
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_TopgenesforCluster.36.4074/Topgenes_v1.R")
> result <- main("-s/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_TopgenesforCluster.36.4074/", "-m/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MethylationPreprocess/KICH-TP/3527715/KICH-TP.meth.by_max_stddev.data.txt", "-u13852", "-ooutputprefix")
Cluster size 13852 broken into 5955 7897 
Cluster size 5955 broken into 2637 3318 
Cluster size 2637 broken into 1113 1524 
Done cluster 1113 
Cluster size 1524 broken into 955 569 
Done cluster 955 
Done cluster 569 
Done cluster 1524 
Done cluster 2637 
Cluster size 3318 broken into 1805 1513 
Cluster size 1805 broken into 740 1065 
Done cluster 740 
Done cluster 1065 
Done cluster 1805 
Cluster size 1513 broken into 647 866 
Done cluster 647 
Done cluster 866 
Done cluster 1513 
Done cluster 3318 
Done cluster 5955 
Cluster size 7897 broken into 3643 4254 
Cluster size 3643 broken into 2071 1572 
Cluster size 2071 broken into 895 1176 
Done cluster 895 
Done cluster 1176 
Done cluster 2071 
Cluster size 1572 broken into 851 721 
Done cluster 851 
Done cluster 721 
Done cluster 1572 
Done cluster 3643 
Cluster size 4254 broken into 1620 2634 
Cluster size 1620 broken into 938 682 
Done cluster 938 
Done cluster 682 
Done cluster 1620 
Cluster size 2634 broken into 1348 1286 
Done cluster 1348 
Done cluster 1286 
Done cluster 2634 
Done cluster 4254 
Done cluster 7897 
> q(save="no")
