
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Hotnet_preprocess/broadinstitute.org/cancer.genome.analysis/10162/25/Hotnet_preprocess.R")
> result <- main("-l/xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/HNSC-TP/3471868/all_lesions.conf_99.txt", "-a/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/HNSC-TP/2863005/HNSC-TP.per_gene.mutation_counts.txt", "-oHNSC-TP", "-b/xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/HNSC-TP/3471868/amp_genes.conf_99.txt", "-c/xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/HNSC-TP/3471868/del_genes.conf_99.txt")
> q(save="no")
