-06-1084 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-1086        TCGA-06-1087        TCGA-06-1800        TCGA-06-1801 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-1802        TCGA-06-1804        TCGA-06-1805        TCGA-06-2557 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-2558        TCGA-06-2559        TCGA-06-2561        TCGA-06-2562 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-2563        TCGA-06-2564        TCGA-06-2565        TCGA-06-2566 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-2567        TCGA-06-2569        TCGA-06-2570        TCGA-06-5408 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-06-5410        TCGA-06-5411        TCGA-06-5412        TCGA-06-5413 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-5414        TCGA-06-5415        TCGA-06-5416        TCGA-06-5418 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-5856        TCGA-06-5858        TCGA-06-5859        TCGA-06-6388 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-6389        TCGA-06-6390        TCGA-06-6391        TCGA-06-6693 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-6694        TCGA-06-6695        TCGA-06-6697        TCGA-06-6698 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-06-6699        TCGA-06-6700        TCGA-06-6701        TCGA-08-0244 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0245        TCGA-08-0246        TCGA-08-0344        TCGA-08-0345 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0346        TCGA-08-0347        TCGA-08-0348        TCGA-08-0349 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0350        TCGA-08-0351        TCGA-08-0352        TCGA-08-0353 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0354        TCGA-08-0355        TCGA-08-0356        TCGA-08-0357 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0358        TCGA-08-0359        TCGA-08-0375        TCGA-08-0380 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0386        TCGA-08-0389        TCGA-08-0390        TCGA-08-0392 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0509        TCGA-08-0510        TCGA-08-0512        TCGA-08-0514 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0516        TCGA-08-0517        TCGA-08-0518        TCGA-08-0520 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0521        TCGA-08-0524        TCGA-08-0525        TCGA-08-0529 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-08-0531        TCGA-12-0615        TCGA-12-0616        TCGA-12-0618 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0619        TCGA-12-0620        TCGA-12-0653        TCGA-12-0654 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0656        TCGA-12-0657        TCGA-12-0662        TCGA-12-0670 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0688        TCGA-12-0691        TCGA-12-0692        TCGA-12-0703 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0707        TCGA-12-0769        TCGA-12-0772        TCGA-12-0773 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0775        TCGA-12-0776        TCGA-12-0778        TCGA-12-0780 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0818        TCGA-12-0819        TCGA-12-0820        TCGA-12-0821 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0822        TCGA-12-0826        TCGA-12-0827        TCGA-12-0828 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-0829        TCGA-12-1088        TCGA-12-1089        TCGA-12-1090 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-1091        TCGA-12-1092        TCGA-12-1093        TCGA-12-1094 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-1095        TCGA-12-1096        TCGA-12-1097        TCGA-12-1098 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-1099        TCGA-12-1598        TCGA-12-1599        TCGA-12-1600 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-1602        TCGA-12-3644        TCGA-12-3646        TCGA-12-3648 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-3649        TCGA-12-3650        TCGA-12-3651        TCGA-12-3652 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-12-3653        TCGA-12-5295        TCGA-12-5299        TCGA-12-5301 
      "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-0736        TCGA-14-0740        TCGA-14-0781        TCGA-14-0783 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-0786        TCGA-14-0787        TCGA-14-0789        TCGA-14-0790 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-0812        TCGA-14-0813        TCGA-14-0817        TCGA-14-0862 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-0865        TCGA-14-0866        TCGA-14-0867        TCGA-14-0871 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1034        TCGA-14-1037        TCGA-14-1043        TCGA-14-1395 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1396        TCGA-14-1401        TCGA-14-1402        TCGA-14-1450 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1451        TCGA-14-1452        TCGA-14-1453        TCGA-14-1454 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-14-1455        TCGA-14-1456        TCGA-14-1458        TCGA-14-1459 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1794        TCGA-14-1795        TCGA-14-1821        TCGA-14-1823 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-1825        TCGA-14-1827        TCGA-14-1829        TCGA-14-2554 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-14-2555        TCGA-14-3477        TCGA-14-4157        TCGA-15-0742 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-15-1446        TCGA-15-1447        TCGA-15-1449        TCGA-16-0846 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-16-0848        TCGA-16-0849        TCGA-16-0850        TCGA-16-0861 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-16-1045        TCGA-16-1047        TCGA-16-1055        TCGA-16-1056 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-16-1060        TCGA-16-1062        TCGA-16-1063        TCGA-16-1460 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-0955        TCGA-19-0957        TCGA-19-0960        TCGA-19-0962 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-0963        TCGA-19-0964        TCGA-19-1385        TCGA-19-1386 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-1387        TCGA-19-1388        TCGA-19-1389        TCGA-19-1390 
"XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-1392        TCGA-19-1786        TCGA-19-1787        TCGA-19-1789 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-1791        TCGA-19-2619        TCGA-19-2620        TCGA-19-2621 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-2623        TCGA-19-2624        TCGA-19-2625        TCGA-19-2629 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-2631        TCGA-19-4065        TCGA-19-5947        TCGA-19-5950 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-19-5951        TCGA-19-5952        TCGA-19-5953        TCGA-19-5954 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-5955        TCGA-19-5956        TCGA-19-5958        TCGA-19-5959 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-19-5960        TCGA-26-1438        TCGA-26-1439        TCGA-26-1440 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" 
       TCGA-26-1442        TCGA-26-1443        TCGA-26-1799        TCGA-26-5132 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-26-5133        TCGA-26-5134        TCGA-26-5135        TCGA-26-5136 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-26-5139        TCGA-26-6173        TCGA-26-6174        TCGA-27-1830 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-1831        TCGA-27-1832        TCGA-27-1833        TCGA-27-1834 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-1835        TCGA-27-1836        TCGA-27-1837        TCGA-27-1838 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-2518        TCGA-27-2519        TCGA-27-2521        TCGA-27-2523 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-27-2524        TCGA-27-2526        TCGA-27-2527        TCGA-27-2528 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-1746        TCGA-28-1747        TCGA-28-1749        TCGA-28-1750 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-1751        TCGA-28-1752        TCGA-28-1753        TCGA-28-1755 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-1756        TCGA-28-1757        TCGA-28-2502        TCGA-28-2506 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-2509        TCGA-28-2513        TCGA-28-2514        TCGA-28-5204 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-5207        TCGA-28-5208        TCGA-28-5209        TCGA-28-5211 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-5213        TCGA-28-5214        TCGA-28-5215        TCGA-28-5216 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-28-5218        TCGA-28-5219        TCGA-28-5220        TCGA-28-6450 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-1970        TCGA-32-1973        TCGA-32-1976        TCGA-32-1977 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-1978        TCGA-32-1979        TCGA-32-1980        TCGA-32-1982 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-1986        TCGA-32-1987        TCGA-32-1991        TCGA-32-2491 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-2494        TCGA-32-2495        TCGA-32-2615        TCGA-32-2616 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-2632        TCGA-32-2634        TCGA-32-2638        TCGA-32-4208 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-4210        TCGA-32-4211        TCGA-32-4213        TCGA-32-4719 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-32-5222        TCGA-41-2571        TCGA-41-2572        TCGA-41-2573 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-41-2575        TCGA-41-3392        TCGA-41-3393        TCGA-41-3915 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-41-4097        TCGA-41-5651        TCGA-41-6646        TCGA-74-6573 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-74-6575        TCGA-74-6577        TCGA-74-6578        TCGA-74-6581 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-74-6584        TCGA-76-4925        TCGA-76-4926        TCGA-76-4928 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"       "XQ LOSS CNV" "XQ LOSS WILD-TYPE" 
       TCGA-76-4929        TCGA-76-4931        TCGA-76-4934        TCGA-76-4935 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-76-6191        TCGA-76-6192        TCGA-76-6193        TCGA-76-6280 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-76-6282        TCGA-76-6285        TCGA-76-6286        TCGA-76-6656 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-76-6657        TCGA-76-6661        TCGA-76-6662        TCGA-76-6663 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-76-6664        TCGA-81-5910        TCGA-81-5911        TCGA-87-5896 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D79V2, continuous
D79V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS CNV          5    6
  XQ LOSS WILD-TYPE  213  328
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  FEMALE           5               213
  MALE             6               328
D79V4, continuous
                   vv
clus                GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  XQ LOSS CNV                                   0                   0
  XQ LOSS WILD-TYPE                             8                  18
                   vv
clus                UNTREATED PRIMARY (DE NOVO) GBM
  XQ LOSS CNV                                    11
  XQ LOSS WILD-TYPE                             515
D79V5, multiclass
                                 clus
vv                                XQ LOSS CNV XQ LOSS WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             0                 8
  TREATED PRIMARY GBM                       0                18
  UNTREATED PRIMARY (DE NOVO) GBM          11               515
D79V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS CNV          9    2
  XQ LOSS WILD-TYPE  372  169
     clus
vv    XQ LOSS CNV XQ LOSS WILD-TYPE
  NO            9               372
  YES           2               169
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
> q(save="no")
