
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.85.4149/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.85.4149/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/GBM-TP/3536987/GBM-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/GBM-TP/3351055/GBM-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=574, in cluster file=584, common to both=573
[1]  10 573
[1] "MRNA_CNMF"
[1] 3
  1   2   3   4 
154  94 156 119 
  1   2   3   4 
154  94 156 119 
[1] "MRNA_CHIERARCHICAL"
[1] 3
  1   2   3 
131 172 220 
  1   2   3 
131 172 220 
[1] "MIR_CNMF"
[1] 3
  1   2   3   4 
146 159  76 107 
  1   2   3   4 
146 159  76 107 
[1] "MIR_CHIERARCHICAL"
[1] 3
  1   2   3 
173 181 134 
  1   2   3 
173 181 134 
[1] "CN_CNMF"
[1] 3
  1   2   3 
159 212 181 
  1   2   3 
159 212 181 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3  4 
35 27 17 27 
 1  2  3  4 
35 27 17 27 
[1] "RPPA_CNMF"
[1] 3
 1  2  3  4 
57 60 44 49 
 1  2  3  4 
57 60 44 49 
[1] "RPPA_CHIERARCHICAL"
[1] 3
  1   2   3 
 64  35 111 
  1   2   3 
 64  35 111 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3 
46 70 35 
 1  2  3 
46 70 35 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
69 22 60 
 1  2  3 
69 22 60 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "KARNOFSKYPERFORMANCESCORE"             
[10] "HISTOLOGICALTYPE"                      
[11] "RADIATIONS.RADIATION.REGIMENINDICATION"
[12] "BATCHNUMBER"                           

Input Data has 12 rows and 573 columns.

[1] "Batch" "12"   
[1] "Last Follow UP"
TCGA-02-0001 TCGA-02-0003 TCGA-02-0004 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 
         278          144          345          558          705          322 
TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 
        1077          630         2511          627         1699         2361 
TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 
         612         1614         1300          748          315         2755 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 
          86          430          109          326          320          556 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 
         208          447           97          458          383          199 
TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 
          76          604          254          291          183          600 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
         804          873          762          167          310          634 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
         828         2729          691            7         1560          268 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 
        1757          515          106          821         1977          355 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
         537          704         2817         3040          476         1489 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
         503          514          538          327          440          121 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
         422          432          485          372          300          234 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
         323            5          484          782          133          764 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0439 
         322          377          441          321         1433           20 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
         345          281          492          102          511          393 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
         465          469          492           NA            8          123 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
        1439            3          108          691          988          320 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
         570          428          701          674          327           NA 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
         280           NA          357           71          611          508 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
         298          238           NA           NA          359          389 
TCGA-06-0155 TCGA-06-0156 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
         263          164           97          166           NA           NA 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 
          78         1729           NA          161           NA          579 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
          95          396            7           67           83         1561 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
          60         1642          578           77         1228         1126 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
         801          866          454          313          556          142 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
         214           79           12          196          166          118 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
         151          360            6          378          684           10 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0394 TCGA-06-0397 
         548          314          359          455          313          168 
TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 TCGA-06-0414 
           8         2145          142          245            5         1065 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
         375           98          136          293           62          717 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
         285          678          594          163           82           65 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
          28          279          271          204          218          699 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
         178          165          637          226          193          109 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 
         815          263          239          413          127           33 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
          23          149          282           86          259          181 
TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
         207          182          133           13          285          341 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
         107          254          138          268          273          260 
TCGA-06-5416 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
         204          155           83          114          186          138 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
         119          236          163           44           15          224 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
         252          391          145           47          145          151 
TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 
         690         1057          119         3310           53          132 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 
         419          316          231          103         1636           39 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 
         195          458          685          447         1084          593 
TCGA-08-0359 TCGA-08-0360 TCGA-08-0373 TCGA-08-0375 TCGA-08-0380 TCGA-08-0385 
          29          352          134          279          330           31 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 
         478           97          322            9           17          106 
TCGA-08-0511 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 
         235          358          259          561         1770           39 
TCGA-08-0520 TCGA-08-0521 TCGA-08-0522 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 
         326          146          555          198          486          526 
TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 
         168          426          438           49          316          181 
TCGA-12-0653 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
          NA          218         2004            3         1161          790 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
         734          185           80          550           NA          378 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
        1615         1311          167          277          451          434 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
        2790          753          562          323          715          845 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
        1179          271          626         3880          177          189 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
         929          658          364          346          482          277 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1597 TCGA-12-1598 TCGA-12-1599 
         442          121          103          427          287          769 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
         414          194         1807         1314          784          351 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
         333          358         1050          357          398           98 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
          61          459          364           29          188          701 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
          68          342          418           99           41          164 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 
          88          502          801           62          879          485 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
         587           24           42           34          114          974 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
        1788          703          216           35          917           28 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
        1245          186          378           30           59          540 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
         542          232          179          217          532          242 
TCGA-14-3476 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 
          12          114          103          300          581         1618 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 
         167          119          302          793          496          130 
TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
         882           25          301          406          111          556 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 
         425          195          358          665          262           13 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 
         434          103          327          276          181          394 
TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1788 
         141          772          106          217          385          111 
TCGA-19-1789 TCGA-19-1790 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
          99          153            4          294          148           33 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4065 
         229            5          124          501          213          214 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
         136          202          343          244          567          144 
TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
         242           54          198          164          161          165 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 TCGA-26-1799 
         305          422          296          953          216          285 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
         286          452          167          269           37           48 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
         241           70          146          504           NA          555 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
        1008          648          914          427          350          752 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
         316          316          489          231           87          438 
TCGA-27-2528 TCGA-28-1745 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
         479          344            6           77          279          253 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
         231          257           36           46           86            4 
TCGA-28-1760 TCGA-28-2499 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2513 
         143           94           20          205          145          222 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
         160          119          275          473           77          358 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
         298          432          237          415          128          259 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
         319          165          467          641           15            3 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
         482          593           36          142          386          451 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 
         515          372          632          456          485          223 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
         269          270          224          400          338          112 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
         383          356          330          165           26          406 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
         272          290           30          135          183            6 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
         351          235          105          533          131          436 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 
         250          227          145          138          535           94 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
         111          278         1458           77          328          507 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
         100           82          346          519          253          637 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
         147          153            7          281          234          236 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
          49          538            2 
Variable 1:'AGE':	nDistinctValues=72,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=348,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=406,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=23,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'BATCH.NUMBER':	nDistinctValues=18,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "GENDER"                                
[3] "KARNOFSKY.PERFORMANCE.SCORE"           
[4] "HISTOLOGICAL.TYPE"                     
[5] "RADIATIONS.RADIATION.REGIMENINDICATION"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 573 columns, 1 survival variables, and 5 non-survival variables.
AGE, nv=72, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=7, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2        0   1
  subtype1  26 128
  subtype2  23  71
  subtype3  39 117
  subtype4  28  91
subtype1 subtype2 subtype3 subtype4 
     154       94      156      119 
subtype1 subtype2 subtype3 subtype4 
     128       71      117       91 
$subtype1
TCGA-02-0001 TCGA-02-0003 TCGA-02-0004 TCGA-02-0009 TCGA-02-0025 TCGA-02-0027 
        9.14         4.73        11.34        10.59        42.74        10.36 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       90.58         2.83        14.14        10.52        18.28         6.84 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       15.06        12.59         6.54        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0075 TCGA-02-0079 TCGA-02-0086 TCGA-02-0089 
        6.02        19.73        20.84        27.22         8.81        16.93 
TCGA-02-0099 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0337 TCGA-02-0456 
        3.48        11.67        17.65        23.15        25.12         3.35 
TCGA-02-2470 TCGA-02-2486 TCGA-06-0122 TCGA-06-0124 TCGA-06-0130 TCGA-06-0139 
       12.92        16.18         0.26         4.04        10.52        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0143 TCGA-06-0147 TCGA-06-0149 TCGA-06-0152 
        0.20         9.21        11.74        16.70         7.82        11.80 
TCGA-06-0155 TCGA-06-0156 TCGA-06-0164 TCGA-06-0168 TCGA-06-0169 TCGA-06-0175 
        8.65         5.39        56.84        19.04         3.12         2.73 
TCGA-06-0176 TCGA-06-0184 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       51.32        40.37        14.93        10.29        18.28         4.67 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0210 TCGA-06-0213 TCGA-06-0397 
        2.60         0.39         6.44         4.96         0.20         5.52 
TCGA-06-0409 TCGA-06-0412 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0649 
       70.52         8.05        12.33         3.22         4.47         2.04 
TCGA-06-0650 TCGA-06-0750 TCGA-06-0881 TCGA-06-0939 TCGA-06-1084 TCGA-06-1800 
       23.57         0.92         5.85        20.94         7.43        26.79 
TCGA-06-1802 TCGA-06-2567 TCGA-06-5410 TCGA-06-5412 TCGA-06-5418 TCGA-08-0346 
        7.86         4.37         3.52         4.54         2.73         4.34 
TCGA-08-0352 TCGA-08-0360 TCGA-08-0373 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
        1.28        11.57         4.41        10.59         0.30         0.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0522 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 
        3.48        11.77        18.25        10.39         5.95         7.17 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0822 
       53.10        43.10         5.49         9.11        14.83        23.51 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1092 TCGA-12-1093 TCGA-12-1095 TCGA-12-1096 
       20.58       127.56        21.63        11.97        15.85         9.11 
TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 TCGA-14-0789 TCGA-14-0817 TCGA-14-1037 
       15.09         0.95         6.18        11.24         5.39        19.30 
TCGA-14-1396 TCGA-14-1452 TCGA-14-1823 TCGA-14-1829 TCGA-14-2554 TCGA-16-1045 
        1.12         7.10        17.82         7.13        17.49        29.00 
TCGA-16-1055 TCGA-16-1060 TCGA-19-1385 TCGA-19-1389 TCGA-19-1790 TCGA-19-2623 
        9.90         3.65        10.75         4.64         5.03         7.53 
TCGA-19-5947 TCGA-19-5955 TCGA-26-1438 TCGA-26-5139 TCGA-27-1830 TCGA-27-1832 
        6.64         1.78        10.03         1.58         4.80         9.86 
TCGA-27-2524 TCGA-27-2527 TCGA-28-1745 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        7.59        14.40        11.31         8.32         7.59         8.45 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-5207 TCGA-28-5209 TCGA-28-5215 
        0.66         4.77         7.30         9.04         2.53         7.79 
TCGA-32-1977 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-2491 TCGA-32-2494 
        0.10         4.67        12.69        14.83        12.23        20.78 
TCGA-32-2615 TCGA-32-2632 TCGA-32-4208 TCGA-32-4209 TCGA-32-4213 TCGA-41-3393 
       15.95         8.84        13.15        11.11        11.70         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-76-6193 TCGA-76-6282 
        6.02         0.20         2.70        17.06 

$subtype2
TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0021 
       23.18        35.41        20.71        82.55        20.61        77.62 
TCGA-02-0024 TCGA-02-0026 TCGA-02-0038 TCGA-02-0047 TCGA-02-0048 TCGA-02-0069 
       53.06        24.59        10.72        14.70         3.19        28.70 
TCGA-02-0074 TCGA-02-0104 TCGA-02-0114 TCGA-02-0116 TCGA-02-0266 TCGA-02-0271 
       10.19        65.00        99.95        48.95        17.69        14.47 
TCGA-02-0281 TCGA-02-0321 TCGA-02-0338 TCGA-02-0339 TCGA-02-2466 TCGA-02-2483 
        3.98         9.86        10.59        12.39        16.80        15.29 
TCGA-06-0174 TCGA-06-0177 TCGA-06-0241 TCGA-06-0410 TCGA-06-0413 TCGA-06-0414 
        2.20         1.97        14.96         4.67         0.16        35.01 
TCGA-06-0686 TCGA-06-0745 TCGA-06-0875 TCGA-06-1086 TCGA-06-1087 TCGA-06-2559 
        9.37         5.36         9.17         6.35         3.58         4.90 
TCGA-06-2569 TCGA-06-5413 TCGA-06-5416 TCGA-06-5858 TCGA-08-0245 TCGA-08-0344 
        0.43         8.81         6.71         6.12        34.75       108.82 
TCGA-08-0353 TCGA-08-0517 TCGA-08-0524 TCGA-12-0616 TCGA-12-0820 TCGA-12-0821 
        6.41        58.19         6.51        14.40        18.48        10.62 
TCGA-12-1598 TCGA-12-3644 TCGA-12-3646 TCGA-12-3650 TCGA-12-5301 TCGA-14-0865 
        9.44        59.41        43.20        10.95         2.01        16.50 
TCGA-14-0867 TCGA-14-0871 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1794 
        2.04        28.90         1.15        30.15         0.92         0.99 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-3477 TCGA-14-4157 TCGA-15-1449 
        1.94        17.75         7.63         3.75         3.39         5.49 
TCGA-16-0850 TCGA-19-1390 TCGA-19-1392 TCGA-19-1787 TCGA-19-2624 TCGA-19-5956 
       16.31        25.38         3.48        12.66         0.16         6.51 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-27-2521 TCGA-27-2523 
       14.86         5.49         8.84         1.22        10.39        16.08 
TCGA-28-1753 TCGA-28-5204 TCGA-28-5208 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 
        1.18         3.91        15.55         9.80        14.20        13.64 
TCGA-28-5218 TCGA-32-1973 TCGA-32-2616 TCGA-32-5222 TCGA-41-5651 TCGA-76-4929 
        4.21        21.07         7.33         5.42        11.54         3.65 
TCGA-76-4932 TCGA-76-4934 TCGA-76-6191 TCGA-76-6285 
       47.93         2.53        16.67         8.32 

$subtype3
TCGA-02-0016 TCGA-02-0023 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0083 
       55.86        20.12        26.43        25.05         5.49        22.72 
TCGA-02-0102 TCGA-02-0113 TCGA-02-0260 TCGA-02-0269 TCGA-02-0285 TCGA-02-0289 
       26.99        92.61        16.90        10.75        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0333 TCGA-02-0422 TCGA-02-0430 TCGA-02-2485 
       15.95        12.23         4.37        14.50        10.55        15.42 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0137 TCGA-06-0145 TCGA-06-0148 TCGA-06-0154 
       47.31         0.10        23.05         2.33         9.80        12.79 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0182 TCGA-06-0185 TCGA-06-0187 TCGA-06-0208 
        3.19         5.46         2.53        37.02        26.33         5.46 
TCGA-06-0211 TCGA-06-0216 TCGA-06-0394 TCGA-06-0402 TCGA-06-0743 TCGA-06-0744 
       11.84        22.49        10.29         0.26        22.29        19.53 
TCGA-06-0747 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-2562 
        2.70         8.91         6.71         7.17        22.98         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-5408 TCGA-06-5414 
        8.52         5.95         6.81         5.98        11.21         8.98 
TCGA-06-5415 TCGA-06-5856 TCGA-06-6390 TCGA-08-0244 TCGA-08-0246 TCGA-08-0354 
        8.55         3.75         5.36        22.68         3.91        15.06 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0375 TCGA-08-0386 
       22.52        14.70        35.64        19.50         9.17        15.72 
TCGA-08-0511 TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 TCGA-08-0521 TCGA-08-0525 
        7.73         8.52        18.44         1.28         4.80        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0656 TCGA-12-0657 TCGA-12-0688 TCGA-12-0692 
       17.29         5.52        65.88         0.10        24.13         2.63 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0780 TCGA-12-0826 TCGA-12-0828 TCGA-12-1090 
       18.08        28.37        14.27        27.78         8.91         6.21 
TCGA-12-1091 TCGA-12-1094 TCGA-12-1098 TCGA-12-1599 TCGA-12-1600 TCGA-12-3648 
       30.54        11.38         3.98        25.28        13.61        25.78 
TCGA-12-3649 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-14-0786 
       11.54        34.52        11.74        13.08         3.22        23.05 
TCGA-14-0787 TCGA-14-0790 TCGA-14-0866 TCGA-14-1034 TCGA-14-1402 TCGA-14-1459 
        2.24        13.74        26.33        15.95        32.02        12.43 
TCGA-14-2555 TCGA-15-0742 TCGA-15-1446 TCGA-16-1047 TCGA-16-1056 TCGA-16-1062 
        7.96         9.86        19.10         0.82        13.35        18.28 
TCGA-16-1063 TCGA-19-0955 TCGA-19-0962 TCGA-19-0964 TCGA-19-1386 TCGA-19-1786 
       13.97        11.77         0.43         3.39         9.07         7.13 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2625 
        3.25         0.13         9.67         4.87         1.08         4.08 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5954 
        7.00         4.47        11.28         8.02        18.64         7.96 
TCGA-19-5958 TCGA-19-5959 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 
        5.39         5.29        13.87         9.73         7.10         9.37 
TCGA-26-5132 TCGA-27-1831 TCGA-27-1833 TCGA-27-1835 TCGA-27-1837 TCGA-27-1838 
        9.40        16.57        18.25        21.30        14.04        11.51 
TCGA-27-2526 TCGA-27-2528 TCGA-28-1749 TCGA-28-1755 TCGA-28-1757 TCGA-28-1760 
        2.86        15.75         9.17         1.51         0.13         4.70 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1978 TCGA-32-1979 
        8.52        10.49         5.42        15.35        15.85        19.50 
TCGA-32-1991 TCGA-32-2495 TCGA-32-2638 TCGA-32-4719 TCGA-41-2572 TCGA-41-3392 
       16.93        14.99         7.36        10.85        13.35         0.99 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4931 TCGA-81-5910 TCGA-87-5896 
        4.54        17.59         3.09         9.14         1.61         0.07 

$subtype4
TCGA-02-0080 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0115 TCGA-02-0258 
       89.72         0.23        51.29        57.76        15.65        16.54 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0432 
        7.69        10.62         0.16        15.91        25.71        47.11 
TCGA-02-0439 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-06-0127 TCGA-06-0128 
        0.66        11.34         9.24        16.18         3.55        22.72 
TCGA-06-0129 TCGA-06-0132 TCGA-06-0133 TCGA-06-0138 TCGA-06-0142 TCGA-06-0146 
       32.48        18.74        14.07        22.16         2.20        20.09 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0166 TCGA-06-0167 TCGA-06-0171 TCGA-06-0173 
       11.80         2.56         5.29        11.41        13.02         0.23 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0188 TCGA-06-0195 TCGA-06-0214 TCGA-06-0219 
       53.98        19.00        28.47         7.04        12.43         0.33 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0648 TCGA-06-0749 TCGA-06-0882 
       18.02        10.32        11.80         9.63         2.14         5.42 
TCGA-06-1801 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2561 
        8.65        13.58         4.18         1.08         0.76         9.27 
TCGA-06-2570 TCGA-06-5411 TCGA-06-5417 TCGA-06-5859 TCGA-06-6389 TCGA-06-6391 
        9.37         8.35         5.10         4.54         7.76         1.45 
TCGA-08-0345 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
        1.74        13.78        10.39         7.59         3.39        53.79 
TCGA-08-0359 TCGA-08-0380 TCGA-08-0385 TCGA-08-0389 TCGA-08-0520 TCGA-12-0618 
        0.95        10.85         1.02         3.19        10.72         1.61 
TCGA-12-0670 TCGA-12-0818 TCGA-12-0819 TCGA-12-0827 TCGA-12-1089 TCGA-12-1097 
       25.97        91.73        24.76        38.76         5.82        14.53 
TCGA-12-1099 TCGA-12-1597 TCGA-12-1602 TCGA-12-3651 TCGA-14-0812 TCGA-14-0813 
        3.39        14.04         6.38        11.77         3.25         1.35 
TCGA-14-1401 TCGA-14-1451 TCGA-14-1456 TCGA-14-1458 TCGA-14-1827 TCGA-14-3476 
        3.75        23.11        40.93         6.12         5.88         0.39 
TCGA-15-1447 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0861 TCGA-16-1460 
       53.19         3.91         9.93        26.07         4.27         6.41 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0963 TCGA-19-1387 TCGA-19-1388 TCGA-19-1788 
       21.86         8.61        14.27         5.95        12.95         3.65 
TCGA-19-2629 TCGA-19-5960 TCGA-26-1442 TCGA-27-1834 TCGA-27-1836 TCGA-27-2518 
       16.47         5.42        31.33        33.14        30.05        24.72 
TCGA-27-2519 TCGA-28-1746 TCGA-28-1747 TCGA-28-1756 TCGA-28-2506 TCGA-28-2514 
       10.39         0.20         2.53         2.83         6.74         5.26 
TCGA-32-1976 TCGA-32-1980 TCGA-32-2634 TCGA-32-4210 TCGA-32-4211 TCGA-41-2571 
        0.49         1.18         8.88         3.68        12.59         0.85 
TCGA-41-2573 TCGA-41-2575 TCGA-76-4925 TCGA-76-4935 TCGA-76-6192 
        8.94         9.53         4.77        10.78         3.29 

subtype1 subtype2 subtype3 subtype4 
    0.10     0.16     0.07     0.16 
subtype1 subtype2 subtype3 subtype4 
  127.56   108.82    92.61    91.73 
subtype1 subtype2 subtype3 subtype4 
    9.11    10.49    10.80     9.27 
[1] "0.1 - 127.6 (9.1)"  "0.2 - 108.8 (10.5)" "0.1 - 92.6 (10.8)" 
[4] "0.2 - 91.7 (9.3)"  
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype2" "subtype1" "subtype1" "subtype4" "subtype3"
 [43] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype4" "subtype2" "subtype4" "subtype3" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [67] "subtype3" "subtype2" "subtype4" "subtype4" "subtype4" "subtype4"
 [73] "subtype4" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [91] "subtype1" "subtype1" "subtype3" "subtype3" "subtype4" "subtype4"
 [97] "subtype4" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
[103] "subtype1" "subtype1" "subtype1" "subtype4" "subtype1" "subtype3"
[109] "subtype4" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[115] "subtype1" "subtype1" "subtype3" "subtype3" "subtype4" "subtype4"
[121] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype4"
[127] "subtype4" "subtype2" "subtype1" "subtype1" "subtype2" "subtype4"
[133] "subtype4" "subtype3" "subtype1" "subtype3" "subtype3" "subtype4"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
[145] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[151] "subtype4" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
[157] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[163] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[169] "subtype4" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype4" "subtype1" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype1" "subtype4" "subtype1"
[187] "subtype1" "subtype2" "subtype2" "subtype1" "subtype4" "subtype1"
[193] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype4"
[199] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[205] "subtype2" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
[211] "subtype2" "subtype3" "subtype3" "subtype2" "subtype4" "subtype1"
[217] "subtype3" "subtype2" "subtype4" "subtype4" "subtype3" "subtype4"
[223] "subtype3" "subtype2" "subtype3" "subtype2" "subtype4" "subtype1"
[229] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype1"
[235] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[241] "subtype4" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
[247] "subtype3" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[253] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[259] "subtype4" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[265] "subtype3" "subtype2" "subtype4" "subtype1" "subtype1" "subtype1"
[271] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype3"
[277] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[283] "subtype3" "subtype4" "subtype4" "subtype2" "subtype2" "subtype1"
[289] "subtype3" "subtype4" "subtype3" "subtype1" "subtype1" "subtype4"
[295] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[301] "subtype1" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
[307] "subtype3" "subtype3" "subtype4" "subtype2" "subtype2" "subtype3"
[313] "subtype3" "subtype2" "subtype4" "subtype3" "subtype3" "subtype3"
[319] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[325] "subtype3" "subtype1" "subtype3" "subtype4" "subtype4" "subtype1"
[331] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[337] "subtype1" "subtype4" "subtype3" "subtype4" "subtype1" "subtype2"
[343] "subtype2" "subtype2" "subtype4" "subtype4" "subtype3" "subtype2"
[349] "subtype2" "subtype2" "subtype1" "subtype2" "subtype4" "subtype1"
[355] "subtype1" "subtype3" "subtype4" "subtype2" "subtype2" "subtype3"
[361] "subtype3" "subtype4" "subtype2" "subtype4" "subtype4" "subtype4"
[367] "subtype2" "subtype4" "subtype1" "subtype3" "subtype1" "subtype3"
[373] "subtype1" "subtype3" "subtype3" "subtype4" "subtype3" "subtype4"
[379] "subtype4" "subtype3" "subtype4" "subtype3" "subtype1" "subtype3"
[385] "subtype4" "subtype4" "subtype1" "subtype2" "subtype2" "subtype3"
[391] "subtype2" "subtype4" "subtype3" "subtype1" "subtype3" "subtype3"
[397] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype4"
[403] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[409] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype4"
[415] "subtype1" "subtype3" "subtype3" "subtype4" "subtype3" "subtype3"
[421] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[427] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype3"
[433] "subtype4" "subtype3" "subtype3" "subtype4" "subtype4" "subtype2"
[439] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[445] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[451] "subtype2" "subtype3" "subtype4" "subtype3" "subtype3" "subtype1"
[457] "subtype4" "subtype1" "subtype1" "subtype4" "subtype2" "subtype1"
[463] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[469] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[475] "subtype4" "subtype1" "subtype3" "subtype3" "subtype4" "subtype1"
[481] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[487] "subtype1" "subtype2" "subtype1" "subtype4" "subtype3" "subtype1"
[493] "subtype1" "subtype4" "subtype4" "subtype1" "subtype3" "subtype2"
[499] "subtype4" "subtype3" "subtype4" "subtype4" "subtype3" "subtype1"
[505] "subtype1" "subtype1" "subtype2" "subtype4" "subtype3" "subtype3"
[511] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype4"
[517] "subtype2" "subtype4" "subtype1" "subtype1" "subtype2" "subtype3"
[523] "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype2" "subtype1" "subtype1" "subtype4" "subtype3"
 [43] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype4" "subtype2" "subtype4" "subtype3" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [67] "subtype3" "subtype2" "subtype4" "subtype4" "subtype4" "subtype4"
 [73] "subtype4" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [91] "subtype1" "subtype1" "subtype3" "subtype3" "subtype4" "subtype4"
 [97] "subtype4" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
[103] "subtype1" "subtype1" "subtype1" "subtype4" "subtype1" "subtype3"
[109] "subtype4" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[115] "subtype1" "subtype1" "subtype3" "subtype3" "subtype4" "subtype4"
[121] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype4"
[127] "subtype4" "subtype2" "subtype1" "subtype1" "subtype2" "subtype4"
[133] "subtype4" "subtype3" "subtype1" "subtype3" "subtype3" "subtype4"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
[145] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[151] "subtype4" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
[157] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[163] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[169] "subtype4" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype4" "subtype1" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype1" "subtype4" "subtype1"
[187] "subtype1" "subtype2" "subtype2" "subtype1" "subtype4" "subtype1"
[193] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype4"
[199] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[205] "subtype2" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
[211] "subtype2" "subtype3" "subtype3" "subtype2" "subtype4" "subtype1"
[217] "subtype3" "subtype2" "subtype4" "subtype4" "subtype3" "subtype4"
[223] "subtype3" "subtype2" "subtype3" "subtype2" "subtype4" "subtype1"
[229] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype1"
[235] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[241] "subtype4" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
[247] "subtype3" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[253] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[259] "subtype4" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[265] "subtype3" "subtype2" "subtype4" "subtype1" "subtype1" "subtype1"
[271] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype3"
[277] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[283] "subtype3" "subtype4" "subtype4" "subtype2" "subtype2" "subtype1"
[289] "subtype3" "subtype4" "subtype3" "subtype1" "subtype1" "subtype4"
[295] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[301] "subtype1" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
[307] "subtype3" "subtype3" "subtype4" "subtype2" "subtype2" "subtype3"
[313] "subtype3" "subtype2" "subtype4" "subtype3" "subtype3" "subtype3"
[319] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[325] "subtype3" "subtype1" "subtype3" "subtype4" "subtype4" "subtype1"
[331] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[337] "subtype1" "subtype4" "subtype3" "subtype4" "subtype1" "subtype2"
[343] "subtype2" "subtype2" "subtype4" "subtype4" "subtype3" "subtype2"
[349] "subtype2" "subtype2" "subtype1" "subtype2" "subtype4" "subtype1"
[355] "subtype1" "subtype3" "subtype4" "subtype2" "subtype2" "subtype3"
[361] "subtype3" "subtype4" "subtype2" "subtype4" "subtype4" "subtype4"
[367] "subtype2" "subtype4" "subtype1" "subtype3" "subtype1" "subtype3"
[373] "subtype1" "subtype3" "subtype3" "subtype4" "subtype3" "subtype4"
[379] "subtype4" "subtype3" "subtype4" "subtype3" "subtype1" "subtype3"
[385] "subtype4" "subtype4" "subtype1" "subtype2" "subtype2" "subtype3"
[391] "subtype2" "subtype4" "subtype3" "subtype1" "subtype3" "subtype3"
[397] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype4"
[403] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[409] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype4"
[415] "subtype1" "subtype3" "subtype3" "subtype4" "subtype3" "subtype3"
[421] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[427] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype3"
[433] "subtype4" "subtype3" "subtype3" "subtype4" "subtype4" "subtype2"
[439] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[445] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[451] "subtype2" "subtype3" "subtype4" "subtype3" "subtype3" "subtype1"
[457] "subtype4" "subtype1" "subtype1" "subtype4" "subtype2" "subtype1"
[463] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[469] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[475] "subtype4" "subtype1" "subtype3" "subtype3" "subtype4" "subtype1"
[481] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[487] "subtype1" "subtype2" "subtype1" "subtype4" "subtype3" "subtype1"
[493] "subtype1" "subtype4" "subtype4" "subtype1" "subtype3" "subtype2"
[499] "subtype4" "subtype3" "subtype4" "subtype4" "subtype3" "subtype1"
[505] "subtype1" "subtype1" "subtype2" "subtype4" "subtype3" "subtype3"
[511] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype4"
[517] "subtype2" "subtype4" "subtype1" "subtype1" "subtype2" "subtype3"
[523] "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype2" "subtype1" "subtype1" "subtype4" "subtype3"
 [43] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype4" "subtype2" "subtype4" "subtype3" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [67] "subtype3" "subtype2" "subtype4" "subtype4" "subtype4" "subtype4"
 [73] "subtype4" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [91] "subtype1" "subtype1" "subtype3" "subtype3" "subtype4" "subtype4"
 [97] "subtype4" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
[103] "subtype1" "subtype1" "subtype1" "subtype4" "subtype1" "subtype3"
[109] "subtype4" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[115] "subtype1" "subtype1" "subtype3" "subtype3" "subtype4" "subtype4"
[121] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype4"
[127] "subtype4" "subtype2" "subtype1" "subtype1" "subtype2" "subtype4"
[133] "subtype4" "subtype3" "subtype1" "subtype3" "subtype3" "subtype4"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
[145] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[151] "subtype4" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
[157] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[163] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[169] "subtype4" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype4" "subtype1" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype1" "subtype4" "subtype1"
[187] "subtype1" "subtype2" "subtype2" "subtype1" "subtype4" "subtype1"
[193] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype4"
[199] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[205] "subtype2" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
[211] "subtype2" "subtype3" "subtype3" "subtype2" "subtype4" "subtype1"
[217] "subtype3" "subtype2" "subtype4" "subtype4" "subtype3" "subtype4"
[223] "subtype3" "subtype2" "subtype3" "subtype2" "subtype4" "subtype1"
[229] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype1"
[235] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[241] "subtype4" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
[247] "subtype3" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[253] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[259] "subtype4" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[265] "subtype3" "subtype2" "subtype4" "subtype1" "subtype1" "subtype1"
[271] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype3"
[277] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[283] "subtype3" "subtype4" "subtype4" "subtype2" "subtype2" "subtype1"
[289] "subtype3" "subtype4" "subtype3" "subtype1" "subtype1" "subtype4"
[295] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[301] "subtype1" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
[307] "subtype3" "subtype3" "subtype4" "subtype2" "subtype2" "subtype3"
[313] "subtype3" "subtype2" "subtype4" "subtype3" "subtype3" "subtype3"
[319] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[325] "subtype3" "subtype1" "subtype3" "subtype4" "subtype4" "subtype1"
[331] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[337] "subtype1" "subtype4" "subtype3" "subtype4" "subtype1" "subtype2"
[343] "subtype2" "subtype2" "subtype4" "subtype4" "subtype3" "subtype2"
[349] "subtype2" "subtype2" "subtype1" "subtype2" "subtype4" "subtype1"
[355] "subtype1" "subtype3" "subtype4" "subtype2" "subtype2" "subtype3"
[361] "subtype3" "subtype4" "subtype2" "subtype4" "subtype4" "subtype4"
[367] "subtype2" "subtype4" "subtype1" "subtype3" "subtype1" "subtype3"
[373] "subtype1" "subtype3" "subtype3" "subtype4" "subtype3" "subtype4"
[379] "subtype4" "subtype3" "subtype4" "subtype3" "subtype1" "subtype3"
[385] "subtype4" "subtype4" "subtype1" "subtype2" "subtype2" "subtype3"
[391] "subtype2" "subtype4" "subtype3" "subtype1" "subtype3" "subtype3"
[397] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype4"
[403] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[409] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype4"
[415] "subtype1" "subtype3" "subtype3" "subtype4" "subtype3" "subtype3"
[421] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[427] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype3"
[433] "subtype4" "subtype3" "subtype3" "subtype4" "subtype4" "subtype2"
[439] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[445] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[451] "subtype2" "subtype3" "subtype4" "subtype3" "subtype3" "subtype1"
[457] "subtype4" "subtype1" "subtype1" "subtype4" "subtype2" "subtype1"
[463] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[469] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[475] "subtype4" "subtype1" "subtype3" "subtype3" "subtype4" "subtype1"
[481] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[487] "subtype1" "subtype2" "subtype1" "subtype4" "subtype3" "subtype1"
[493] "subtype1" "subtype4" "subtype4" "subtype1" "subtype3" "subtype2"
[499] "subtype4" "subtype3" "subtype4" "subtype4" "subtype3" "subtype1"
[505] "subtype1" "subtype1" "subtype2" "subtype4" "subtype3" "subtype3"
[511] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype4"
[517] "subtype2" "subtype4" "subtype1" "subtype1" "subtype2" "subtype3"
[523] "subtype3"
D1V2, continuous
D1V3, binary
          cls
clus        0  1
  subtype1 59 95
  subtype2 39 55
  subtype3 67 89
  subtype4 40 79
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   59   95
  subtype2   39   55
  subtype3   67   89
  subtype4   40   79
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       59       39       67       40
  MALE         95       55       89       79
D1V4, continuous
          vv
clus       GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  subtype1                             1                   8
  subtype2                             0                   7
  subtype3                             0                   4
  subtype4                             3                   1
          vv
clus       UNTREATED PRIMARY (DE NOVO) GBM
  subtype1                             145
  subtype2                              87
  subtype3                             152
  subtype4                             115
D1V5, multiclass
D1V6, binary
          cls
clus         0   1
  subtype1 105  49
  subtype2  64  30
  subtype3 116  40
  subtype4  73  46
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  105   49
  subtype2   64   30
  subtype3  116   40
  subtype4   73   46
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO       105       64      116       73
  YES       49       30       40       46

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2        0   1
  subtype1  36  95
  subtype2  40 132
  subtype3  40 180
subtype1 subtype2 subtype3 
     131      172      220 
subtype1 subtype2 subtype3 
      95      132      180 
$subtype1
TCGA-02-0016 TCGA-02-0023 TCGA-02-0113 TCGA-02-0115 TCGA-02-0260 TCGA-02-0269 
       55.86        20.12        92.61        15.65        16.90        10.75 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0333 TCGA-02-0422 
       13.87        14.20        15.95        12.23         4.37        14.50 
TCGA-02-0430 TCGA-02-2485 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0148 
       10.55        15.42        47.31         0.10         3.55         9.80 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0187 TCGA-06-0211 TCGA-06-0216 TCGA-06-0743 
        3.19         5.46        26.33        11.84        22.49        22.29 
TCGA-06-0744 TCGA-06-0747 TCGA-06-0876 TCGA-06-0877 TCGA-06-0879 TCGA-06-1804 
       19.53         2.70         8.91         6.71        22.98        13.58 
TCGA-06-2557 TCGA-06-2561 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 
        1.08         9.27         8.52         5.95         6.81         5.98 
TCGA-06-2567 TCGA-06-5408 TCGA-06-5415 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 
        4.37        11.21         8.55         3.75         6.12         4.54 
TCGA-06-6390 TCGA-08-0244 TCGA-08-0357 TCGA-08-0358 TCGA-08-0375 TCGA-08-0386 
        5.36        22.68        35.64        19.50         9.17        15.72 
TCGA-08-0511 TCGA-08-0516 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0529 
        7.73        18.44         1.28        10.72         4.80        17.29 
TCGA-08-0531 TCGA-12-0656 TCGA-12-0657 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 
        5.52        65.88         0.10        24.13         2.63        18.08 
TCGA-12-0707 TCGA-12-0780 TCGA-12-0819 TCGA-12-0821 TCGA-12-0826 TCGA-12-0828 
       28.37        14.27        24.76        10.62        27.78         8.91 
TCGA-12-1089 TCGA-12-1091 TCGA-12-1098 TCGA-12-1600 TCGA-12-3648 TCGA-12-3649 
        5.82        30.54         3.98        13.61        25.78        11.54 
TCGA-12-3652 TCGA-12-3653 TCGA-14-0786 TCGA-14-0787 TCGA-14-0790 TCGA-14-1453 
       34.52        11.74        23.05         2.24        13.74         1.15 
TCGA-14-2555 TCGA-15-0742 TCGA-15-1446 TCGA-16-1047 TCGA-16-1056 TCGA-16-1062 
        7.96         9.86        19.10         0.82        13.35        18.28 
TCGA-19-0955 TCGA-19-0962 TCGA-19-0964 TCGA-19-1386 TCGA-19-1786 TCGA-19-1787 
       11.77         0.43         3.39         9.07         7.13        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 
        3.25         0.13         9.67         4.87         1.08         7.53 
TCGA-19-2625 TCGA-19-2631 TCGA-19-4068 TCGA-19-5950 TCGA-19-5951 TCGA-19-5954 
        4.08         7.00         4.47        11.28         8.02         7.96 
TCGA-19-5958 TCGA-19-5959 TCGA-26-1440 TCGA-26-1443 TCGA-26-5132 TCGA-27-1833 
        5.39         5.29         9.73         7.10         9.40        18.25 
TCGA-27-1835 TCGA-27-1838 TCGA-27-2518 TCGA-27-2526 TCGA-27-2528 TCGA-28-1749 
       21.30        11.51        24.72         2.86        15.75         9.17 
TCGA-28-1755 TCGA-28-1757 TCGA-28-2506 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
        1.51         0.13         6.74        10.49         5.42        15.35 
TCGA-32-1978 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-41-2572 
       15.85        14.99        15.95         7.33         8.84        13.35 
TCGA-41-3392 TCGA-41-4097 TCGA-76-4931 TCGA-81-5910 TCGA-87-5896 
        0.99         0.20         9.14         1.61         0.07 

$subtype2
TCGA-02-0014 TCGA-02-0026 TCGA-02-0048 TCGA-02-0069 TCGA-02-0074 TCGA-02-0080 
       82.55        24.59         3.19        28.70        10.19        89.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0104 TCGA-02-0114 TCGA-02-0258 
        0.23        51.29        57.76        65.00        99.95        16.54 
TCGA-02-0281 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0332 
        3.98         9.86         7.69        10.62         0.16        25.71 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0432 TCGA-02-0439 TCGA-02-0440 TCGA-02-0446 
       10.59        12.39        47.11         0.66        11.34         9.24 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-06-0128 TCGA-06-0129 TCGA-06-0132 
       16.80        12.92        15.29        22.72        32.48        18.74 
TCGA-06-0133 TCGA-06-0138 TCGA-06-0142 TCGA-06-0146 TCGA-06-0156 TCGA-06-0160 
       14.07        22.16         2.20        20.09         5.39        11.80 
TCGA-06-0162 TCGA-06-0166 TCGA-06-0167 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        2.56         5.29        11.41        13.02         0.23         2.20 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0185 TCGA-06-0188 TCGA-06-0195 
        1.97        53.98        19.00        37.02        28.47         7.04 
TCGA-06-0208 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 
        5.46        12.43         0.33        18.02        10.32        11.80 
TCGA-06-0241 TCGA-06-0410 TCGA-06-0413 TCGA-06-0414 TCGA-06-0646 TCGA-06-0648 
       14.96         4.67         0.16        35.01         4.47         9.63 
TCGA-06-0686 TCGA-06-0745 TCGA-06-0749 TCGA-06-0875 TCGA-06-1801 TCGA-06-1802 
        9.37         5.36         2.14         9.17         8.65         7.86 
TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2570 TCGA-06-5411 TCGA-06-5416 
        4.18         0.76         4.90         9.37         8.35         6.71 
TCGA-06-5417 TCGA-06-6389 TCGA-06-6391 TCGA-08-0245 TCGA-08-0344 TCGA-08-0347 
        5.10         7.76         1.45        34.75       108.82        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0353 TCGA-08-0359 
       10.39         7.59         3.39        53.79         6.41         0.95 
TCGA-08-0385 TCGA-08-0389 TCGA-08-0517 TCGA-08-0524 TCGA-12-0616 TCGA-12-0618 
        1.02         3.19        58.19         6.51        14.40         1.61 
TCGA-12-0670 TCGA-12-0818 TCGA-12-0820 TCGA-12-0827 TCGA-12-1088 TCGA-12-1095 
       25.97        91.73        18.48        38.76       127.56        15.85 
TCGA-12-1097 TCGA-12-1099 TCGA-12-1597 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
       14.53         3.39        14.04         6.38        59.41        43.20 
TCGA-12-3650 TCGA-12-3651 TCGA-14-0813 TCGA-14-0865 TCGA-14-1401 TCGA-14-1451 
       10.95        11.77         1.35        16.50         3.75        23.11 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1795 TCGA-14-1821 
       30.15         0.92        40.93         6.12         1.94        17.75 
TCGA-14-1825 TCGA-14-1827 TCGA-14-3476 TCGA-14-3477 TCGA-14-4157 TCGA-15-1447 
        7.63         5.88         0.39         3.75         3.39        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 
        5.49         3.91         9.93        26.07        16.31         4.27 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0957 TCGA-19-0960 TCGA-19-0963 TCGA-19-1387 
       13.97         6.41        21.86         8.61        14.27         5.95 
TCGA-19-1388 TCGA-19-1390 TCGA-19-1392 TCGA-19-1788 TCGA-19-2624 TCGA-19-2629 
       12.95        25.38         3.48         3.65         0.16        16.47 
TCGA-19-5956 TCGA-19-5960 TCGA-26-1442 TCGA-26-1799 TCGA-26-5133 TCGA-26-5134 
        6.51         5.42        31.33         9.37        14.86         5.49 
TCGA-26-5135 TCGA-27-1836 TCGA-27-1837 TCGA-27-2521 TCGA-27-2523 TCGA-28-1746 
        8.84        30.05        14.04        10.39        16.08         0.20 
TCGA-28-1747 TCGA-28-1756 TCGA-28-2514 TCGA-28-5204 TCGA-32-1976 TCGA-32-1980 
        2.53         2.83         5.26         3.91         0.49         1.18 
TCGA-32-2634 TCGA-32-4208 TCGA-32-4210 TCGA-32-5222 TCGA-41-2571 TCGA-41-2573 
        8.88        13.15         3.68         5.42         0.85         8.94 
TCGA-41-2575 TCGA-41-3393 TCGA-41-5651 TCGA-76-4925 TCGA-76-4932 TCGA-76-4934 
        9.53         4.44        11.54         4.77        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6285 
       10.78        16.67         3.29         8.32 

$subtype3
TCGA-02-0001 TCGA-02-0003 TCGA-02-0004 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        11.34        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0015 TCGA-02-0021 TCGA-02-0024 TCGA-02-0025 TCGA-02-0027 
       20.71        20.61        77.62        53.06        42.74        10.36 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 
       90.58         2.83        14.14        10.72        10.52        18.28 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 
        6.84        14.70        15.06        12.59         6.54        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 
        8.35         9.57         6.02        19.73        26.43        25.05 
TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0083 TCGA-02-0086 TCGA-02-0089 
        5.49        20.84        27.22        22.72         8.81        16.93 
TCGA-02-0099 TCGA-02-0102 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0116 
        3.48        26.99        11.67        17.65        23.15        48.95 
TCGA-02-0266 TCGA-02-0271 TCGA-02-0330 TCGA-02-0337 TCGA-02-0451 TCGA-02-0456 
       17.69        14.47        15.91        25.12        16.18         3.35 
TCGA-02-2486 TCGA-06-0122 TCGA-06-0124 TCGA-06-0130 TCGA-06-0137 TCGA-06-0139 
       16.18         0.26         4.04        10.52        23.05        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0143 TCGA-06-0145 TCGA-06-0147 TCGA-06-0149 
        0.20         9.21        11.74         2.33        16.70         7.82 
TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0164 TCGA-06-0168 TCGA-06-0169 
       11.80        12.79         8.65        56.84        19.04         3.12 
TCGA-06-0175 TCGA-06-0176 TCGA-06-0182 TCGA-06-0184 TCGA-06-0189 TCGA-06-0190 
        2.73        51.32         2.53        40.37        14.93        10.29 
TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0210 
       18.28         4.67         2.60         0.39         6.44         4.96 
TCGA-06-0213 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0412 
        0.20        10.29         5.52         0.26        70.52         8.05 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0649 TCGA-06-0650 TCGA-06-0750 TCGA-06-0878 
       12.33         3.22         2.04        23.57         0.92         7.17 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 
        5.85         5.42        20.94         7.43         6.35         3.58 
TCGA-06-1800 TCGA-06-2562 TCGA-06-2569 TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 
       26.79         2.83         0.43         3.52         4.54         8.81 
TCGA-06-5414 TCGA-06-5418 TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 TCGA-08-0352 
        8.98         2.73         3.91         1.74         4.34         1.28 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0360 TCGA-08-0373 TCGA-08-0380 
       15.06        22.52        14.70        11.57         4.41        10.85 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 
       10.59         0.30         0.56         3.48        11.77         8.52 
TCGA-08-0522 TCGA-08-0525 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0772 
       18.25        15.98        10.39         5.95         7.17        53.10 
TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0822 TCGA-12-0829 
       43.10         5.49         9.11        14.83        23.51        20.58 
TCGA-12-1090 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1096 TCGA-12-1598 
        6.21        21.63        11.97        11.38         9.11         9.44 
TCGA-12-1599 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 
       25.28        13.08         3.22         2.01        15.09         0.95 
TCGA-14-0783 TCGA-14-0789 TCGA-14-0812 TCGA-14-0817 TCGA-14-0866 TCGA-14-0867 
        6.18        11.24         3.25         5.39        26.33         2.04 
TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1396 TCGA-14-1402 TCGA-14-1452 
       28.90        15.95        19.30         1.12        32.02         7.10 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1823 TCGA-14-1829 TCGA-14-2554 TCGA-16-1045 
       12.43         0.99        17.82         7.13        17.49        29.00 
TCGA-16-1055 TCGA-16-1060 TCGA-19-1385 TCGA-19-1389 TCGA-19-1790 TCGA-19-5947 
        9.90         3.65        10.75         4.64         5.03         6.64 
TCGA-19-5952 TCGA-19-5955 TCGA-26-1438 TCGA-26-1439 TCGA-26-5136 TCGA-26-5139 
       18.64         1.78        10.03        13.87         1.22         1.58 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1834 TCGA-27-2519 TCGA-27-2524 
        4.80        16.57         9.86        33.14        10.39         7.59 
TCGA-27-2527 TCGA-28-1745 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 
       14.40        11.31         8.32         7.59         8.45         1.18 
TCGA-28-1760 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-5207 TCGA-28-5208 
        4.70         0.66         4.77         7.30         9.04        15.55 
TCGA-28-5209 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
        2.53         9.80        14.20         7.79        13.64         4.21 
TCGA-28-5219 TCGA-32-1973 TCGA-32-1977 TCGA-32-1979 TCGA-32-1982 TCGA-32-1986 
        8.52        21.07         0.10        19.50         4.67        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2638 TCGA-32-4209 
       14.83        16.93        12.23        20.78         7.36        11.11 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-41-3915 TCGA-76-4926 TCGA-76-4927 
       12.59        11.70        10.85         6.02         4.54        17.59 
TCGA-76-4928 TCGA-76-4929 TCGA-76-6193 TCGA-76-6282 
        3.09         3.65         2.70        17.06 

subtype1 subtype2 subtype3 
    0.07     0.16     0.10 
subtype1 subtype2 subtype3 
   92.61   127.56    90.58 
subtype1 subtype2 subtype3 
   9.670    9.450   10.325 
[1] "0.1 - 92.6 (9.7)"  "0.2 - 127.6 (9.4)" "0.1 - 90.6 (10.3)"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [43] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [55] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [61] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [67] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [97] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[103] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[127] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[145] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[151] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[169] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[175] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[181] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[187] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[193] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[199] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[205] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[211] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[217] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[223] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[235] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[241] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[247] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[253] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[259] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[265] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[271] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[283] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[289] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[295] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[301] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[307] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[313] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[319] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[325] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[331] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[337] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[343] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[349] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[355] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[361] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[367] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[373] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[379] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[385] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[391] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[397] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[403] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[409] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[415] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[421] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[427] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[433] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[439] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[445] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[451] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[457] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[463] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[469] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[475] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[481] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[487] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[493] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[499] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[505] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[511] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[517] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[523] "subtype1"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [43] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [55] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [61] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [67] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [97] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[103] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[127] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[145] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[151] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[169] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[175] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[181] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[187] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[193] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[199] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[205] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[211] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[217] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[223] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[235] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[241] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[247] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[253] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[259] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[265] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[271] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[283] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[289] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[295] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[301] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[307] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[313] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[319] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[325] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[331] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[337] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[343] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[349] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[355] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[361] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[367] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[373] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[379] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[385] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[391] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[397] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[403] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[409] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[415] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[421] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[427] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[433] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[439] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[445] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[451] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[457] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[463] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[469] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[475] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[481] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[487] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[493] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[499] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[505] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[511] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[517] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[523] "subtype1"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [43] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [55] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [61] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [67] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [97] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[103] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[127] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[145] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[151] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[169] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[175] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[181] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[187] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[193] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[199] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[205] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[211] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[217] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[223] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[235] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[241] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[247] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[253] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[259] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[265] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[271] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[283] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[289] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[295] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[301] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[307] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[313] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[319] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[325] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[331] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[337] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[343] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[349] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[355] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[361] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[367] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[373] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[379] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[385] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[391] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[397] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[403] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[409] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[415] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[421] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[427] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[433] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[439] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[445] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[451] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[457] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[463] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[469] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[475] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[481] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[487] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[493] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[499] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[505] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[511] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[517] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[523] "subtype1"
D2V2, continuous
D2V3, binary
          cls
clus         0   1
  subtype1  56  75
  subtype2  63 109
  subtype3  86 134
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   56   75
  subtype2   63  109
  subtype3   86  134
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       56       63       86
  MALE         75      109      134
D2V4, continuous
          vv
clus       GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  subtype1                             0                   3
  subtype2                             3                   4
  subtype3                             1                  13
          vv
clus       UNTREATED PRIMARY (DE NOVO) GBM
  subtype1                             128
  subtype2                             165
  subtype3                             206
D2V5, multiclass
D2V6, binary
          cls
clus         0   1
  subtype1  90  41
  subtype2 108  64
  subtype3 160  60
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   90   41
  subtype2  108   64
  subtype3  160   60
     clus
vv    subtype1 subtype2 subtype3
  NO        90      108      160
  YES       41       64       60

Clustering(3) Variable = MIR_CNMF
D3V1, survival
          sevent
clus2        0   1
  subtype1  28 118
  subtype2  35 124
  subtype3  17  59
  subtype4  23  84
subtype1 subtype2 subtype3 subtype4 
     146      159       76      107 
subtype1 subtype2 subtype3 subtype4 
     118      124       59       84 
$subtype1
TCGA-02-0001 TCGA-02-0004 TCGA-02-0006 TCGA-02-0009 TCGA-02-0015 TCGA-02-0023 
        9.14        11.34        18.35        10.59        20.61        20.12 
TCGA-02-0027 TCGA-02-0033 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0051 
       10.36         2.83         3.58        10.72        10.52        15.06 
TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0059 TCGA-02-0070 TCGA-02-0071 
        6.54         2.50        19.86         9.57        25.05         5.49 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0086 TCGA-02-0099 TCGA-02-0115 TCGA-02-0289 
       20.84        27.22         8.81         3.48        15.65        14.20 
TCGA-02-0290 TCGA-02-0324 TCGA-02-0326 TCGA-02-0422 TCGA-02-0451 TCGA-02-2486 
       15.95         7.69         0.16        14.50        16.18        16.18 
TCGA-06-0122 TCGA-06-0147 TCGA-06-0151 TCGA-06-0159 TCGA-06-0174 TCGA-06-0176 
        0.26        16.70        46.59         9.44         2.20        51.32 
TCGA-06-0184 TCGA-06-0187 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 
       40.37        26.33        10.29        18.28         4.67         2.60 
TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0394 TCGA-06-0397 TCGA-06-0412 
       11.84         0.20        12.43        10.29         5.52         8.05 
TCGA-06-0644 TCGA-06-0649 TCGA-06-0745 TCGA-06-0749 TCGA-06-0878 TCGA-06-1800 
       12.33         2.04         5.36         2.14         7.17        26.79 
TCGA-06-2561 TCGA-06-2562 TCGA-06-5414 TCGA-06-5418 TCGA-08-0244 TCGA-08-0246 
        9.27         2.83         8.98         2.73        22.68         3.91 
TCGA-08-0346 TCGA-08-0352 TCGA-08-0354 TCGA-08-0360 TCGA-08-0380 TCGA-08-0390 
        4.34         1.28        15.06        11.57        10.85        10.59 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0511 TCGA-08-0512 TCGA-08-0514 TCGA-08-0518 
        0.56         3.48         7.73        11.77         8.52         1.28 
TCGA-08-0521 TCGA-08-0522 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0657 
        4.80        18.25        15.98        17.29         5.52         0.10 
TCGA-12-0662 TCGA-12-0776 TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 
       38.17         9.11        23.51        27.78         8.91        20.58 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1097 TCGA-12-1599 TCGA-12-3648 TCGA-12-3649 
       11.38        15.85        14.53        25.28        25.78        11.54 
TCGA-12-3652 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0789 
       34.52        13.08         3.22         2.01        15.09        11.24 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1452 TCGA-14-1459 TCGA-14-1823 TCGA-14-1829 
       15.95        19.30         7.10        12.43        17.82         7.13 
TCGA-15-0742 TCGA-15-1446 TCGA-16-1045 TCGA-16-1055 TCGA-16-1060 TCGA-19-0955 
        9.86        19.10        29.00         9.90         3.65        11.77 
TCGA-19-0962 TCGA-19-1385 TCGA-19-1386 TCGA-19-1388 TCGA-19-1389 TCGA-19-1790 
        0.43        10.75         9.07        12.95         4.64         5.03 
TCGA-19-2619 TCGA-19-2621 TCGA-19-2623 TCGA-26-1438 TCGA-26-1439 TCGA-26-5139 
        9.67         1.08         7.53        10.03        13.87         1.58 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1834 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       16.57         9.86        33.14         2.86        14.40        15.75 
TCGA-28-1745 TCGA-28-1751 TCGA-28-1753 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 
       11.31         7.59         1.18         0.66         4.77         7.30 
TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-32-1987 TCGA-32-1991 TCGA-32-2615 
        3.91        15.55         2.53        14.83        16.93        15.95 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2638 TCGA-32-4213 TCGA-32-4719 TCGA-41-3915 
        7.33         8.84         7.36        11.70        10.85         6.02 
TCGA-76-4927 TCGA-76-4932 
       17.59        47.93 

$subtype2
TCGA-02-0003 TCGA-02-0007 TCGA-02-0010 TCGA-02-0014 TCGA-02-0016 TCGA-02-0026 
        4.73        23.18        35.41        82.55        55.86        24.59 
TCGA-02-0043 TCGA-02-0048 TCGA-02-0069 TCGA-02-0074 TCGA-02-0080 TCGA-02-0083 
       18.28         3.19        28.70        10.19        89.72        22.72 
TCGA-02-0084 TCGA-02-0087 TCGA-02-0102 TCGA-02-0104 TCGA-02-0114 TCGA-02-0116 
        0.23        57.76        26.99        65.00        99.95        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0430 
       16.54        16.90        10.75        14.47         3.98        10.55 
TCGA-02-0440 TCGA-02-2466 TCGA-02-2483 TCGA-02-2485 TCGA-06-0125 TCGA-06-0128 
       11.34        16.80        15.29        15.42        47.31        22.72 
TCGA-06-0129 TCGA-06-0137 TCGA-06-0138 TCGA-06-0145 TCGA-06-0146 TCGA-06-0157 
       32.48        23.05        22.16         2.33        20.09         3.19 
TCGA-06-0158 TCGA-06-0173 TCGA-06-0178 TCGA-06-0182 TCGA-06-0185 TCGA-06-0208 
        5.46         0.23        53.98         2.53        37.02         5.46 
TCGA-06-0216 TCGA-06-0237 TCGA-06-0402 TCGA-06-0410 TCGA-06-0646 TCGA-06-0648 
       22.49        10.32         0.26         4.67         4.47         9.63 
TCGA-06-0875 TCGA-06-0879 TCGA-06-2557 TCGA-06-2559 TCGA-06-2563 TCGA-06-2565 
        9.17        22.98         1.08         4.90         8.52         6.81 
TCGA-06-2567 TCGA-06-2570 TCGA-06-5417 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 
        4.37         9.37         5.10        34.75       108.82         1.74 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0355 TCGA-08-0357 TCGA-08-0375 TCGA-08-0385 
        7.59         3.39        22.52        35.64         9.17         1.02 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0516 TCGA-08-0517 TCGA-08-0520 TCGA-12-0618 
       15.72         3.19        18.44        58.19        10.72         1.61 
TCGA-12-0619 TCGA-12-0670 TCGA-12-0691 TCGA-12-0692 TCGA-12-0707 TCGA-12-0769 
       10.39        25.97         6.08         2.63        28.37        12.43 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0820 TCGA-12-0821 TCGA-12-0827 
       53.10        43.10         5.49        18.48        10.62        38.76 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1098 TCGA-12-1598 
      127.56         5.82         6.21        30.54         3.98         9.44 
TCGA-12-1600 TCGA-12-3646 TCGA-12-3650 TCGA-12-3653 TCGA-14-0783 TCGA-14-0786 
       13.61        43.20        10.95        11.74         6.18        23.05 
TCGA-14-0787 TCGA-14-0790 TCGA-14-0817 TCGA-14-0865 TCGA-14-1453 TCGA-14-1454 
        2.24        13.74         5.39        16.50         1.15        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1821 TCGA-14-1825 TCGA-14-2554 TCGA-14-3477 
        0.92        40.93        17.75         7.63        17.49         3.75 
TCGA-14-4157 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-1047 TCGA-16-1056 
        3.39         9.93        26.07        16.31         0.82        13.35 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0964 TCGA-19-1390 
       18.28        13.97         6.41         8.61         3.39        25.38 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2624 TCGA-19-2629 
        7.13        12.66         3.25         0.13         0.16        16.47 
TCGA-19-2631 TCGA-26-1440 TCGA-26-5133 TCGA-26-5135 TCGA-26-5136 TCGA-27-1833 
        7.00         9.73        14.86         8.84         1.22        18.25 
TCGA-27-1835 TCGA-27-1837 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-28-1746 
       21.30        14.04        10.39        10.39        16.08         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-2514 TCGA-28-5207 TCGA-28-5215 TCGA-28-5220 
        2.53         9.17         5.26         9.04         7.79        10.49 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-2634 TCGA-32-4208 TCGA-32-4209 
       15.35        21.07         0.49         8.88        13.15        11.11 
TCGA-32-4210 TCGA-32-4211 TCGA-32-5222 TCGA-41-2575 TCGA-41-3393 TCGA-41-4097 
        3.68        12.59         5.42         9.53         4.44         0.20 
TCGA-76-4925 TCGA-76-4929 TCGA-76-4931 
        4.77         3.65         9.14 

$subtype3
TCGA-02-0011 TCGA-02-0024 TCGA-02-0052 TCGA-02-0058 TCGA-02-0060 TCGA-02-0085 
       20.71        53.06        12.59         8.35         6.02        51.29 
TCGA-02-0089 TCGA-02-0321 TCGA-02-0325 TCGA-02-0330 TCGA-02-0338 TCGA-02-0339 
       16.93         9.86        10.62        15.91        10.59        12.39 
TCGA-02-0439 TCGA-02-0446 TCGA-02-2470 TCGA-06-0126 TCGA-06-0142 TCGA-06-0160 
        0.66         9.24        12.92         0.10         2.20        11.80 
TCGA-06-0162 TCGA-06-0171 TCGA-06-0177 TCGA-06-0179 TCGA-06-0195 TCGA-06-0219 
        2.56        13.02         1.97        19.00         7.04         0.33 
TCGA-06-0221 TCGA-06-0241 TCGA-06-0413 TCGA-06-0414 TCGA-06-0686 TCGA-06-0747 
       18.02        14.96         0.16        35.01         9.37         2.70 
TCGA-06-0750 TCGA-06-0882 TCGA-06-0939 TCGA-06-1801 TCGA-06-2558 TCGA-06-2564 
        0.92         5.42        20.94         8.65         0.76         5.95 
TCGA-06-2566 TCGA-06-5415 TCGA-06-5416 TCGA-08-0347 TCGA-08-0348 TCGA-08-0351 
        5.98         8.55         6.71        13.78        10.39        53.79 
TCGA-08-0359 TCGA-08-0373 TCGA-12-0780 TCGA-12-1099 TCGA-12-1597 TCGA-14-0812 
        0.95         4.41        14.27         3.39        14.04         3.25 
TCGA-14-0866 TCGA-14-0867 TCGA-14-1451 TCGA-14-1458 TCGA-14-1827 TCGA-14-3476 
       26.33         2.04        23.11         6.12         5.88         0.39 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0861 TCGA-19-0963 TCGA-19-1387 TCGA-19-1392 
        5.49         3.91         4.27        14.27         5.95         3.48 
TCGA-19-1788 TCGA-19-2620 TCGA-26-1799 TCGA-26-5134 TCGA-27-1836 TCGA-27-2518 
        3.65         4.87         9.37         5.49        30.05        24.72 
TCGA-28-1752 TCGA-28-1756 TCGA-28-2506 TCGA-28-5219 TCGA-32-2495 TCGA-41-2573 
        8.45         2.83         6.74         8.52        14.99         8.94 
TCGA-41-3392 TCGA-76-4926 TCGA-76-4934 TCGA-76-4935 
        0.99         4.54         2.53        10.78 

$subtype4
TCGA-02-0021 TCGA-02-0025 TCGA-02-0028 TCGA-02-0034 TCGA-02-0047 TCGA-02-0064 
       77.62        42.74        90.58        14.14        14.70        19.73 
TCGA-02-0068 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0266 
       26.43        11.67        17.65        23.15        92.61        17.69 
TCGA-02-0285 TCGA-02-0317 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0432 
       13.87        12.23        25.71         4.37        25.12        47.11 
TCGA-02-0456 TCGA-06-0124 TCGA-06-0127 TCGA-06-0130 TCGA-06-0133 TCGA-06-0139 
        3.35         4.04         3.55        10.52        14.07        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0143 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 
        0.20         9.21        11.74         7.82        19.46        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0156 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 
       12.79         8.65         5.39        56.84         5.29        19.04 
TCGA-06-0169 TCGA-06-0175 TCGA-06-0188 TCGA-06-0189 TCGA-06-0210 TCGA-06-0238 
        3.12         2.73        28.47        14.93         4.96        11.80 
TCGA-06-0409 TCGA-06-0645 TCGA-06-0743 TCGA-06-0744 TCGA-06-0876 TCGA-06-0877 
       70.52         3.22        22.29        19.53         8.91         6.71 
TCGA-06-0881 TCGA-06-1084 TCGA-06-1086 TCGA-06-1087 TCGA-06-1802 TCGA-06-1805 
        5.85         7.43         6.35         3.58         7.86         4.18 
TCGA-06-2569 TCGA-08-0353 TCGA-08-0356 TCGA-08-0358 TCGA-08-0392 TCGA-08-0524 
        0.43         6.41        14.70        19.50         0.30         6.51 
TCGA-12-0616 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0688 TCGA-12-0703 
       14.40         5.95         7.17        65.88        24.13        18.08 
TCGA-12-0778 TCGA-12-1092 TCGA-12-1093 TCGA-12-1096 TCGA-12-1602 TCGA-12-3644 
       14.83        21.63        11.97         9.11         6.38        59.41 
TCGA-12-3651 TCGA-14-0813 TCGA-14-0871 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       11.77         1.35        28.90         1.12         3.75        32.02 
TCGA-14-1794 TCGA-14-1795 TCGA-14-2555 TCGA-15-1447 TCGA-19-0957 TCGA-19-2625 
        0.99         1.94         7.96        53.19        21.86         4.08 
TCGA-19-4068 TCGA-26-1443 TCGA-26-5132 TCGA-27-1830 TCGA-27-1838 TCGA-27-2524 
        4.47         7.10         9.40         4.80        11.51         7.59 
TCGA-28-1750 TCGA-28-1755 TCGA-28-1757 TCGA-28-1760 TCGA-28-5213 TCGA-28-5214 
        8.32         1.51         0.13         4.70         9.80        14.20 
TCGA-28-5216 TCGA-28-5218 TCGA-32-1977 TCGA-32-1978 TCGA-32-1982 TCGA-32-1986 
       13.64         4.21         0.10        15.85         4.67        12.69 
TCGA-32-2491 TCGA-32-2494 TCGA-41-2571 TCGA-41-2572 TCGA-76-4928 
       12.23        20.78         0.85        13.35         3.09 

subtype1 subtype2 subtype3 subtype4 
    0.10     0.13     0.10     0.10 
subtype1 subtype2 subtype3 subtype4 
   51.32   127.56    53.79    92.61 
subtype1 subtype2 subtype3 subtype4 
  10.555   10.550    8.400   10.750 
[1] "0.1 - 51.3 (10.6)"  "0.1 - 127.6 (10.6)" "0.1 - 53.8 (8.4)"  
[4] "0.1 - 92.6 (10.8)" 
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype4"
 [13] "subtype1" "subtype3" "subtype4" "subtype2" "subtype1" "subtype4"
 [19] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype4" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype4"
 [37] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype2" "subtype4" "subtype4"
 [55] "subtype4" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype4"
 [67] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype4" "subtype3"
 [79] "subtype3" "subtype1" "subtype2" "subtype4" "subtype3" "subtype2"
 [85] "subtype3" "subtype1" "subtype4" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype1" "subtype4" "subtype2" "subtype3"
 [97] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype2"
[103] "subtype2" "subtype4" "subtype4" "subtype4" "subtype3" "subtype4"
[109] "subtype2" "subtype2" "subtype1" "subtype4" "subtype4" "subtype1"
[115] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
[121] "subtype1" "subtype3" "subtype3" "subtype4" "subtype4" "subtype4"
[127] "subtype4" "subtype3" "subtype2" "subtype1" "subtype4" "subtype1"
[133] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[139] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype4" "subtype1" "subtype1"
[151] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
[157] "subtype3" "subtype1" "subtype1" "subtype2" "subtype4" "subtype2"
[163] "subtype1" "subtype3" "subtype3" "subtype1" "subtype4" "subtype2"
[169] "subtype2" "subtype1" "subtype3" "subtype4" "subtype4" "subtype1"
[175] "subtype3" "subtype1" "subtype3" "subtype2" "subtype4" "subtype4"
[181] "subtype1" "subtype2" "subtype4" "subtype3" "subtype3" "subtype4"
[187] "subtype4" "subtype4" "subtype1" "subtype3" "subtype4" "subtype4"
[193] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[199] "subtype3" "subtype2" "subtype3" "subtype2" "subtype4" "subtype2"
[205] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[211] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[217] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype4"
[223] "subtype1" "subtype2" "subtype4" "subtype2" "subtype4" "subtype3"
[229] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[235] "subtype2" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[241] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[247] "subtype1" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[253] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[259] "subtype1" "subtype1" "subtype2" "subtype4" "subtype2" "subtype2"
[265] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype1" "subtype4" "subtype3" "subtype2" "subtype2" "subtype1"
[277] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[283] "subtype2" "subtype2" "subtype4" "subtype4" "subtype1" "subtype1"
[289] "subtype4" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[295] "subtype1" "subtype2" "subtype4" "subtype4" "subtype2" "subtype1"
[301] "subtype1" "subtype2" "subtype4" "subtype1" "subtype2" "subtype1"
[307] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[313] "subtype1" "subtype2" "subtype3" "subtype4" "subtype2" "subtype2"
[319] "subtype3" "subtype3" "subtype4" "subtype1" "subtype1" "subtype4"
[325] "subtype4" "subtype4" "subtype3" "subtype1" "subtype2" "subtype2"
[331] "subtype2" "subtype2" "subtype3" "subtype1" "subtype4" "subtype4"
[337] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[343] "subtype4" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[349] "subtype4" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[355] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[361] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype2"
[367] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[373] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[379] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[385] "subtype1" "subtype1" "subtype2" "subtype4" "subtype2" "subtype2"
[391] "subtype4" "subtype1" "subtype1" "subtype2" "subtype4" "subtype3"
[397] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[403] "subtype4" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[409] "subtype3" "subtype2" "subtype4" "subtype3" "subtype2" "subtype2"
[415] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[421] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype3"
[427] "subtype1" "subtype4" "subtype3" "subtype4" "subtype4" "subtype1"
[433] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[439] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype4"
[445] "subtype4" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[451] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype1"
[457] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[463] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[469] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype3"
[475] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[481] "subtype3" "subtype1" "subtype4" "subtype2" "subtype2" "subtype1"
[487] "subtype3" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype4"
 [13] "subtype1" "subtype3" "subtype4" "subtype2" "subtype1" "subtype4"
 [19] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype4" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype4"
 [37] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype2" "subtype4" "subtype4"
 [55] "subtype4" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype4"
 [67] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype4" "subtype3"
 [79] "subtype3" "subtype1" "subtype2" "subtype4" "subtype3" "subtype2"
 [85] "subtype3" "subtype1" "subtype4" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype1" "subtype4" "subtype2" "subtype3"
 [97] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype2"
[103] "subtype2" "subtype4" "subtype4" "subtype4" "subtype3" "subtype4"
[109] "subtype2" "subtype2" "subtype1" "subtype4" "subtype4" "subtype1"
[115] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
[121] "subtype1" "subtype3" "subtype3" "subtype4" "subtype4" "subtype4"
[127] "subtype4" "subtype3" "subtype2" "subtype1" "subtype4" "subtype1"
[133] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[139] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype4" "subtype1" "subtype1"
[151] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
[157] "subtype3" "subtype1" "subtype1" "subtype2" "subtype4" "subtype2"
[163] "subtype1" "subtype3" "subtype3" "subtype1" "subtype4" "subtype2"
[169] "subtype2" "subtype1" "subtype3" "subtype4" "subtype4" "subtype1"
[175] "subtype3" "subtype1" "subtype3" "subtype2" "subtype4" "subtype4"
[181] "subtype1" "subtype2" "subtype4" "subtype3" "subtype3" "subtype4"
[187] "subtype4" "subtype4" "subtype1" "subtype3" "subtype4" "subtype4"
[193] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[199] "subtype3" "subtype2" "subtype3" "subtype2" "subtype4" "subtype2"
[205] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[211] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[217] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype4"
[223] "subtype1" "subtype2" "subtype4" "subtype2" "subtype4" "subtype3"
[229] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[235] "subtype2" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[241] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[247] "subtype1" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[253] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[259] "subtype1" "subtype1" "subtype2" "subtype4" "subtype2" "subtype2"
[265] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype1" "subtype4" "subtype3" "subtype2" "subtype2" "subtype1"
[277] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[283] "subtype2" "subtype2" "subtype4" "subtype4" "subtype1" "subtype1"
[289] "subtype4" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[295] "subtype1" "subtype2" "subtype4" "subtype4" "subtype2" "subtype1"
[301] "subtype1" "subtype2" "subtype4" "subtype1" "subtype2" "subtype1"
[307] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[313] "subtype1" "subtype2" "subtype3" "subtype4" "subtype2" "subtype2"
[319] "subtype3" "subtype3" "subtype4" "subtype1" "subtype1" "subtype4"
[325] "subtype4" "subtype4" "subtype3" "subtype1" "subtype2" "subtype2"
[331] "subtype2" "subtype2" "subtype3" "subtype1" "subtype4" "subtype4"
[337] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[343] "subtype4" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[349] "subtype4" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[355] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[361] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype2"
[367] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[373] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[379] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[385] "subtype1" "subtype1" "subtype2" "subtype4" "subtype2" "subtype2"
[391] "subtype4" "subtype1" "subtype1" "subtype2" "subtype4" "subtype3"
[397] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[403] "subtype4" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[409] "subtype3" "subtype2" "subtype4" "subtype3" "subtype2" "subtype2"
[415] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[421] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype3"
[427] "subtype1" "subtype4" "subtype3" "subtype4" "subtype4" "subtype1"
[433] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[439] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype4"
[445] "subtype4" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[451] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype1"
[457] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[463] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[469] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype3"
[475] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[481] "subtype3" "subtype1" "subtype4" "subtype2" "subtype2" "subtype1"
[487] "subtype3" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype4"
 [13] "subtype1" "subtype3" "subtype4" "subtype2" "subtype1" "subtype4"
 [19] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype4" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype4"
 [37] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype2" "subtype4" "subtype4"
 [55] "subtype4" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype4"
 [67] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype4" "subtype3"
 [79] "subtype3" "subtype1" "subtype2" "subtype4" "subtype3" "subtype2"
 [85] "subtype3" "subtype1" "subtype4" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype1" "subtype4" "subtype2" "subtype3"
 [97] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype2"
[103] "subtype2" "subtype4" "subtype4" "subtype4" "subtype3" "subtype4"
[109] "subtype2" "subtype2" "subtype1" "subtype4" "subtype4" "subtype1"
[115] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
[121] "subtype1" "subtype3" "subtype3" "subtype4" "subtype4" "subtype4"
[127] "subtype4" "subtype3" "subtype2" "subtype1" "subtype4" "subtype1"
[133] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[139] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype4" "subtype1" "subtype1"
[151] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
[157] "subtype3" "subtype1" "subtype1" "subtype2" "subtype4" "subtype2"
[163] "subtype1" "subtype3" "subtype3" "subtype1" "subtype4" "subtype2"
[169] "subtype2" "subtype1" "subtype3" "subtype4" "subtype4" "subtype1"
[175] "subtype3" "subtype1" "subtype3" "subtype2" "subtype4" "subtype4"
[181] "subtype1" "subtype2" "subtype4" "subtype3" "subtype3" "subtype4"
[187] "subtype4" "subtype4" "subtype1" "subtype3" "subtype4" "subtype4"
[193] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[199] "subtype3" "subtype2" "subtype3" "subtype2" "subtype4" "subtype2"
[205] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[211] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[217] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype4"
[223] "subtype1" "subtype2" "subtype4" "subtype2" "subtype4" "subtype3"
[229] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[235] "subtype2" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[241] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[247] "subtype1" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[253] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[259] "subtype1" "subtype1" "subtype2" "subtype4" "subtype2" "subtype2"
[265] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype1" "subtype4" "subtype3" "subtype2" "subtype2" "subtype1"
[277] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[283] "subtype2" "subtype2" "subtype4" "subtype4" "subtype1" "subtype1"
[289] "subtype4" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[295] "subtype1" "subtype2" "subtype4" "subtype4" "subtype2" "subtype1"
[301] "subtype1" "subtype2" "subtype4" "subtype1" "subtype2" "subtype1"
[307] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[313] "subtype1" "subtype2" "subtype3" "subtype4" "subtype2" "subtype2"
[319] "subtype3" "subtype3" "subtype4" "subtype1" "subtype1" "subtype4"
[325] "subtype4" "subtype4" "subtype3" "subtype1" "subtype2" "subtype2"
[331] "subtype2" "subtype2" "subtype3" "subtype1" "subtype4" "subtype4"
[337] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[343] "subtype4" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[349] "subtype4" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[355] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[361] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype2"
[367] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[373] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[379] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[385] "subtype1" "subtype1" "subtype2" "subtype4" "subtype2" "subtype2"
[391] "subtype4" "subtype1" "subtype1" "subtype2" "subtype4" "subtype3"
[397] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[403] "subtype4" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[409] "subtype3" "subtype2" "subtype4" "subtype3" "subtype2" "subtype2"
[415] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[421] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype3"
[427] "subtype1" "subtype4" "subtype3" "subtype4" "subtype4" "subtype1"
[433] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[439] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype4"
[445] "subtype4" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[451] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype1"
[457] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[463] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[469] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype3"
[475] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[481] "subtype3" "subtype1" "subtype4" "subtype2" "subtype2" "subtype1"
[487] "subtype3" "subtype3"
D3V2, continuous
D3V3, binary
          cls
clus        0  1
  subtype1 57 89
  subtype2 68 91
  subtype3 27 49
  subtype4 36 71
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   57   89
  subtype2   68   91
  subtype3   27   49
  subtype4   36   71
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       57       68       27       36
  MALE         89       91       49       71
D3V4, continuous
          vv
clus       GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  subtype1                             2                   3
  subtype2                             0                   9
  subtype3                             2                   5
  subtype4                             2                   3
          vv
clus       UNTREATED PRIMARY (DE NOVO) GBM
  subtype1                             141
  subtype2                             150
  subtype3                              69
  subtype4                             102
D3V5, multiclass
D3V6, binary
          cls
clus         0   1
  subtype1 105  41
  subtype2 112  47
  subtype3  46  30
  subtype4  73  34
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  105   41
  subtype2  112   47
  subtype3   46   30
  subtype4   73   34
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO       105      112       46       73
  YES       41       47       30       34

Clustering(4) Variable = MIR_CHIERARCHICAL
D4V1, survival
          sevent
clus2        0   1
  subtype1  33 140
  subtype2  35 146
  subtype3  35  99
subtype1 subtype2 subtype3 
     173      181      134 
subtype1 subtype2 subtype3 
     140      146       99 
$subtype1
TCGA-02-0004 TCGA-02-0006 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 
       11.34        18.35        77.62        20.12        53.06        42.74 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0039 TCGA-02-0047 TCGA-02-0051 
        2.83        14.14         3.58        10.52        14.70        15.06 
TCGA-02-0055 TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0085 
        2.50         9.57        19.73        26.43        25.05        51.29 
TCGA-02-0086 TCGA-02-0089 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
        8.81        16.93        11.67        17.65        23.15        92.61 
TCGA-02-0266 TCGA-02-0285 TCGA-02-0290 TCGA-02-0317 TCGA-02-0332 TCGA-02-0333 
       17.69        13.87        15.95        12.23        25.71         4.37 
TCGA-02-0337 TCGA-02-0446 TCGA-02-0456 TCGA-02-2486 TCGA-06-0122 TCGA-06-0124 
       25.12         9.24         3.35        16.18         0.26         4.04 
TCGA-06-0127 TCGA-06-0130 TCGA-06-0133 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
        3.55        10.52        14.07        10.75         0.20         9.21 
TCGA-06-0143 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
       11.74         7.82        19.46        46.59        11.80        12.79 
TCGA-06-0155 TCGA-06-0156 TCGA-06-0164 TCGA-06-0168 TCGA-06-0169 TCGA-06-0175 
        8.65         5.39        56.84        19.04         3.12         2.73 
TCGA-06-0176 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0197 
       51.32        28.47        14.93        10.29         4.67         2.60 
TCGA-06-0210 TCGA-06-0219 TCGA-06-0238 TCGA-06-0394 TCGA-06-0397 TCGA-06-0409 
        4.96         0.33        11.80        10.29         5.52        70.52 
TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 TCGA-06-0645 TCGA-06-0743 TCGA-06-0744 
        8.05         0.16        12.33         3.22        22.29        19.53 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0881 
        5.36         2.70         8.91         6.71         7.17         5.85 
TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 TCGA-06-1802 TCGA-06-2563 TCGA-06-2566 
        7.43         6.35        26.79         7.86         8.52         5.98 
TCGA-06-2569 TCGA-06-5415 TCGA-06-5418 TCGA-08-0346 TCGA-08-0353 TCGA-08-0354 
        0.43         8.55         2.73         4.34         6.41        15.06 
TCGA-08-0356 TCGA-08-0358 TCGA-08-0359 TCGA-08-0373 TCGA-08-0392 TCGA-08-0509 
       14.70        19.50         0.95         4.41         0.30         0.56 
TCGA-08-0512 TCGA-08-0521 TCGA-08-0522 TCGA-12-0616 TCGA-12-0620 TCGA-12-0654 
       11.77         4.80        18.25        14.40         5.95         7.17 
TCGA-12-0656 TCGA-12-0703 TCGA-12-0776 TCGA-12-0778 TCGA-12-0822 TCGA-12-0828 
       65.88        18.08         9.11        14.83        23.51         8.91 
TCGA-12-0829 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1096 TCGA-12-1602 
       20.58        21.63        11.97        11.38         9.11         6.38 
TCGA-12-3644 TCGA-12-3651 TCGA-12-5295 TCGA-14-0789 TCGA-14-0813 TCGA-14-0866 
       59.41        11.77        13.08        11.24         1.35        26.33 
TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
       28.90        15.95        19.30         1.12         3.75        32.02 
TCGA-14-1794 TCGA-14-2555 TCGA-14-3476 TCGA-16-1060 TCGA-19-0964 TCGA-19-1385 
        0.99         7.96         0.39         3.65         3.39        10.75 
TCGA-19-1389 TCGA-19-1790 TCGA-19-2625 TCGA-19-4068 TCGA-26-1439 TCGA-26-1443 
        4.64         5.03         4.08         4.47        13.87         7.10 
TCGA-26-5132 TCGA-26-5134 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1836 
        9.40         5.49         4.80        16.57         9.86        30.05 
TCGA-27-1838 TCGA-27-2524 TCGA-27-2527 TCGA-27-2528 TCGA-28-1745 TCGA-28-1751 
       11.51         7.59        14.40        15.75        11.31         7.59 
TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-1760 TCGA-28-2513 TCGA-28-5213 
        1.18         1.51         0.13         4.70         7.30         9.80 
TCGA-28-5216 TCGA-28-5218 TCGA-32-1977 TCGA-32-1978 TCGA-32-1982 TCGA-32-1986 
       13.64         4.21         0.10        15.85         4.67        12.69 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2615 TCGA-32-2632 TCGA-32-2638 TCGA-41-2571 
       12.23        20.78        15.95         8.84         7.36         0.85 
TCGA-41-2572 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4934 
       13.35         4.54        17.59         3.09         2.53 

$subtype2
TCGA-02-0001 TCGA-02-0007 TCGA-02-0009 TCGA-02-0016 TCGA-02-0027 TCGA-02-0038 
        9.14        23.18        10.59        55.86        10.36        10.72 
TCGA-02-0043 TCGA-02-0054 TCGA-02-0058 TCGA-02-0060 TCGA-02-0075 TCGA-02-0079 
       18.28         6.54         8.35         6.02        20.84        27.22 
TCGA-02-0083 TCGA-02-0099 TCGA-02-0102 TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 
       22.72         3.48        26.99        15.65        48.95        16.90 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0289 TCGA-02-0324 TCGA-02-0326 TCGA-02-0330 
       10.75        14.47        14.20         7.69         0.16        15.91 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0451 TCGA-02-2485 TCGA-06-0125 TCGA-06-0137 
       14.50        10.55        16.18        15.42        47.31        23.05 
TCGA-06-0138 TCGA-06-0145 TCGA-06-0147 TCGA-06-0157 TCGA-06-0159 TCGA-06-0162 
       22.16         2.33        16.70         3.19         9.44         2.56 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
       13.02         0.23         2.20         2.53        40.37        37.02 
TCGA-06-0187 TCGA-06-0192 TCGA-06-0195 TCGA-06-0208 TCGA-06-0211 TCGA-06-0213 
       26.33        18.28         7.04         5.46        11.84         0.20 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0237 TCGA-06-0402 TCGA-06-0646 TCGA-06-0649 
       12.43        22.49        10.32         0.26         4.47         2.04 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0879 TCGA-06-2557 TCGA-06-2559 TCGA-06-2562 
        2.14         0.92        22.98         1.08         4.90         2.83 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-5414 TCGA-08-0244 TCGA-08-0246 
        5.95         6.81         4.37         8.98        22.68         3.91 
TCGA-08-0345 TCGA-08-0349 TCGA-08-0352 TCGA-08-0355 TCGA-08-0357 TCGA-08-0360 
        1.74         7.59         1.28        22.52        35.64        11.57 
TCGA-08-0380 TCGA-08-0390 TCGA-08-0510 TCGA-08-0511 TCGA-08-0514 TCGA-08-0516 
       10.85        10.59         3.48         7.73         8.52        18.44 
TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
       58.19         1.28        10.72        15.98        17.29         5.52 
TCGA-12-0619 TCGA-12-0657 TCGA-12-0662 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
       10.39         0.10        38.17        24.13         6.08         2.63 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0775 TCGA-12-0780 TCGA-12-0821 TCGA-12-0826 
       28.37        12.43         5.49        14.27        10.62        27.78 
TCGA-12-0827 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1097 
       38.76       127.56         5.82         6.21        30.54        14.53 
TCGA-12-1098 TCGA-12-1599 TCGA-12-1600 TCGA-12-3648 TCGA-12-3649 TCGA-12-3652 
        3.98        25.28        13.61        25.78        11.54        34.52 
TCGA-12-3653 TCGA-12-5299 TCGA-14-0736 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 
       11.74         3.22        15.09         6.18        23.05         2.24 
TCGA-14-0790 TCGA-14-0817 TCGA-14-1452 TCGA-14-1453 TCGA-14-1823 TCGA-14-1827 
       13.74         5.39         7.10         1.15        17.82         5.88 
TCGA-14-1829 TCGA-14-2554 TCGA-15-0742 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 
        7.13        17.49         9.86         9.93        29.00         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1062 TCGA-19-0955 TCGA-19-0962 TCGA-19-1386 
        9.90        13.35        18.28        11.77         0.43         9.07 
TCGA-19-1388 TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 
       12.95         7.13        12.66         3.25         0.13         9.67 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2629 TCGA-19-2631 TCGA-26-1438 TCGA-26-1440 
        1.08         7.53        16.47         7.00        10.03         9.73 
TCGA-26-5136 TCGA-26-5139 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-2519 
        1.22         1.58        18.25        33.14        21.30        10.39 
TCGA-27-2523 TCGA-27-2526 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-2502 
       16.08         2.86         2.53         9.17         8.32         0.66 
TCGA-28-2506 TCGA-28-2509 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        6.74         4.77         5.26         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5214 TCGA-28-5215 TCGA-28-5220 TCGA-32-1987 TCGA-32-2616 
        2.53        14.20         7.79        10.49        14.83         7.33 
TCGA-32-4209 TCGA-32-4211 TCGA-32-4213 TCGA-32-5222 TCGA-41-2575 TCGA-41-3392 
       11.11        12.59        11.70         5.42         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-76-4925 TCGA-76-4929 TCGA-76-4931 
        4.44         6.02         0.20         4.77         3.65         9.14 
TCGA-76-4932 
       47.93 

$subtype3
TCGA-02-0003 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0026 
        4.73        35.41        20.71        82.55        20.61        24.59 
TCGA-02-0028 TCGA-02-0048 TCGA-02-0052 TCGA-02-0057 TCGA-02-0069 TCGA-02-0071 
       90.58         3.19        12.59        19.86        28.70         5.49 
TCGA-02-0074 TCGA-02-0080 TCGA-02-0084 TCGA-02-0087 TCGA-02-0104 TCGA-02-0114 
       10.19        89.72         0.23        57.76        65.00        99.95 
TCGA-02-0258 TCGA-02-0281 TCGA-02-0321 TCGA-02-0325 TCGA-02-0338 TCGA-02-0339 
       16.54         3.98         9.86        10.62        10.59        12.39 
TCGA-02-0432 TCGA-02-0439 TCGA-02-0440 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
       47.11         0.66        11.34        16.80        12.92        15.29 
TCGA-06-0126 TCGA-06-0128 TCGA-06-0129 TCGA-06-0142 TCGA-06-0146 TCGA-06-0158 
        0.10        22.72        32.48         2.20        20.09         5.46 
TCGA-06-0160 TCGA-06-0166 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0221 
       11.80         5.29         1.97        53.98        19.00        18.02 
TCGA-06-0241 TCGA-06-0410 TCGA-06-0414 TCGA-06-0648 TCGA-06-0686 TCGA-06-0875 
       14.96         4.67        35.01         9.63         9.37         9.17 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1087 TCGA-06-1801 TCGA-06-1805 TCGA-06-2558 
        5.42        20.94         3.58         8.65         4.18         0.76 
TCGA-06-2561 TCGA-06-2570 TCGA-06-5416 TCGA-06-5417 TCGA-08-0245 TCGA-08-0344 
        9.27         9.37         6.71         5.10        34.75       108.82 
TCGA-08-0347 TCGA-08-0348 TCGA-08-0350 TCGA-08-0351 TCGA-08-0375 TCGA-08-0385 
       13.78        10.39         3.39        53.79         9.17         1.02 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0524 TCGA-12-0618 TCGA-12-0670 TCGA-12-0772 
       15.72         3.19         6.51         1.61        25.97        53.10 
TCGA-12-0773 TCGA-12-0820 TCGA-12-1095 TCGA-12-1099 TCGA-12-1597 TCGA-12-1598 
       43.10        18.48        15.85         3.39        14.04         9.44 
TCGA-12-3646 TCGA-12-3650 TCGA-12-5301 TCGA-14-0812 TCGA-14-0865 TCGA-14-0867 
       43.20        10.95         2.01         3.25        16.50         2.04 
TCGA-14-1451 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 
       23.11        30.15         0.92        40.93         6.12        12.43 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-3477 TCGA-14-4157 TCGA-15-1446 
        1.94        17.75         7.63         3.75         3.39        19.10 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 
       53.19         5.49         3.91        26.07        16.31         4.27 
TCGA-16-1063 TCGA-16-1460 TCGA-19-0957 TCGA-19-0960 TCGA-19-0963 TCGA-19-1387 
       13.97         6.41        21.86         8.61        14.27         5.95 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1788 TCGA-19-2620 TCGA-19-2624 TCGA-26-1799 
       25.38         3.48         3.65         4.87         0.16         9.37 
TCGA-26-5133 TCGA-26-5135 TCGA-27-1837 TCGA-27-2518 TCGA-27-2521 TCGA-28-1746 
       14.86         8.84        14.04        24.72        10.39         0.20 
TCGA-28-1752 TCGA-28-1756 TCGA-28-5219 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
        8.45         2.83         8.52        15.35        21.07         0.49 
TCGA-32-1991 TCGA-32-2495 TCGA-32-2634 TCGA-32-4208 TCGA-32-4210 TCGA-32-4719 
       16.93        14.99         8.88        13.15         3.68        10.85 
TCGA-41-2573 TCGA-76-4935 
        8.94        10.78 

subtype1 subtype2 subtype3 
     0.1      0.1      0.1 
subtype1 subtype2 subtype3 
   92.61   127.56   108.82 
subtype1 subtype2 subtype3 
    9.86     9.93    10.70 
[1] "0.1 - 92.6 (9.9)"   "0.1 - 127.6 (9.9)"  "0.1 - 108.8 (10.7)"
  [1] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [31] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [49] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [61] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [85] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[109] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[121] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[127] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[145] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[157] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[163] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[169] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[175] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[181] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[187] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[193] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[199] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[205] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[211] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[217] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[229] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[235] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[241] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[247] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[253] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[259] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[265] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[271] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[277] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[283] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[289] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[295] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[301] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[307] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[313] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[319] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[325] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[331] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[337] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[343] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[349] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[355] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[361] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[367] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[373] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[379] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[385] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[391] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[397] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[403] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[409] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[415] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[421] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[427] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[433] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[439] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[445] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[451] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[457] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[463] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[469] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[475] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[481] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[487] "subtype1" "subtype3"
  [1] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [31] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [49] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [61] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [85] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[109] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[121] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[127] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[145] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[157] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[163] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[169] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[175] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[181] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[187] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[193] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[199] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[205] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[211] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[217] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[229] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[235] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[241] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[247] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[253] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[259] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[265] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[271] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[277] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[283] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[289] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[295] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[301] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[307] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[313] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[319] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[325] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[331] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[337] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[343] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[349] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[355] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[361] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[367] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[373] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[379] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[385] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[391] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[397] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[403] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[409] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[415] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[421] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[427] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[433] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[439] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[445] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[451] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[457] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[463] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[469] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[475] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[481] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[487] "subtype1" "subtype3"
  [1] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [31] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [49] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [61] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [85] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[109] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[121] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[127] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[145] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[157] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[163] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[169] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[175] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[181] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[187] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[193] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[199] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[205] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[211] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[217] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[229] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[235] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[241] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[247] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[253] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[259] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[265] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[271] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[277] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[283] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[289] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[295] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[301] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[307] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[313] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[319] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[325] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[331] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[337] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[343] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[349] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[355] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[361] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[367] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[373] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[379] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[385] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[391] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[397] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[403] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[409] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[415] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[421] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[427] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[433] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[439] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[445] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[451] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[457] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[463] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[469] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[475] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[481] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[487] "subtype1" "subtype3"
D4V2, continuous
D4V3, binary
          cls
clus         0   1
  subtype1  59 114
  subtype2  80 101
  subtype3  49  85
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   59  114
  subtype2   80  101
  subtype3   49   85
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       59       80       49
  MALE        114      101       85
D4V4, continuous
          vv
clus       GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  subtype1                             3                   4
  subtype2                             1                   9
  subtype3                             2                   7
          vv
clus       UNTREATED PRIMARY (DE NOVO) GBM
  subtype1                             166
  subtype2                             171
  subtype3                             125
D4V5, multiclass
D4V6, binary
          cls
clus         0   1
  subtype1 117  56
  subtype2 124  57
  subtype3  95  39
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  117   56
  subtype2  124   57
  subtype3   95   39
     clus
vv    subtype1 subtype2 subtype3
  NO       117      124       95
  YES       56       57       39

Clustering(5) Variable = CN_CNMF
D5V1, survival
          sevent
clus2        0   1
  subtype1  34 125
  subtype2  50 162
  subtype3  49 132
subtype1 subtype2 subtype3 
     159      212      181 
subtype1 subtype2 subtype3 
     125      162      132 
$subtype1
TCGA-02-0001 TCGA-02-0007 TCGA-02-0010 TCGA-02-0024 TCGA-02-0039 TCGA-02-0048 
        9.14        23.18        35.41        53.06        10.52         3.19 
TCGA-02-0051 TCGA-02-0074 TCGA-02-0086 TCGA-02-0099 TCGA-02-0106 TCGA-02-0113 
       15.06        10.19         8.81         3.48        11.67        92.61 
TCGA-02-0258 TCGA-02-0266 TCGA-02-0271 TCGA-02-0281 TCGA-02-0324 TCGA-02-0330 
       16.54        17.69        14.47         3.98         7.69        15.91 
TCGA-02-0440 TCGA-02-0446 TCGA-02-2466 TCGA-06-0138 TCGA-06-0149 TCGA-06-0152 
       11.34         9.24        16.80        22.16         7.82        11.80 
TCGA-06-0162 TCGA-06-0166 TCGA-06-0168 TCGA-06-0171 TCGA-06-0173 TCGA-06-0177 
        2.56         5.29        19.04        13.02         0.23         1.97 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0188 TCGA-06-0195 TCGA-06-0206 TCGA-06-0209 
        2.53        40.37        28.47         7.04         6.44         3.88 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0241 
       12.43        22.49         0.33        18.02        11.80        14.96 
TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0644 TCGA-06-0646 TCGA-06-0649 
       70.52         4.67         8.05        12.33         4.47         2.04 
TCGA-06-0686 TCGA-06-0750 TCGA-06-0875 TCGA-06-0878 TCGA-06-1087 TCGA-06-1804 
        9.37         0.92         9.17         7.17         3.58        13.58 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-5408 TCGA-06-5411 
        1.08         0.76         4.90         9.27        11.21         8.35 
TCGA-06-5856 TCGA-06-5859 TCGA-06-6390 TCGA-06-6694 TCGA-06-6699 TCGA-08-0245 
        3.75         4.54         5.36         7.36         1.55        34.75 
TCGA-08-0349 TCGA-08-0520 TCGA-12-0615 TCGA-12-0616 TCGA-12-0619 TCGA-12-0653 
        7.59        10.72        14.01        14.40        10.39        10.52 
TCGA-12-0654 TCGA-12-0662 TCGA-12-0691 TCGA-12-0692 TCGA-12-0772 TCGA-12-0821 
        7.17        38.17         6.08         2.63        53.10        10.62 
TCGA-12-0826 TCGA-12-1088 TCGA-12-1089 TCGA-12-1091 TCGA-12-1096 TCGA-12-1098 
       27.78       127.56         5.82        30.54         9.11         3.98 
TCGA-12-1099 TCGA-12-1598 TCGA-12-1602 TCGA-12-3646 TCGA-12-3651 TCGA-12-3653 
        3.39         9.44         6.38        43.20        11.77        11.74 
TCGA-12-5295 TCGA-14-0736 TCGA-14-0783 TCGA-14-0813 TCGA-14-0817 TCGA-14-0865 
       13.08        15.09         6.18         1.35         5.39        16.50 
TCGA-14-0871 TCGA-14-1396 TCGA-14-1451 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
       28.90         1.12        23.11         1.15        30.15         0.92 
TCGA-14-1823 TCGA-14-1825 TCGA-14-3477 TCGA-15-0742 TCGA-15-1449 TCGA-16-0848 
       17.82         7.63         3.75         9.86         5.49         9.93 
TCGA-16-0861 TCGA-16-1045 TCGA-19-0957 TCGA-19-1390 TCGA-19-1392 TCGA-19-1787 
        4.27        29.00        21.86        25.38         3.48        12.66 
TCGA-19-1791 TCGA-19-2623 TCGA-19-2629 TCGA-19-5947 TCGA-19-5960 TCGA-26-1438 
        0.13         7.53        16.47         6.64         5.42        10.03 
TCGA-26-1439 TCGA-26-1440 TCGA-26-5134 TCGA-26-5135 TCGA-27-1830 TCGA-27-1832 
       13.87         9.73         5.49         8.84         4.80         9.86 
TCGA-27-1834 TCGA-27-1835 TCGA-27-2519 TCGA-28-1746 TCGA-28-1750 TCGA-28-2506 
       33.14        21.30        10.39         0.20         8.32         6.74 
TCGA-28-2509 TCGA-28-5207 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5220 
        4.77         9.04         7.79        13.64         4.21        10.49 
TCGA-32-1976 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-4208 
        0.49        15.95         7.33         8.84         8.88        13.15 
TCGA-32-4210 TCGA-32-4211 TCGA-32-5222 TCGA-41-2571 TCGA-41-2573 TCGA-41-2575 
        3.68        12.59         5.42         0.85         8.94         9.53 
TCGA-41-3392 TCGA-41-5651 TCGA-74-6577 TCGA-74-6584 TCGA-76-4929 TCGA-76-4934 
        0.99        11.54         4.31         7.46         3.65         2.53 
TCGA-76-4935 TCGA-76-6285 TCGA-76-6286 
       10.78         8.32        20.94 

$subtype2
TCGA-02-0003 TCGA-02-0009 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 
        4.73        10.59        20.61        55.86        77.62        20.12 
TCGA-02-0037 TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0064 TCGA-02-0068 
        3.58        10.72        18.28         6.84        19.73        26.43 
TCGA-02-0070 TCGA-02-0071 TCGA-02-0089 TCGA-02-0102 TCGA-02-0116 TCGA-02-0260 
       25.05         5.49        16.93        26.99        48.95        16.90 
TCGA-02-0269 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0333 
       10.75        13.87        14.20        15.95        12.23         4.37 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0451 TCGA-02-2485 TCGA-02-2486 TCGA-06-0122 
       14.50        10.55        16.18        15.42        16.18         0.26 
TCGA-06-0124 TCGA-06-0125 TCGA-06-0126 TCGA-06-0133 TCGA-06-0137 TCGA-06-0145 
        4.04        47.31         0.10        14.07        23.05         2.33 
TCGA-06-0148 TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        9.80        19.46        46.59        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0174 TCGA-06-0175 TCGA-06-0185 TCGA-06-0187 TCGA-06-0208 
        5.46         2.20         2.73        37.02        26.33         5.46 
TCGA-06-0211 TCGA-06-0237 TCGA-06-0402 TCGA-06-0645 TCGA-06-0648 TCGA-06-0743 
       11.84        10.32         0.26         3.22         9.63        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0876 TCGA-06-0877 TCGA-06-0879 
       19.53         5.36         2.70         8.91         6.71        22.98 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
       26.79         8.65         7.86         2.83         8.52         5.95 
TCGA-06-2565 TCGA-06-2567 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 
        6.81         4.37         8.81         8.98         8.55         2.73 
TCGA-06-6388 TCGA-06-6693 TCGA-06-6695 TCGA-08-0244 TCGA-08-0348 TCGA-08-0352 
        3.91         0.49         8.28        22.68        10.39         1.28 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0386 TCGA-08-0389 TCGA-08-0510 TCGA-08-0514 TCGA-08-0518 
        9.17        15.72         3.19         3.48         8.52         1.28 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0618 TCGA-12-0620 TCGA-12-0656 
       15.98        17.29         5.52         1.61         5.95        65.88 
TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
        0.10        25.97        24.13        18.08        28.37        12.43 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0828 TCGA-12-1094 
       14.83        14.27        24.76        18.48         8.91        11.38 
TCGA-12-1095 TCGA-12-1097 TCGA-12-1599 TCGA-12-1600 TCGA-12-3644 TCGA-12-3648 
       15.85        14.53        25.28        13.61        59.41        25.78 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-5299 TCGA-12-5301 TCGA-14-0786 
       11.54        10.95        34.52         3.22         2.01        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 
        2.24        11.24        13.74        26.33        15.95         1.38 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1452 TCGA-14-1459 TCGA-14-1795 
        3.75        32.02        58.78         7.10        12.43         1.94 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-15-1446 TCGA-16-1047 
        5.88         7.13        17.49         7.96        19.10         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-19-0962 
        9.90        13.35         3.65        18.28        13.97         0.43 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1386 TCGA-19-1387 TCGA-19-1786 TCGA-19-1789 
       14.27         3.39         9.07         5.95         7.13         3.25 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2624 TCGA-19-2631 TCGA-19-5950 
        9.67         4.87         1.08         0.16         7.00        11.28 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5954 TCGA-19-5959 TCGA-26-1443 TCGA-26-1799 
        8.02        18.64         7.96         5.29         7.10         9.37 
TCGA-26-5132 TCGA-26-5136 TCGA-26-5139 TCGA-27-1831 TCGA-27-1833 TCGA-27-1837 
        9.40         1.22         1.58        16.57        18.25        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2528 
       11.51        24.72        16.08         7.59         2.86        15.75 
TCGA-28-1747 TCGA-28-1749 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2514 
        2.53         9.17         1.18         1.51         0.13         5.26 
TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5214 TCGA-28-5219 TCGA-28-6450 
        3.91        15.55         2.53        14.20         8.52         5.42 
TCGA-32-1970 TCGA-32-1978 TCGA-32-1979 TCGA-32-1982 TCGA-32-1991 TCGA-32-2494 
       15.35        15.85        19.50         4.67        16.93        20.78 
TCGA-32-2495 TCGA-32-2638 TCGA-32-4213 TCGA-32-4719 TCGA-41-2572 TCGA-41-3393 
       14.99         7.36        11.70        10.85        13.35         4.44 
TCGA-74-6573 TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4931 
        3.45        14.33         8.22         4.77         4.54         9.14 
TCGA-76-6191 TCGA-76-6280 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-81-5910 
       16.67        11.38         4.83         5.03         0.23         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.69         0.07 

$subtype3
TCGA-02-0006 TCGA-02-0011 TCGA-02-0014 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 
       18.35        20.71        82.55        42.74        24.59        10.36 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0047 TCGA-02-0052 TCGA-02-0054 
       90.58         2.83        14.14        14.70        12.59         6.54 
TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0069 
        2.50        19.86         8.35         9.57         6.02        28.70 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 
       20.84        27.22        89.72        22.72         0.23        51.29 
TCGA-02-0087 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 TCGA-02-0114 TCGA-02-0115 
       57.76        65.00        17.65        23.15        99.95        15.65 
TCGA-02-0321 TCGA-02-0325 TCGA-02-0326 TCGA-02-0332 TCGA-02-0337 TCGA-02-0338 
        9.86        10.62         0.16        25.71        25.12        10.59 
TCGA-02-0339 TCGA-02-0432 TCGA-02-0456 TCGA-02-2470 TCGA-02-2483 TCGA-06-0119 
       12.39        47.11         3.35        12.92        15.29         2.70 
TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0139 
        3.55        22.72        32.48        10.52        18.74        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0146 TCGA-06-0147 
        0.20         9.21         2.20        11.74        20.09        16.70 
TCGA-06-0159 TCGA-06-0160 TCGA-06-0164 TCGA-06-0165 TCGA-06-0169 TCGA-06-0176 
        9.44        11.80        56.84        10.65         3.12        51.32 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       53.98        19.00        14.93        10.29        18.28         4.67 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0210 TCGA-06-0213 TCGA-06-0394 TCGA-06-0397 
        2.60         0.39         4.96         0.20        10.29         5.52 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0650 TCGA-06-0749 TCGA-06-0881 TCGA-06-0882 
        0.16        35.01        23.57         2.14         5.85         5.42 
TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 TCGA-06-1805 TCGA-06-2566 TCGA-06-2569 
       20.94         7.43         6.35         4.18         5.98         0.43 
TCGA-06-2570 TCGA-06-5410 TCGA-06-5412 TCGA-06-5416 TCGA-06-5858 TCGA-06-6389 
        9.37         3.52         4.54         6.71         6.12         7.76 
TCGA-06-6391 TCGA-06-6697 TCGA-06-6698 TCGA-06-6700 TCGA-06-6701 TCGA-08-0246 
        1.45        12.85         4.77         4.77         4.96         3.91 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 TCGA-08-0350 TCGA-08-0351 
      108.82         1.74         4.34        13.78         3.39        53.79 
TCGA-08-0353 TCGA-08-0380 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 
        6.41        10.85        10.59         0.30         0.56        11.77 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0521 TCGA-08-0524 TCGA-12-0773 TCGA-12-0775 
       18.44        58.19         4.80         6.51        43.10         5.49 
TCGA-12-0776 TCGA-12-0818 TCGA-12-0822 TCGA-12-0827 TCGA-12-0829 TCGA-12-1090 
        9.11        91.73        23.51        38.76        20.58         6.21 
TCGA-12-1092 TCGA-12-1093 TCGA-14-0740 TCGA-14-0781 TCGA-14-0812 TCGA-14-0862 
       21.63        11.97        11.97         0.95         3.25         2.89 
TCGA-14-0867 TCGA-14-1037 TCGA-14-1043 TCGA-14-1456 TCGA-14-1458 TCGA-14-1794 
        2.04        19.30         0.79        40.93         6.12         0.99 
TCGA-14-1821 TCGA-14-4157 TCGA-15-1447 TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 
       17.75         3.39        53.19         3.91        26.07        16.31 
TCGA-16-1460 TCGA-19-0955 TCGA-19-0960 TCGA-19-1385 TCGA-19-1388 TCGA-19-1389 
        6.41        11.77         8.61        10.75        12.95         4.64 
TCGA-19-2625 TCGA-19-4065 TCGA-19-5953 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
        4.08         7.04         4.73         1.78         6.51         5.39 
TCGA-26-1442 TCGA-26-5133 TCGA-26-6173 TCGA-26-6174 TCGA-27-1836 TCGA-27-2521 
       31.33        14.86         7.92         2.30        30.05        10.39 
TCGA-27-2527 TCGA-28-1751 TCGA-28-1752 TCGA-28-1756 TCGA-28-2502 TCGA-28-2513 
       14.40         7.59         8.45         2.83         0.66         7.30 
TCGA-28-5211 TCGA-28-5213 TCGA-32-1973 TCGA-32-1977 TCGA-32-1980 TCGA-32-1986 
       11.77         9.80        21.07         0.10         1.18        12.69 
TCGA-32-1987 TCGA-32-2491 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-74-6575 
       14.83        12.23         6.02         0.20         7.73        17.52 
TCGA-76-4928 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6662 TCGA-76-6663 
        3.09         3.29         2.70        17.06         9.24         7.69 
TCGA-76-6664 
        7.76 

subtype1 subtype2 subtype3 
    0.13     0.07     0.10 
subtype1 subtype2 subtype3 
  127.56    77.62   108.82 
subtype1 subtype2 subtype3 
    9.14    10.11     9.86 
[1] "0.1 - 127.6 (9.1)" "0.1 - 77.6 (10.1)" "0.1 - 108.8 (9.9)"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [55] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [73] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[115] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[133] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[139] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[151] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[163] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[169] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[175] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[181] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[187] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[199] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[211] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[217] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[223] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[229] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[235] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[241] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[247] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[253] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[259] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[265] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[271] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[277] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[283] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[289] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[295] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[301] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[307] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[313] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[319] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[325] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[331] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[337] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[343] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[349] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[355] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[361] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[367] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[373] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[379] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[385] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[391] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[397] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[403] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[409] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[415] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[421] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[427] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[433] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[439] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[445] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[451] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[457] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[463] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[469] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[475] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[481] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[487] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[493] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[499] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[505] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[511] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[517] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[523] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[529] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[535] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[541] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[547] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [55] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [73] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[115] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[133] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[139] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[151] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[163] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[169] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[175] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[181] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[187] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[199] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[211] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[217] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[223] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[229] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[235] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[241] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[247] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[253] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[259] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[265] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[271] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[277] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[283] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[289] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[295] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[301] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[307] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[313] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[319] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[325] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[331] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[337] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[343] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[349] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[355] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[361] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[367] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[373] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[379] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[385] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[391] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[397] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[403] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[409] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[415] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[421] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[427] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[433] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[439] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[445] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[451] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[457] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[463] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[469] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[475] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[481] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[487] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[493] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[499] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[505] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[511] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[517] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[523] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[529] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[535] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[541] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[547] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [55] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [73] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[115] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[133] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[139] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[151] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[163] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[169] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[175] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[181] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[187] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[199] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[211] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[217] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[223] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[229] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[235] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[241] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[247] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[253] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[259] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[265] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[271] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[277] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[283] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[289] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[295] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[301] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[307] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[313] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[319] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[325] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[331] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[337] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[343] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[349] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[355] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[361] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[367] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[373] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[379] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[385] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[391] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[397] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[403] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[409] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[415] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[421] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[427] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[433] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[439] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[445] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[451] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[457] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[463] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[469] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[475] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[481] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[487] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[493] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[499] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[505] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[511] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[517] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[523] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[529] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[535] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[541] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[547] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
D5V2, continuous
D5V3, binary
          cls
clus         0   1
  subtype1  68  91
  subtype2  78 134
  subtype3  72 109
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   68   91
  subtype2   78  134
  subtype3   72  109
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       68       78       72
  MALE         91      134      109
D5V4, continuous
          vv
clus       GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  subtype1                             0                   5
  subtype2                             2                   5
  subtype3                             6                   8
          vv
clus       UNTREATED PRIMARY (DE NOVO) GBM
  subtype1                             154
  subtype2                             205
  subtype3                             167
D5V5, multiclass
D5V6, binary
          cls
clus         0   1
  subtype1 102  57
  subtype2 149  63
  subtype3 130  51
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  102   57
  subtype2  149   63
  subtype3  130   51
     clus
vv    subtype1 subtype2 subtype3
  NO       102      149      130
  YES       57       63       51

Clustering(6) Variable = METHLYATION_CNMF
D6V1, survival
          sevent
clus2       0  1
  subtype1 17 18
  subtype2 13 14
  subtype3  7 10
  subtype4 16 11
subtype1 subtype2 subtype3 subtype4 
      35       27       17       27 
subtype1 subtype2 subtype3 subtype4 
      18       14       10       11 
$subtype1
TCGA-06-0650 TCGA-06-5410 TCGA-06-5412 TCGA-06-5858 TCGA-06-6390 TCGA-06-6697 
       23.57         3.52         4.54         6.12         5.36        12.85 
TCGA-06-6698 TCGA-06-6700 TCGA-14-0781 TCGA-14-0862 TCGA-14-1043 TCGA-14-1450 
        4.77         4.77         0.95         2.89         0.79        58.78 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5953 TCGA-19-5955 TCGA-19-5958 
        7.04         6.64        11.28         4.73         1.78         5.39 
TCGA-26-5136 TCGA-26-6173 TCGA-28-5211 TCGA-28-5213 TCGA-28-5218 TCGA-28-6450 
        1.22         7.92        11.77         9.80         4.21         5.42 
TCGA-32-1980 TCGA-41-6646 TCGA-74-6575 TCGA-76-4928 TCGA-76-6192 TCGA-76-6193 
        1.18         7.73        17.52         3.09         3.29         2.70 
TCGA-76-6282 TCGA-76-6657 TCGA-76-6662 TCGA-76-6663 TCGA-81-5911 
       17.06         5.03         9.24         7.69        17.69 

$subtype2
TCGA-06-1804 TCGA-06-5413 TCGA-06-5856 TCGA-06-6388 TCGA-06-6693 TCGA-06-6695 
       13.58         8.81         3.75         3.91         0.49         8.28 
TCGA-06-6699 TCGA-12-5295 TCGA-14-1395 TCGA-19-5951 TCGA-19-5959 TCGA-19-5960 
        1.55        13.08         1.38         8.02         5.29         5.42 
TCGA-26-5132 TCGA-26-5139 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5220 
        9.40         1.58         9.04        15.55         2.53        10.49 
TCGA-32-1979 TCGA-32-5222 TCGA-74-6578 TCGA-76-4925 TCGA-76-4927 TCGA-76-6280 
       19.50         5.42        14.33         4.77        17.59        11.38 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6664 
       20.94         4.83         7.76 

$subtype3
TCGA-06-5408 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-12-5299 TCGA-19-5952 
       11.21         8.98         8.55         2.73         3.22        18.64 
TCGA-19-5954 TCGA-28-5204 TCGA-28-5214 TCGA-74-6573 TCGA-74-6581 TCGA-76-4926 
        7.96         3.91        14.20         3.45         8.22         4.54 
TCGA-76-4931 TCGA-76-4932 TCGA-76-6661 TCGA-81-5910 TCGA-87-5896 
        9.14        47.93         0.23         1.61         0.07 

$subtype4
TCGA-06-5411 TCGA-06-5416 TCGA-06-5417 TCGA-06-5859 TCGA-06-6389 TCGA-06-6391 
        8.35         6.71         5.10         4.54         7.76         1.45 
TCGA-06-6694 TCGA-06-6701 TCGA-12-5301 TCGA-14-0740 TCGA-19-5956 TCGA-26-1442 
        7.36         4.96         2.01        11.97         6.51        31.33 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-6174 TCGA-28-5215 TCGA-28-5216 
       14.86         5.49         8.84         2.30         7.79        13.64 
TCGA-28-5219 TCGA-41-5651 TCGA-74-6577 TCGA-74-6584 TCGA-76-4929 TCGA-76-4934 
        8.52        11.54         4.31         7.46         3.65         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6285 
       10.78        16.67         8.32 

subtype1 subtype2 subtype3 subtype4 
    0.79     0.49     0.07     1.45 
subtype1 subtype2 subtype3 subtype4 
   58.78    20.94    47.93    31.33 
subtype1 subtype2 subtype3 subtype4 
    5.39     8.02     7.96     7.46 
[1] "0.8 - 58.8 (5.4)" "0.5 - 20.9 (8.0)" "0.1 - 47.9 (8.0)" "1.4 - 31.3 (7.5)"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype4" "subtype1"
  [7] "subtype2" "subtype3" "subtype3" "subtype4" "subtype4" "subtype3"
 [13] "subtype2" "subtype1" "subtype4" "subtype2" "subtype4" "subtype1"
 [19] "subtype4" "subtype2" "subtype4" "subtype2" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype4" "subtype2" "subtype3" "subtype4"
 [31] "subtype4" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [43] "subtype3" "subtype1" "subtype4" "subtype1" "subtype2" "subtype2"
 [49] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype1"
 [55] "subtype2" "subtype1" "subtype4" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
 [67] "subtype1" "subtype4" "subtype2" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype4" "subtype1" "subtype3" "subtype1" "subtype4"
 [79] "subtype2" "subtype3" "subtype4" "subtype2" "subtype3" "subtype2"
 [85] "subtype1" "subtype4" "subtype3" "subtype3" "subtype4" "subtype4"
 [91] "subtype4" "subtype1" "subtype1" "subtype2" "subtype1" "subtype4"
 [97] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[103] "subtype2" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype4" "subtype1"
  [7] "subtype2" "subtype3" "subtype3" "subtype4" "subtype4" "subtype3"
 [13] "subtype2" "subtype1" "subtype4" "subtype2" "subtype4" "subtype1"
 [19] "subtype4" "subtype2" "subtype4" "subtype2" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype4" "subtype2" "subtype3" "subtype4"
 [31] "subtype4" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [43] "subtype3" "subtype1" "subtype4" "subtype1" "subtype2" "subtype2"
 [49] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype1"
 [55] "subtype2" "subtype1" "subtype4" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
 [67] "subtype1" "subtype4" "subtype2" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype4" "subtype1" "subtype3" "subtype1" "subtype4"
 [79] "subtype2" "subtype3" "subtype4" "subtype2" "subtype3" "subtype2"
 [85] "subtype1" "subtype4" "subtype3" "subtype3" "subtype4" "subtype4"
 [91] "subtype4" "subtype1" "subtype1" "subtype2" "subtype1" "subtype4"
 [97] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[103] "subtype2" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype4" "subtype1"
  [7] "subtype2" "subtype3" "subtype3" "subtype4" "subtype4" "subtype3"
 [13] "subtype2" "subtype1" "subtype4" "subtype2" "subtype4" "subtype1"
 [19] "subtype4" "subtype2" "subtype4" "subtype2" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype4" "subtype2" "subtype3" "subtype4"
 [31] "subtype4" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [43] "subtype3" "subtype1" "subtype4" "subtype1" "subtype2" "subtype2"
 [49] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype1"
 [55] "subtype2" "subtype1" "subtype4" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
 [67] "subtype1" "subtype4" "subtype2" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype4" "subtype1" "subtype3" "subtype1" "subtype4"
 [79] "subtype2" "subtype3" "subtype4" "subtype2" "subtype3" "subtype2"
 [85] "subtype1" "subtype4" "subtype3" "subtype3" "subtype4" "subtype4"
 [91] "subtype4" "subtype1" "subtype1" "subtype2" "subtype1" "subtype4"
 [97] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[103] "subtype2" "subtype3" "subtype1" "subtype3"
D6V2, continuous
D6V3, binary
          cls
clus        0  1
  subtype1 13 22
  subtype2 11 16
  subtype3  7 10
  subtype4 16 11
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   13   22
  subtype2   11   16
  subtype3    7   10
  subtype4   16   11
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       13       11        7       16
  MALE         22       16       10       11
D6V4, continuous
          vv
clus       TREATED PRIMARY GBM UNTREATED PRIMARY (DE NOVO) GBM
  subtype1                   0                              35
  subtype2                   0                              27
  subtype3                   1                              16
  subtype4                   0                              27
D6V5, multiclass
                                 clus
vv                                subtype1 subtype2 subtype3 subtype4
  TREATED PRIMARY GBM                    0        0        1        0
  UNTREATED PRIMARY (DE NOVO) GBM       35       27       16       27
D6V6, binary
          cls
clus        0  1
  subtype1 28  7
  subtype2 16 11
  subtype3 13  4
  subtype4 20  7
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   28    7
  subtype2   16   11
  subtype3   13    4
  subtype4   20    7
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        28       16       13       20
  YES        7       11        4        7

Clustering(7) Variable = RPPA_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 16 41
  subtype2 22 38
  subtype3 17 27
  subtype4 18 31
subtype1 subtype2 subtype3 subtype4 
      57       60       44       49 
subtype1 subtype2 subtype3 subtype4 
      41       38       27       31 
$subtype1
TCGA-02-0003 TCGA-02-0004 TCGA-02-0068 TCGA-02-0069 TCGA-02-0116 TCGA-02-2470 
        4.73        11.34        26.43        28.70        48.95        12.92 
TCGA-06-0128 TCGA-06-0130 TCGA-06-0154 TCGA-06-0155 TCGA-06-0171 TCGA-06-0189 
       22.72        10.52        12.79         8.65        13.02        14.93 
TCGA-06-0238 TCGA-06-0650 TCGA-06-0882 TCGA-06-1084 TCGA-06-1802 TCGA-06-2557 
       11.80        23.57         5.42         7.43         7.86         1.08 
TCGA-06-2567 TCGA-06-5410 TCGA-06-5412 TCGA-06-5416 TCGA-06-6697 TCGA-08-0245 
        4.37         3.52         4.54         6.71        12.85        34.75 
TCGA-08-0348 TCGA-08-0352 TCGA-08-0353 TCGA-08-0373 TCGA-14-0871 TCGA-15-1447 
       10.39         1.28         6.41         4.41        28.90        53.19 
TCGA-19-1389 TCGA-19-1790 TCGA-19-2625 TCGA-19-2631 TCGA-19-5947 TCGA-19-5952 
        4.64         5.03         4.08         7.00         6.64        18.64 
TCGA-19-5953 TCGA-26-5133 TCGA-26-5134 TCGA-27-1832 TCGA-27-2528 TCGA-28-1750 
        4.73        14.86         5.49         9.86        15.75         8.32 
TCGA-28-1753 TCGA-28-1757 TCGA-28-5214 TCGA-32-1982 TCGA-32-1986 TCGA-32-4211 
        1.18         0.13        14.20         4.67        12.69        12.59 
TCGA-41-3393 TCGA-41-3915 TCGA-41-6646 TCGA-74-6573 TCGA-76-4926 TCGA-76-4927 
        4.44         6.02         7.73         3.45         4.54        17.59 
TCGA-76-4928 TCGA-76-6282 TCGA-76-6662 
        3.09        17.06         9.24 

$subtype2
TCGA-02-0011 TCGA-02-0014 TCGA-06-0129 TCGA-06-0875 TCGA-06-1804 TCGA-06-1805 
       20.71        82.55        32.48         9.17        13.58         4.18 
TCGA-06-2558 TCGA-06-2564 TCGA-06-2566 TCGA-06-2570 TCGA-06-5411 TCGA-06-5417 
        0.76         5.95         5.98         9.37         8.35         5.10 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6391 TCGA-06-6695 TCGA-06-6700 TCGA-06-6701 
        3.91         7.76         1.45         8.28         4.77         4.96 
TCGA-08-0344 TCGA-08-0347 TCGA-08-0350 TCGA-08-0351 TCGA-08-0359 TCGA-08-0380 
      108.82        13.78         3.39        53.79         0.95        10.85 
TCGA-08-0385 TCGA-08-0389 TCGA-12-0691 TCGA-12-1597 TCGA-12-3649 TCGA-12-3651 
        1.02         3.19         6.08        14.04        11.54        11.77 
TCGA-14-0813 TCGA-15-1449 TCGA-16-0846 TCGA-16-1460 TCGA-19-0957 TCGA-19-0962 
        1.35         5.49         3.91         6.41        21.86         0.43 
TCGA-19-1390 TCGA-19-1786 TCGA-19-1788 TCGA-19-2620 TCGA-19-5956 TCGA-19-5958 
       25.38         7.13         3.65         4.87         6.51         5.39 
TCGA-19-5960 TCGA-26-1442 TCGA-26-6174 TCGA-27-1834 TCGA-27-1836 TCGA-27-2518 
        5.42        31.33         2.30        33.14        30.05        24.72 
TCGA-28-1746 TCGA-32-1976 TCGA-32-4210 TCGA-32-5222 TCGA-41-2573 TCGA-41-2575 
        0.20         0.49         3.68         5.42         8.94         9.53 
TCGA-41-5651 TCGA-74-6581 TCGA-76-6193 TCGA-76-6285 TCGA-76-6657 TCGA-76-6663 
       11.54         8.22         2.70         8.32         5.03         7.69 

$subtype3
TCGA-02-2485 TCGA-06-0126 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-2563 
       15.42         0.10         8.91         6.71         7.17         8.52 
TCGA-06-2565 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5856 TCGA-06-6693 
        6.81         8.81         8.98         8.55         3.75         0.49 
TCGA-06-6699 TCGA-08-0349 TCGA-08-0354 TCGA-08-0357 TCGA-08-0358 TCGA-08-0375 
        1.55         7.59        15.06        35.64        19.50         9.17 
TCGA-08-0386 TCGA-12-3646 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       15.72        43.20        10.95        34.52        11.74        13.08 
TCGA-14-1823 TCGA-15-1446 TCGA-19-1386 TCGA-19-1789 TCGA-19-1791 TCGA-19-5950 
       17.82        19.10         9.07         3.25         0.13        11.28 
TCGA-19-5951 TCGA-19-5959 TCGA-26-1440 TCGA-26-5132 TCGA-27-1831 TCGA-27-1833 
        8.02         5.29         9.73         9.40        16.57        18.25 
TCGA-28-1747 TCGA-28-1752 TCGA-32-1970 TCGA-32-1978 TCGA-32-1991 TCGA-41-3392 
        2.53         8.45        15.35        15.85        16.93         0.99 
TCGA-76-4931 TCGA-76-6656 
        9.14         4.83 

$subtype4
TCGA-06-0125 TCGA-06-0156 TCGA-06-0644 TCGA-06-0879 TCGA-06-0939 TCGA-06-1086 
       47.31         5.39        12.33        22.98        20.94         6.35 
TCGA-06-1087 TCGA-06-1800 TCGA-06-2559 TCGA-06-2562 TCGA-06-5408 TCGA-06-5418 
        3.58        26.79         4.90         2.83        11.21         2.73 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6390 TCGA-06-6694 TCGA-06-6698 TCGA-08-0345 
        6.12         4.54         5.36         7.36         4.77         1.74 
TCGA-08-0346 TCGA-08-0355 TCGA-08-0356 TCGA-08-0360 TCGA-08-0390 TCGA-08-0392 
        4.34        22.52        14.70        11.57        10.59         0.30 
TCGA-12-0692 TCGA-12-1598 TCGA-12-1599 TCGA-12-5301 TCGA-14-0862 TCGA-19-1392 
        2.63         9.44        25.28         2.01         2.89         3.48 
TCGA-19-2619 TCGA-19-4068 TCGA-19-5954 TCGA-19-5955 TCGA-26-6173 TCGA-27-1830 
        9.67         4.47         7.96         1.78         7.92         4.80 
TCGA-28-1760 TCGA-28-5208 TCGA-32-1987 TCGA-41-4097 TCGA-74-6575 TCGA-74-6577 
        4.70        15.55        14.83         0.20        17.52         4.31 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4929 TCGA-76-4932 TCGA-76-6192 TCGA-76-6664 
       14.33         7.46         3.65        47.93         3.29         7.76 
TCGA-81-5910 
        1.61 

subtype1 subtype2 subtype3 subtype4 
    0.13     0.20     0.10     0.20 
subtype1 subtype2 subtype3 subtype4 
   53.19   108.82    43.20    47.93 
subtype1 subtype2 subtype3 subtype4 
   8.320    6.460    9.105    6.120 
[1] "0.1 - 53.2 (8.3)"  "0.2 - 108.8 (6.5)" "0.1 - 43.2 (9.1)" 
[4] "0.2 - 47.9 (6.1)" 
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype3" "subtype4" "subtype3" "subtype1"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
 [19] "subtype1" "subtype1" "subtype4" "subtype1" "subtype2" "subtype3"
 [25] "subtype3" "subtype3" "subtype4" "subtype1" "subtype4" "subtype1"
 [31] "subtype4" "subtype4" "subtype4" "subtype1" "subtype2" "subtype2"
 [37] "subtype1" "subtype2" "subtype4" "subtype4" "subtype3" "subtype2"
 [43] "subtype3" "subtype2" "subtype1" "subtype2" "subtype4" "subtype1"
 [49] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [55] "subtype2" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
 [61] "subtype2" "subtype4" "subtype2" "subtype3" "subtype4" "subtype2"
 [67] "subtype1" "subtype4" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype4" "subtype4" "subtype2" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype4"
 [85] "subtype4" "subtype3" "subtype3" "subtype2" "subtype4" "subtype1"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype4"
 [97] "subtype4" "subtype2" "subtype4" "subtype2" "subtype4" "subtype4"
[103] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype4" "subtype2" "subtype4" "subtype1" "subtype3"
[115] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype2"
[127] "subtype2" "subtype3" "subtype1" "subtype3" "subtype4" "subtype2"
[133] "subtype1" "subtype1" "subtype4" "subtype1" "subtype3" "subtype3"
[139] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[151] "subtype1" "subtype4" "subtype2" "subtype4" "subtype3" "subtype1"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[163] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype4"
[169] "subtype4" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[175] "subtype1" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype4"
[187] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[193] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype4"
[199] "subtype3" "subtype4" "subtype4" "subtype2" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype1" "subtype2" "subtype4" "subtype4"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype3" "subtype4" "subtype3" "subtype1"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
 [19] "subtype1" "subtype1" "subtype4" "subtype1" "subtype2" "subtype3"
 [25] "subtype3" "subtype3" "subtype4" "subtype1" "subtype4" "subtype1"
 [31] "subtype4" "subtype4" "subtype4" "subtype1" "subtype2" "subtype2"
 [37] "subtype1" "subtype2" "subtype4" "subtype4" "subtype3" "subtype2"
 [43] "subtype3" "subtype2" "subtype1" "subtype2" "subtype4" "subtype1"
 [49] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [55] "subtype2" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
 [61] "subtype2" "subtype4" "subtype2" "subtype3" "subtype4" "subtype2"
 [67] "subtype1" "subtype4" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype4" "subtype4" "subtype2" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype4"
 [85] "subtype4" "subtype3" "subtype3" "subtype2" "subtype4" "subtype1"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype4"
 [97] "subtype4" "subtype2" "subtype4" "subtype2" "subtype4" "subtype4"
[103] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype4" "subtype2" "subtype4" "subtype1" "subtype3"
[115] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype2"
[127] "subtype2" "subtype3" "subtype1" "subtype3" "subtype4" "subtype2"
[133] "subtype1" "subtype1" "subtype4" "subtype1" "subtype3" "subtype3"
[139] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[151] "subtype1" "subtype4" "subtype2" "subtype4" "subtype3" "subtype1"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[163] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype4"
[169] "subtype4" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[175] "subtype1" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype4"
[187] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[193] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype4"
[199] "subtype3" "subtype4" "subtype4" "subtype2" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype1" "subtype2" "subtype4" "subtype4"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype3" "subtype4" "subtype3" "subtype1"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
 [19] "subtype1" "subtype1" "subtype4" "subtype1" "subtype2" "subtype3"
 [25] "subtype3" "subtype3" "subtype4" "subtype1" "subtype4" "subtype1"
 [31] "subtype4" "subtype4" "subtype4" "subtype1" "subtype2" "subtype2"
 [37] "subtype1" "subtype2" "subtype4" "subtype4" "subtype3" "subtype2"
 [43] "subtype3" "subtype2" "subtype1" "subtype2" "subtype4" "subtype1"
 [49] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [55] "subtype2" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
 [61] "subtype2" "subtype4" "subtype2" "subtype3" "subtype4" "subtype2"
 [67] "subtype1" "subtype4" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype4" "subtype4" "subtype2" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype4"
 [85] "subtype4" "subtype3" "subtype3" "subtype2" "subtype4" "subtype1"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype4"
 [97] "subtype4" "subtype2" "subtype4" "subtype2" "subtype4" "subtype4"
[103] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype4" "subtype2" "subtype4" "subtype1" "subtype3"
[115] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype2"
[127] "subtype2" "subtype3" "subtype1" "subtype3" "subtype4" "subtype2"
[133] "subtype1" "subtype1" "subtype4" "subtype1" "subtype3" "subtype3"
[139] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[151] "subtype1" "subtype4" "subtype2" "subtype4" "subtype3" "subtype1"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[163] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype4"
[169] "subtype4" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[175] "subtype1" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype4"
[187] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[193] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype4"
[199] "subtype3" "subtype4" "subtype4" "subtype2" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype1" "subtype2" "subtype4" "subtype4"
D7V2, continuous
D7V3, binary
          cls
clus        0  1
  subtype1 17 40
  subtype2 26 34
  subtype3 18 26
  subtype4 24 25
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17   40
  subtype2   26   34
  subtype3   18   26
  subtype4   24   25
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       17       26       18       24
  MALE         40       34       26       25
D7V4, continuous
          vv
clus       TREATED PRIMARY GBM UNTREATED PRIMARY (DE NOVO) GBM
  subtype1                   2                              55
  subtype2                   0                              60
  subtype3                   0                              44
  subtype4                   1                              48
D7V5, multiclass
                                 clus
vv                                subtype1 subtype2 subtype3 subtype4
  TREATED PRIMARY GBM                    2        0        0        1
  UNTREATED PRIMARY (DE NOVO) GBM       55       60       44       48
D7V6, binary
          cls
clus        0  1
  subtype1 42 15
  subtype2 43 17
  subtype3 37  7
  subtype4 33 16
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   42   15
  subtype2   43   17
  subtype3   37    7
  subtype4   33   16
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        42       43       37       33
  YES       15       17        7       16

Clustering(8) Variable = RPPA_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1 22 42
  subtype2 11 24
  subtype3 40 71
subtype1 subtype2 subtype3 
      64       35      111 
subtype1 subtype2 subtype3 
      42       24       71 
$subtype1
TCGA-02-2485 TCGA-06-0126 TCGA-06-0154 TCGA-06-0155 TCGA-06-0876 TCGA-06-0877 
       15.42         0.10        12.79         8.65         8.91         6.71 
TCGA-06-0878 TCGA-06-2557 TCGA-06-2563 TCGA-06-2565 TCGA-06-2567 TCGA-06-5408 
        7.17         1.08         8.52         6.81         4.37        11.21 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5856 TCGA-06-6693 TCGA-06-6699 
        8.81         8.98         8.55         3.75         0.49         1.55 
TCGA-08-0349 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0357 
        7.59         1.28         6.41        15.06        22.52        35.64 
TCGA-08-0358 TCGA-08-0375 TCGA-08-0386 TCGA-12-3646 TCGA-12-3650 TCGA-12-3652 
       19.50         9.17        15.72        43.20        10.95        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-14-1823 TCGA-15-1446 TCGA-19-1386 TCGA-19-1786 
       11.74        13.08        17.82        19.10         9.07         7.13 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2620 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        3.25         0.13         4.87        11.28         8.02        18.64 
TCGA-19-5959 TCGA-26-1440 TCGA-26-5132 TCGA-27-1831 TCGA-27-1833 TCGA-27-2528 
        5.29         9.73         9.40        16.57        18.25        15.75 
TCGA-28-1747 TCGA-28-1752 TCGA-28-1757 TCGA-28-5214 TCGA-32-1970 TCGA-32-1978 
        2.53         8.45         0.13        14.20        15.35        15.85 
TCGA-32-1982 TCGA-32-1991 TCGA-32-5222 TCGA-41-3392 TCGA-41-3393 TCGA-76-4931 
        4.67        16.93         5.42         0.99         4.44         9.14 
TCGA-76-4932 TCGA-76-6282 TCGA-76-6656 TCGA-76-6664 
       47.93        17.06         4.83         7.76 

$subtype2
TCGA-02-0003 TCGA-02-0004 TCGA-02-0069 TCGA-02-2470 TCGA-06-0189 TCGA-06-0238 
        4.73        11.34        28.70        12.92        14.93        11.80 
TCGA-06-0644 TCGA-06-0650 TCGA-06-0882 TCGA-06-1084 TCGA-06-1802 TCGA-06-5410 
       12.33        23.57         5.42         7.43         7.86         3.52 
TCGA-06-5412 TCGA-06-6697 TCGA-08-0348 TCGA-08-0373 TCGA-08-0392 TCGA-15-1447 
        4.54        12.85        10.39         4.41         0.30        53.19 
TCGA-19-1790 TCGA-19-2625 TCGA-19-2631 TCGA-19-5947 TCGA-19-5953 TCGA-27-1832 
        5.03         4.08         7.00         6.64         4.73         9.86 
TCGA-27-2518 TCGA-28-1750 TCGA-28-1753 TCGA-32-1986 TCGA-32-4211 TCGA-41-6646 
       24.72         8.32         1.18        12.69        12.59         7.73 
TCGA-74-6573 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-6662 
        3.45         4.54        17.59         3.09         9.24 

$subtype3
TCGA-02-0011 TCGA-02-0014 TCGA-02-0068 TCGA-02-0116 TCGA-06-0125 TCGA-06-0128 
       20.71        82.55        26.43        48.95        47.31        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0156 TCGA-06-0171 TCGA-06-0875 TCGA-06-0879 
       32.48        10.52         5.39        13.02         9.17        22.98 
TCGA-06-0939 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1804 TCGA-06-1805 
       20.94         6.35         3.58        26.79        13.58         4.18 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2564 TCGA-06-2566 TCGA-06-2570 
        0.76         4.90         2.83         5.95         5.98         9.37 
TCGA-06-5411 TCGA-06-5416 TCGA-06-5417 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 
        8.35         6.71         5.10         2.73         6.12         4.54 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 
        3.91         7.76         5.36         1.45         7.36         8.28 
TCGA-06-6698 TCGA-06-6700 TCGA-06-6701 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 
        4.77         4.77         4.96        34.75       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0350 TCGA-08-0351 TCGA-08-0356 TCGA-08-0359 
        4.34        13.78         3.39        53.79        14.70         0.95 
TCGA-08-0360 TCGA-08-0380 TCGA-08-0385 TCGA-08-0389 TCGA-08-0390 TCGA-12-0691 
       11.57        10.85         1.02         3.19        10.59         6.08 
TCGA-12-0692 TCGA-12-1597 TCGA-12-1598 TCGA-12-1599 TCGA-12-3649 TCGA-12-3651 
        2.63        14.04         9.44        25.28        11.54        11.77 
TCGA-12-5301 TCGA-14-0813 TCGA-14-0862 TCGA-14-0871 TCGA-15-1449 TCGA-16-0846 
        2.01         1.35         2.89        28.90         5.49         3.91 
TCGA-16-1460 TCGA-19-0957 TCGA-19-0962 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 
        6.41        21.86         0.43         4.64        25.38         3.48 
TCGA-19-1788 TCGA-19-2619 TCGA-19-4068 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        3.65         9.67         4.47         7.96         1.78         6.51 
TCGA-19-5958 TCGA-19-5960 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-6173 
        5.39         5.42        31.33        14.86         5.49         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1834 TCGA-27-1836 TCGA-28-1746 TCGA-28-1760 
        2.30         4.80        33.14        30.05         0.20         4.70 
TCGA-28-5208 TCGA-32-1976 TCGA-32-1987 TCGA-32-4210 TCGA-41-2573 TCGA-41-2575 
       15.55         0.49        14.83         3.68         8.94         9.53 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
        6.02         0.20        11.54        17.52         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4929 TCGA-76-6192 TCGA-76-6193 TCGA-76-6285 
        8.22         7.46         3.65         3.29         2.70         8.32 
TCGA-76-6657 TCGA-76-6663 TCGA-81-5910 
        5.03         7.69         1.61 

subtype1 subtype2 subtype3 
     0.1      0.3      0.2 
subtype1 subtype2 subtype3 
   47.93    53.19   108.82 
subtype1 subtype2 subtype3 
   8.945    7.860    6.410 
[1] "0.1 - 47.9 (8.9)"  "0.3 - 53.2 (7.9)"  "0.2 - 108.8 (6.4)"
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [31] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [37] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [43] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [79] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [85] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [91] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[109] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[115] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[127] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[133] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[139] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[157] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[163] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[169] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[175] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[181] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[187] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[199] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[205] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [31] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [37] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [43] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [79] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [85] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [91] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[109] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[115] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[127] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[133] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[139] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[157] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[163] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[169] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[175] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[181] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[187] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[199] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[205] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [31] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [37] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [43] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [79] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [85] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [91] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[109] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[115] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[127] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[133] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[139] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[157] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[163] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[169] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[175] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[181] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[187] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[199] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[205] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
D8V2, continuous
D8V3, binary
          cls
clus        0  1
  subtype1 25 39
  subtype2 12 23
  subtype3 48 63
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   25   39
  subtype2   12   23
  subtype3   48   63
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       25       12       48
  MALE         39       23       63
D8V4, continuous
          vv
clus       TREATED PRIMARY GBM UNTREATED PRIMARY (DE NOVO) GBM
  subtype1                   1                              63
  subtype2                   1                              34
  subtype3                   1                             110
D8V5, multiclass
                                 clus
vv                                subtype1 subtype2 subtype3
  TREATED PRIMARY GBM                    1        1        1
  UNTREATED PRIMARY (DE NOVO) GBM       63       34      110
D8V6, binary
          cls
clus        0  1
  subtype1 50 14
  subtype2 26  9
  subtype3 79 32
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   50   14
  subtype2   26    9
  subtype3   79   32
     clus
vv    subtype1 subtype2 subtype3
  NO        50       26       79
  YES       14        9       32

Clustering(9) Variable = MRNASEQ_CNMF
D9V1, survival
          sevent
clus2       0  1
  subtype1 17 29
  subtype2 25 45
  subtype3 11 24
subtype1 subtype2 subtype3 
      46       70       35 
subtype1 subtype2 subtype3 
      29       45       24 
$subtype1
TCGA-02-0047 TCGA-02-2483 TCGA-06-0129 TCGA-06-0138 TCGA-06-0156 TCGA-06-0157 
       14.70        15.29        32.48        22.16         5.39         3.19 
TCGA-06-0174 TCGA-06-0178 TCGA-06-0238 TCGA-06-0646 TCGA-06-0686 TCGA-06-0745 
        2.20        53.98        11.80         4.47         9.37         5.36 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        1.08         0.76         4.90         0.43         9.37        11.21 
TCGA-06-5413 TCGA-06-5416 TCGA-06-5417 TCGA-06-5856 TCGA-06-5859 TCGA-12-0616 
        8.81         6.71         5.10         3.75         4.54        14.40 
TCGA-12-0618 TCGA-12-0821 TCGA-12-1597 TCGA-12-3650 TCGA-14-1825 TCGA-19-1390 
        1.61        10.62        14.04        10.95         7.63        25.38 
TCGA-19-2624 TCGA-19-2629 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-27-1830 
        0.16        16.47        14.86         5.49         8.84         4.80 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-28-1753 TCGA-28-5215 TCGA-28-5216 
       10.39        10.39        16.08         1.18         7.79        13.64 
TCGA-32-2634 TCGA-41-2571 TCGA-41-5651 TCGA-76-4929 
        8.88         0.85        11.54         3.65 

$subtype2
TCGA-02-0055 TCGA-02-2486 TCGA-06-0125 TCGA-06-0130 TCGA-06-0141 TCGA-06-0184 
        2.50        16.18        47.31        10.52         9.21        40.37 
TCGA-06-0187 TCGA-06-0190 TCGA-06-0210 TCGA-06-0644 TCGA-06-0645 TCGA-06-0649 
       26.33        10.29         4.96        12.33         3.22         2.04 
TCGA-06-0743 TCGA-06-0750 TCGA-06-0878 TCGA-06-2565 TCGA-06-2567 TCGA-06-5410 
       22.29         0.92         7.17         6.81         4.37         3.52 
TCGA-06-5412 TCGA-06-5414 TCGA-06-5418 TCGA-06-5858 TCGA-12-0619 TCGA-12-3652 
        4.54         8.98         2.73         6.12        10.39        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-14-0781 TCGA-14-0789 TCGA-14-0790 
       11.74        13.08         3.22         0.95        11.24        13.74 
TCGA-14-1034 TCGA-14-1823 TCGA-14-1829 TCGA-14-2554 TCGA-16-1045 TCGA-19-1787 
       15.95        17.82         7.13        17.49        29.00        12.66 
TCGA-19-2619 TCGA-19-2625 TCGA-19-4065 TCGA-26-5132 TCGA-26-5136 TCGA-26-5139 
        9.67         4.08         7.04         9.40         1.22         1.58 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1834 TCGA-27-1835 TCGA-27-2524 TCGA-27-2526 
       16.57         9.86        33.14        21.30         7.59         2.86 
TCGA-27-2528 TCGA-28-2499 TCGA-28-2509 TCGA-28-2513 TCGA-28-5204 TCGA-28-5208 
       15.75         3.09         4.77         7.30         3.91        15.55 
TCGA-28-5209 TCGA-28-5213 TCGA-28-5218 TCGA-28-5220 TCGA-32-2615 TCGA-32-2616 
        2.53         9.80         4.21        10.49        15.95         7.33 
TCGA-32-2632 TCGA-32-2638 TCGA-32-4213 TCGA-32-5222 TCGA-41-2572 TCGA-41-3915 
        8.84         7.36        11.70         5.42        13.35         6.02 
TCGA-76-4925 TCGA-76-4927 TCGA-76-4928 TCGA-76-4932 
        4.77        17.59         3.09        47.93 

$subtype3
TCGA-02-2485 TCGA-06-0132 TCGA-06-0158 TCGA-06-0168 TCGA-06-0211 TCGA-06-0219 
       15.42        18.74         5.46        19.04        11.84         0.33 
TCGA-06-0744 TCGA-06-0747 TCGA-06-0749 TCGA-06-0882 TCGA-06-1804 TCGA-06-2561 
       19.53         2.70         2.14         5.42        13.58         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-5411 TCGA-06-5415 TCGA-08-0386 
        2.83         8.52         5.95         8.35         8.55        15.72 
TCGA-14-0787 TCGA-14-0817 TCGA-15-0742 TCGA-16-0846 TCGA-19-2620 TCGA-19-5960 
        2.24         5.39         9.86         3.91         4.87         5.42 
TCGA-26-1442 TCGA-27-1837 TCGA-28-1747 TCGA-28-2514 TCGA-28-5207 TCGA-32-1970 
       31.33        14.04         2.53         5.26         9.04        15.35 
TCGA-32-1980 TCGA-32-1982 TCGA-41-4097 TCGA-76-4926 TCGA-76-4931 
        1.18         4.67         0.20         4.54         9.14 

subtype1 subtype2 subtype3 
    0.16     0.92     0.20 
subtype1 subtype2 subtype3 
   53.98    47.93    31.33 
subtype1 subtype2 subtype3 
   8.825    9.095    5.950 
[1] "0.2 - 54.0 (8.8)" "0.9 - 47.9 (9.1)" "0.2 - 31.3 (6.0)"
  [1] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [13] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [25] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [31] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [49] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [55] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [91] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[103] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[115] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[121] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[145] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[151] "subtype2"
  [1] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [13] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [25] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [31] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [49] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [55] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [91] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[103] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[115] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[121] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[145] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[151] "subtype2"
  [1] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [13] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [25] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [31] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [49] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [55] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [91] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[103] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[115] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[121] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[145] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[151] "subtype2"
D9V2, continuous
D9V3, binary
          cls
clus        0  1
  subtype1 14 32
  subtype2 31 39
  subtype3  8 27
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   14   32
  subtype2   31   39
  subtype3    8   27
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       14       31        8
  MALE         32       39       27
D9V4, continuous
          vv
clus       TREATED PRIMARY GBM UNTREATED PRIMARY (DE NOVO) GBM
  subtype1                   0                              46
  subtype2                   1                              69
  subtype3                   0                              35
D9V5, multiclass
                                 clus
vv                                subtype1 subtype2 subtype3
  TREATED PRIMARY GBM                    0        1        0
  UNTREATED PRIMARY (DE NOVO) GBM       46       69       35
D9V6, binary
          cls
clus        0  1
  subtype1 31 15
  subtype2 47 23
  subtype3 22 13
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   31   15
  subtype2   47   23
  subtype3   22   13
     clus
vv    subtype1 subtype2 subtype3
  NO        31       47       22
  YES       15       23       13

Clustering(10) Variable = MRNASEQ_CHIERARCHICAL
D10V1, survival
          sevent
clus2       0  1
  subtype1 25 44
  subtype2  7 15
  subtype3 21 39
subtype1 subtype2 subtype3 
      69       22       60 
subtype1 subtype2 subtype3 
      44       15       39 
$subtype1
TCGA-02-0055 TCGA-02-2485 TCGA-02-2486 TCGA-06-0130 TCGA-06-0141 TCGA-06-0156 
        2.50        15.42        16.18        10.52         9.21         5.39 
TCGA-06-0157 TCGA-06-0184 TCGA-06-0187 TCGA-06-0190 TCGA-06-0210 TCGA-06-0644 
        3.19        40.37        26.33        10.29         4.96        12.33 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0649 TCGA-06-0743 TCGA-06-0750 TCGA-06-0878 
        3.22         4.47         2.04        22.29         0.92         7.17 
TCGA-06-1804 TCGA-06-2567 TCGA-06-2569 TCGA-06-5408 TCGA-06-5410 TCGA-06-5412 
       13.58         4.37         0.43        11.21         3.52         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-08-0386 
        8.81         8.98         2.73         6.12         4.54        15.72 
TCGA-12-0619 TCGA-12-5295 TCGA-14-0781 TCGA-14-0789 TCGA-14-0790 TCGA-14-1034 
       10.39        13.08         0.95        11.24        13.74        15.95 
TCGA-14-1823 TCGA-14-1829 TCGA-14-2554 TCGA-16-1045 TCGA-19-1787 TCGA-19-2625 
       17.82         7.13        17.49        29.00        12.66         4.08 
TCGA-19-4065 TCGA-26-5132 TCGA-26-5136 TCGA-26-5139 TCGA-27-1830 TCGA-27-1831 
        7.04         9.40         1.22         1.58         4.80        16.57 
TCGA-27-1832 TCGA-27-1834 TCGA-27-2519 TCGA-27-2524 TCGA-27-2526 TCGA-28-1753 
        9.86        33.14        10.39         7.59         2.86         1.18 
TCGA-28-2499 TCGA-28-2509 TCGA-28-2513 TCGA-28-5213 TCGA-28-5218 TCGA-28-5220 
        3.09         4.77         7.30         9.80         4.21        10.49 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-4213 TCGA-41-3915 TCGA-76-4925 
       15.95         7.33         8.84        11.70         6.02         4.77 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
       17.59         3.09         3.65 

$subtype2
TCGA-06-0125 TCGA-06-0747 TCGA-06-2557 TCGA-06-2562 TCGA-06-2565 TCGA-12-3652 
       47.31         2.70         1.08         2.83         6.81        34.52 
TCGA-12-3653 TCGA-12-5299 TCGA-14-0787 TCGA-14-0817 TCGA-15-0742 TCGA-19-2619 
       11.74         3.22         2.24         5.39         9.86         9.67 
TCGA-27-1835 TCGA-27-2528 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-32-1982 
       21.30        15.75         3.91        15.55         2.53         4.67 
TCGA-32-2638 TCGA-32-5222 TCGA-41-2572 TCGA-76-4932 
        7.36         5.42        13.35        47.93 

$subtype3
TCGA-02-0047 TCGA-02-2483 TCGA-06-0129 TCGA-06-0132 TCGA-06-0138 TCGA-06-0158 
       14.70        15.29        32.48        18.74        22.16         5.46 
TCGA-06-0168 TCGA-06-0174 TCGA-06-0178 TCGA-06-0211 TCGA-06-0219 TCGA-06-0238 
       19.04         2.20        53.98        11.84         0.33        11.80 
TCGA-06-0686 TCGA-06-0744 TCGA-06-0745 TCGA-06-0749 TCGA-06-0882 TCGA-06-2558 
        9.37        19.53         5.36         2.14         5.42         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2563 TCGA-06-2564 TCGA-06-2570 TCGA-06-5411 
        4.90         9.27         8.52         5.95         9.37         8.35 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5417 TCGA-06-5856 TCGA-12-0616 TCGA-12-0618 
        8.55         6.71         5.10         3.75        14.40         1.61 
TCGA-12-0821 TCGA-12-1597 TCGA-12-3650 TCGA-14-1825 TCGA-16-0846 TCGA-19-1390 
       10.62        14.04        10.95         7.63         3.91        25.38 
TCGA-19-2620 TCGA-19-2624 TCGA-19-2629 TCGA-19-5960 TCGA-26-1442 TCGA-26-5133 
        4.87         0.16        16.47         5.42        31.33        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-27-1837 TCGA-27-2521 TCGA-27-2523 TCGA-28-1747 
        5.49         8.84        14.04        10.39        16.08         2.53 
TCGA-28-2514 TCGA-28-5207 TCGA-28-5215 TCGA-28-5216 TCGA-32-1970 TCGA-32-1980 
        5.26         9.04         7.79        13.64        15.35         1.18 
TCGA-32-2634 TCGA-41-2571 TCGA-41-4097 TCGA-41-5651 TCGA-76-4926 TCGA-76-4931 
        8.88         0.85         0.20        11.54         4.54         9.14 

subtype1 subtype2 subtype3 
    0.43     1.08     0.16 
subtype1 subtype2 subtype3 
   40.37    47.93    53.98 
subtype1 subtype2 subtype3 
   7.590    7.085    8.860 
[1] "0.4 - 40.4 (7.6)" "1.1 - 47.9 (7.1)" "0.2 - 54.0 (8.9)"
  [1] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [13] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [43] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
 [49] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [55] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [61] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [67] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [79] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [85] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [91] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[109] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[115] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[121] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[127] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[133] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[139] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[151] "subtype2"
  [1] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [13] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [43] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
 [49] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [55] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [61] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [67] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [79] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [85] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [91] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[109] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[115] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[121] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[127] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[133] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[139] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[151] "subtype2"
  [1] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [13] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [43] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
 [49] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [55] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [61] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [67] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [79] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [85] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [91] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[109] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[115] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[121] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[127] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[133] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[139] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[151] "subtype2"
D10V2, continuous
D10V3, binary
          cls
clus        0  1
  subtype1 29 40
  subtype2  9 13
  subtype3 15 45
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   29   40
  subtype2    9   13
  subtype3   15   45
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       29        9       15
  MALE         40       13       45
D10V4, continuous
          vv
clus       TREATED PRIMARY GBM UNTREATED PRIMARY (DE NOVO) GBM
  subtype1                   0                              69
  subtype2                   1                              21
  subtype3                   0                              60
D10V5, multiclass
                                 clus
vv                                subtype1 subtype2 subtype3
  TREATED PRIMARY GBM                    0        1        0
  UNTREATED PRIMARY (DE NOVO) GBM       69       21       60
D10V6, binary
          cls
clus        0  1
  subtype1 46 23
  subtype2 13  9
  subtype3 41 19
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   46   23
  subtype2   13    9
  subtype3   41   19
     clus
vv    subtype1 subtype2 subtype3
  NO        46       13       41
  YES       23        9       19
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
> q(save="no")
