Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	GBM-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	broad_values_by_arm.mutsig.cluster.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	GBM-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	table.1.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	GBM-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	D13V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	GBM-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	D12V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	GBM-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	D19V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	GBM-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	D14V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	GBM-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	D58V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	GBM-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	D11V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	GBM-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	D58V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	GBM-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	D58V5.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	GBM-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	D19V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	GBM-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	D59V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	GBM-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
Correlate_Clinical_Cnvsarms_onlysig:clinical.info.file	GBM-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	broad_values_by_arm.mutsig.cluster.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	table.1.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	D13V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	D12V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	D19V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	D14V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	D58V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	D11V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	D58V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	D58V5.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	D19V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	D59V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
cnvarms2cluster:sample.gene.table.file	broad_values_by_arm.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00500:44	Correlate_Clinical_vs_CopyNumber_Arm_2013052300	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_GBM-TP.Correlate_Clinical_vs_CopyNumber_Arm.Level_4.2013052300.0.0	yes
