
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.85.4149/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.85.4149/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/KIRC-TP/3536964/KIRC-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/KIRC-TP/3351227/KIRC-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=502, in cluster file=513, common to both=502
[1]  12 502
[1] "MRNA_CNMF"
[1] 3
 1  2  3 
34 24 14 
 1  2  3 
34 24 14 
[1] "MRNA_CHIERARCHICAL"
[1] 3
 1  2  3 
15 33 24 
 1  2  3 
15 33 24 
[1] "CN_CNMF"
[1] 3
  1   2   3 
161 210 122 
  1   2   3 
161 210 122 
[1] "METHLYATION_CNMF"
[1] 3
  1   2   3 
 96 118  69 
  1   2   3 
 96 118  69 
[1] "RPPA_CNMF"
[1] 3
  1   2   3   4   5   6 
101  90  86  76  44  57 
  1   2   3   4   5   6 
101  90  86  76  44  57 
[1] "RPPA_CHIERARCHICAL"
[1] 3
  1   2   3 
189 153 112 
  1   2   3 
189 153 112 
[1] "MRNASEQ_CNMF"
[1] 3
  1   2   3 
199 180 101 
  1   2   3 
199 180 101 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 73 215 192 
  1   2   3 
 73 215 192 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
117 192 172 
  1   2   3 
117 192 172 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 37 162 282 
  1   2   3 
 37 162 282 
[1] "MIRSEQ_MATURE_CNMF"
[1] 3
 1  2  3 
51 90 76 
 1  2  3 
51 90 76 
[1] "MIRSEQ_MATURE_CHIERARCHICAL"
[1] 3
 1  2  3 
59 93 65 
 1  2  3 
59 93 65 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "RADIATIONS.RADIATION.REGIMENINDICATION"
[13] "NUMBERPACKYEARSSMOKED"                 
[14] "YEAROFTOBACCOSMOKINGONSET"             
[15] "DISTANT.METASTASIS"                    
[16] "LYMPH.NODE.METASTASIS"                 
[17] "TUMOR.STAGECODE"                       
[18] "NEOPLASM.DISEASESTAGE"                 
[19] "BATCHNUMBER"                           

Input Data has 19 rows and 502 columns.

[1] "Batch" "19"   
[1] "Last Follow UP"
TCGA-A3-3306 TCGA-A3-3307 TCGA-A3-3308 TCGA-A3-3311 TCGA-A3-3313 TCGA-A3-3316 
        1120         1436           16         1190          735         1493 
TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3323 TCGA-A3-3324 
        1491         1130         1508         1477         1105         1186 
TCGA-A3-3325 TCGA-A3-3326 TCGA-A3-3328 TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3335 
         751         1137          785          706         1485          664 
TCGA-A3-3336 TCGA-A3-3343 TCGA-A3-3346 TCGA-A3-3347 TCGA-A3-3349 TCGA-A3-3351 
        1043          944          137         1097         1385          910 
TCGA-A3-3352 TCGA-A3-3357 TCGA-A3-3358 TCGA-A3-3359 TCGA-A3-3362 TCGA-A3-3363 
         561         1425         1307         1286         1559          319 
TCGA-A3-3365 TCGA-A3-3367 TCGA-A3-3370 TCGA-A3-3372 TCGA-A3-3373 TCGA-A3-3374 
         872         1054          776          735          334         1313 
TCGA-A3-3376 TCGA-A3-3378 TCGA-A3-3380 TCGA-A3-3382 TCGA-A3-3383 TCGA-A3-3385 
        1070          630          567          574          861          726 
TCGA-A3-3387 TCGA-AK-3425 TCGA-AK-3426 TCGA-AK-3427 TCGA-AK-3428 TCGA-AK-3429 
         616         3343          884         2566         2223         2017 
TCGA-AK-3430 TCGA-AK-3431 TCGA-AK-3433 TCGA-AK-3434 TCGA-AK-3436 TCGA-AK-3440 
         480         1853         2192         2086         2043         1744 
TCGA-AK-3443 TCGA-AK-3444 TCGA-AK-3445 TCGA-AK-3447 TCGA-AK-3450 TCGA-AK-3451 
        1423         1471         1279         1217         1499         1481 
TCGA-AK-3453 TCGA-AK-3454 TCGA-AK-3455 TCGA-AK-3456 TCGA-AK-3458 TCGA-AK-3460 
        1190          873          683           46         1168          951 
TCGA-AK-3461 TCGA-AK-3465 TCGA-AS-3777 TCGA-AS-3778 TCGA-B0-4688 TCGA-B0-4690 
         853          369           40           NA           98           43 
TCGA-B0-4691 TCGA-B0-4693 TCGA-B0-4694 TCGA-B0-4696 TCGA-B0-4697 TCGA-B0-4698 
         139           77          106          866          577           42 
TCGA-B0-4699 TCGA-B0-4700 TCGA-B0-4701 TCGA-B0-4703 TCGA-B0-4706 TCGA-B0-4707 
         109           NA          208          182           26          599 
TCGA-B0-4710 TCGA-B0-4712 TCGA-B0-4713 TCGA-B0-4714 TCGA-B0-4718 TCGA-B0-4810 
           5         1337          201            3          214          266 
TCGA-B0-4811 TCGA-B0-4813 TCGA-B0-4814 TCGA-B0-4815 TCGA-B0-4816 TCGA-B0-4817 
        1196           18           47         1491         1081          848 
TCGA-B0-4818 TCGA-B0-4819 TCGA-B0-4821 TCGA-B0-4822 TCGA-B0-4823 TCGA-B0-4824 
         426          183         1229         1111          454         1463 
TCGA-B0-4827 TCGA-B0-4828 TCGA-B0-4833 TCGA-B0-4834 TCGA-B0-4836 TCGA-B0-4837 
         884          307         2385         2090         1238         1292 
TCGA-B0-4838 TCGA-B0-4839 TCGA-B0-4841 TCGA-B0-4842 TCGA-B0-4843 TCGA-B0-4844 
         728         1638          139         1636          320          313 
TCGA-B0-4845 TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4848 TCGA-B0-4849 TCGA-B0-4852 
        1985         1199          792          882           69         1079 
TCGA-B0-4945 TCGA-B0-5075 TCGA-B0-5077 TCGA-B0-5080 TCGA-B0-5081 TCGA-B0-5083 
        2145          608         1291          222          233          465 
TCGA-B0-5084 TCGA-B0-5085 TCGA-B0-5088 TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5095 
         221          769          433          459          333          245 
TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5098 TCGA-B0-5099 TCGA-B0-5100 TCGA-B0-5102 
          67          151         1584          485         1913         2763 
TCGA-B0-5104 TCGA-B0-5106 TCGA-B0-5107 TCGA-B0-5108 TCGA-B0-5109 TCGA-B0-5110 
        2751         1597          927          162          586          560 
TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5116 TCGA-B0-5117 TCGA-B0-5119 TCGA-B0-5120 
          22           90          103           NA           48           55 
TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5400 TCGA-B0-5402 TCGA-B0-5690 TCGA-B0-5691 
         186          190          677           10         2180         2781 
TCGA-B0-5692 TCGA-B0-5693 TCGA-B0-5694 TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5697 
        1487         1852          469         1042          944         1135 
TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5700 TCGA-B0-5701 TCGA-B0-5702 TCGA-B0-5703 
        2181         2425          375         1276         1158          262 
TCGA-B0-5705 TCGA-B0-5706 TCGA-B0-5707 TCGA-B0-5709 TCGA-B0-5710 TCGA-B0-5711 
        3335         2414         2592         2357          957         2553 
TCGA-B0-5712 TCGA-B0-5713 TCGA-B0-5812 TCGA-B2-3923 TCGA-B2-3924 TCGA-B2-4098 
        2438         1864         2324          178          194           50 
TCGA-B2-4099 TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5633 TCGA-B2-5635 TCGA-B2-5636 
         110           90           15          214          315          258 
TCGA-B2-5639 TCGA-B2-5641 TCGA-B4-5377 TCGA-B4-5378 TCGA-B4-5832 TCGA-B4-5834 
         191          168          291          175            7           38 
TCGA-B4-5835 TCGA-B4-5836 TCGA-B4-5838 TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4143 
          16          141          166           11            7          709 
TCGA-B8-4146 TCGA-B8-4148 TCGA-B8-4151 TCGA-B8-4153 TCGA-B8-4154 TCGA-B8-4619 
         511          379          279          404          255           19 
TCGA-B8-4620 TCGA-B8-4621 TCGA-B8-4622 TCGA-B8-5158 TCGA-B8-5159 TCGA-B8-5162 
         226          215          181           90          133           22 
TCGA-B8-5163 TCGA-B8-5164 TCGA-B8-5165 TCGA-B8-5545 TCGA-B8-5546 TCGA-B8-5549 
           4           23            8          248           14          194 
TCGA-B8-5550 TCGA-B8-5551 TCGA-B8-5552 TCGA-B8-5553 TCGA-BP-4158 TCGA-BP-4159 
         197           15          219           14         3377         2600 
TCGA-BP-4160 TCGA-BP-4161 TCGA-BP-4162 TCGA-BP-4163 TCGA-BP-4164 TCGA-BP-4165 
        2881         2746         3074         2839          992         2946 
TCGA-BP-4166 TCGA-BP-4167 TCGA-BP-4169 TCGA-BP-4170 TCGA-BP-4173 TCGA-BP-4174 
          13         2718          701         2343         1893         1879 
TCGA-BP-4176 TCGA-BP-4177 TCGA-BP-4325 TCGA-BP-4326 TCGA-BP-4327 TCGA-BP-4329 
        1955         1670         2964         1624          108          845 
TCGA-BP-4330 TCGA-BP-4331 TCGA-BP-4332 TCGA-BP-4334 TCGA-BP-4335 TCGA-BP-4337 
        1888         2453         1133          645          460            2 
TCGA-BP-4338 TCGA-BP-4340 TCGA-BP-4341 TCGA-BP-4342 TCGA-BP-4343 TCGA-BP-4344 
        2746          562         1589         2256         1912         1666 
TCGA-BP-4345 TCGA-BP-4346 TCGA-BP-4347 TCGA-BP-4349 TCGA-BP-4351 TCGA-BP-4352 
        1516         1493         1367          372          969          344 
TCGA-BP-4353 TCGA-BP-4354 TCGA-BP-4355 TCGA-BP-4756 TCGA-BP-4758 TCGA-BP-4759 
         375         1034          953          374         2208         2324 
TCGA-BP-4760 TCGA-BP-4761 TCGA-BP-4762 TCGA-BP-4763 TCGA-BP-4765 TCGA-BP-4766 
        2249          182         1343         1270         2184         1461 
TCGA-BP-4768 TCGA-BP-4769 TCGA-BP-4770 TCGA-BP-4771 TCGA-BP-4774 TCGA-BP-4775 
         400         1876          329          161         1884         1842 
TCGA-BP-4776 TCGA-BP-4777 TCGA-BP-4781 TCGA-BP-4782 TCGA-BP-4784 TCGA-BP-4787 
         410         1731         2080          354         1854          479 
TCGA-BP-4789 TCGA-BP-4790 TCGA-BP-4795 TCGA-BP-4797 TCGA-BP-4798 TCGA-BP-4799 
        1489         1111          620         1107          334         1133 
TCGA-BP-4801 TCGA-BP-4803 TCGA-BP-4804 TCGA-BP-4807 TCGA-BP-4959 TCGA-BP-4960 
        1124          203         1459          211         2660         2172 
TCGA-BP-4961 TCGA-BP-4962 TCGA-BP-4963 TCGA-BP-4964 TCGA-BP-4965 TCGA-BP-4967 
        1935         1785         1834         1862         1871          204 
TCGA-BP-4968 TCGA-BP-4969 TCGA-BP-4970 TCGA-BP-4971 TCGA-BP-4972 TCGA-BP-4973 
        1745         1794          432         1487         1501         1384 
TCGA-BP-4974 TCGA-BP-4975 TCGA-BP-4976 TCGA-BP-4977 TCGA-BP-4981 TCGA-BP-4982 
         220         1433         1632          454         1097         1013 
TCGA-BP-4983 TCGA-BP-4985 TCGA-BP-4986 TCGA-BP-4987 TCGA-BP-4988 TCGA-BP-4989 
        1412          951          785         1124          827          117 
TCGA-BP-4991 TCGA-BP-4992 TCGA-BP-4993 TCGA-BP-4994 TCGA-BP-4995 TCGA-BP-4998 
        1044          500          176         1307         1371          931 
TCGA-BP-4999 TCGA-BP-5000 TCGA-BP-5001 TCGA-BP-5004 TCGA-BP-5006 TCGA-BP-5007 
        1266          563         1177         1126          840         1140 
TCGA-BP-5008 TCGA-BP-5009 TCGA-BP-5010 TCGA-BP-5168 TCGA-BP-5169 TCGA-BP-5170 
        1071         1092          877         1463          192         2411 
TCGA-BP-5173 TCGA-BP-5174 TCGA-BP-5175 TCGA-BP-5176 TCGA-BP-5177 TCGA-BP-5178 
          54         2257          932         1590          293         1912 
TCGA-BP-5180 TCGA-BP-5181 TCGA-BP-5182 TCGA-BP-5183 TCGA-BP-5184 TCGA-BP-5185 
        1892         1495         1165         1102         1133         1132 
TCGA-BP-5186 TCGA-BP-5187 TCGA-BP-5189 TCGA-BP-5190 TCGA-BP-5191 TCGA-BP-5192 
         693          406          822         1010          966          714 
TCGA-BP-5194 TCGA-BP-5195 TCGA-BP-5196 TCGA-BP-5198 TCGA-BP-5199 TCGA-BP-5200 
         408          748         1018          603         1354          881 
TCGA-BP-5201 TCGA-BP-5202 TCGA-CJ-4634 TCGA-CJ-4635 TCGA-CJ-4636 TCGA-CJ-4637 
         951           29         1820         1416         1924         2227 
TCGA-CJ-4638 TCGA-CJ-4639 TCGA-CJ-4640 TCGA-CJ-4641 TCGA-CJ-4642 TCGA-CJ-4643 
         431         2308         1998         1661         1617         1792 
TCGA-CJ-4644 TCGA-CJ-4868 TCGA-CJ-4869 TCGA-CJ-4870 TCGA-CJ-4871 TCGA-CJ-4872 
         336          645         2554         1497         2422         1435 
TCGA-CJ-4873 TCGA-CJ-4874 TCGA-CJ-4875 TCGA-CJ-4876 TCGA-CJ-4878 TCGA-CJ-4881 
        2258         2283         2353         1955         2186         2013 
TCGA-CJ-4882 TCGA-CJ-4884 TCGA-CJ-4885 TCGA-CJ-4886 TCGA-CJ-4887 TCGA-CJ-4888 
        1883          993         2125         1951          649         1566 
TCGA-CJ-4889 TCGA-CJ-4890 TCGA-CJ-4891 TCGA-CJ-4892 TCGA-CJ-4893 TCGA-CJ-4894 
        1945         2085          818         1520          749          841 
TCGA-CJ-4895 TCGA-CJ-4897 TCGA-CJ-4899 TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-4902 
        1200         1808         1527         1274         1450         1519 
TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4905 TCGA-CJ-4907 TCGA-CJ-4908 TCGA-CJ-4912 
        1559         1792         1495         1498         1530         1656 
TCGA-CJ-4913 TCGA-CJ-4916 TCGA-CJ-4918 TCGA-CJ-4920 TCGA-CJ-4923 TCGA-CJ-5671 
        1173         1372           92          139          572         1942 
TCGA-CJ-5672 TCGA-CJ-5675 TCGA-CJ-5676 TCGA-CJ-5677 TCGA-CJ-5678 TCGA-CJ-5679 
        2190         2429         2575          782          573          678 
TCGA-CJ-5680 TCGA-CJ-5681 TCGA-CJ-5682 TCGA-CJ-5683 TCGA-CJ-5684 TCGA-CJ-5686 
         768          551         1883         1889         2230         2038 
TCGA-CJ-5689 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6030 TCGA-CJ-6031 TCGA-CJ-6032 
           6         1855           NA           NA         1905         2548 
TCGA-CJ-6033 TCGA-CW-5580 TCGA-CW-5581 TCGA-CW-5583 TCGA-CW-5584 TCGA-CW-5585 
          NA         1964         2799         2489          164         2609 
TCGA-CW-5587 TCGA-CW-5588 TCGA-CW-5589 TCGA-CW-5590 TCGA-CW-5591 TCGA-CW-6087 
        2226         2016         2377         1075         2270           41 
TCGA-CW-6088 TCGA-CW-6090 TCGA-CW-6093 TCGA-CW-6096 TCGA-CW-6097 TCGA-CZ-4853 
        2311         2308         2430         2127          570          774 
TCGA-CZ-4854 TCGA-CZ-4856 TCGA-CZ-4857 TCGA-CZ-4858 TCGA-CZ-4859 TCGA-CZ-4860 
        1404           18         1432         1943         1787          205 
TCGA-CZ-4861 TCGA-CZ-4862 TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-4865 TCGA-CZ-4866 
         445         1843         1690         2830          165         1768 
TCGA-CZ-5451 TCGA-CZ-5452 TCGA-CZ-5453 TCGA-CZ-5454 TCGA-CZ-5455 TCGA-CZ-5456 
        1668         1556           25          722          561         1558 
TCGA-CZ-5457 TCGA-CZ-5458 TCGA-CZ-5459 TCGA-CZ-5460 TCGA-CZ-5461 TCGA-CZ-5462 
        1547         1558         1515         1430          330          311 
TCGA-CZ-5463 TCGA-CZ-5464 TCGA-CZ-5465 TCGA-CZ-5466 TCGA-CZ-5467 TCGA-CZ-5468 
         662         1492         1377          685           73           59 
TCGA-CZ-5469 TCGA-CZ-5470 TCGA-CZ-5982 TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5986 
         945           NA         2042         1491         1629          373 
TCGA-CZ-5987 TCGA-CZ-5988 TCGA-CZ-5989 TCGA-DV-5565 TCGA-DV-5566 TCGA-DV-5567 
         435          693         1599         1329         1398          909 
TCGA-DV-5568 TCGA-DV-5569 TCGA-DV-5573 TCGA-DV-5574 TCGA-DV-5575 TCGA-DV-5576 
         370          355         1130          723         1005          727 
TCGA-EU-5904 TCGA-EU-5905 TCGA-EU-5906 TCGA-EU-5907 
         550          118          206          126 
Variable 1:'AGE':	nDistinctValues=59,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=153,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=448,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=13,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=422,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 13:'NUMBERPACKYEARSSMOKED':	nDistinctValues=2,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 14:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'DISTANT.METASTASIS':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'LYMPH.NODE.METASTASIS':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'TUMOR.STAGECODE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'NEOPLASM.DISEASESTAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'BATCH.NUMBER':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                         "GENDER"                     
[3] "KARNOFSKY.PERFORMANCE.SCORE" "DISTANT.METASTASIS"         
[5] "LYMPH.NODE.METASTASIS"       "TUMOR.STAGECODE"            
[7] "NEOPLASM.DISEASESTAGE"      
[1] "TUMOR.?STAGE" "6"           
[1] "stage2"
vv
 T1 T1A T1B  T2 T2A T2B  T3 T3A T3B T3C  T4 
 22 125 102  55   5   4   4 120  52   2  11 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 502 columns, 1 survival variables, and 7 non-survival variables.
AGE, nv=59, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=5, binary=FALSE, numeric=TRUE
DISTANT.METASTASIS, nv=2, binary=FALSE, numeric=FALSE
LYMPH.NODE.METASTASIS, nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGECODE, nv=0, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 29  4
  subtype2 16  8
  subtype3 13  1
subtype1 subtype2 subtype3 
      33       24       14 
subtype1 subtype2 subtype3 
       4        8        1 
$subtype1
TCGA-A3-3306 TCGA-A3-3307 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3325 
       36.82        47.21        49.58        48.56        38.99        24.69 
TCGA-A3-3326 TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3343 TCGA-A3-3349 TCGA-A3-3351 
       37.38        23.21        48.82        31.04        45.53        29.92 
TCGA-A3-3352 TCGA-A3-3359 TCGA-A3-3362 TCGA-A3-3365 TCGA-A3-3372 TCGA-A3-3380 
       18.44        42.28        51.25        28.67        24.16        18.64 
TCGA-A3-3383 TCGA-AK-3444 TCGA-AK-3455 TCGA-B2-3924 TCGA-B2-4099 TCGA-B2-4102 
       28.31        48.36        22.45         6.38         3.62         0.49 
TCGA-B8-4151 TCGA-B8-4154 TCGA-B8-4619 TCGA-BP-4162 TCGA-BP-4164 TCGA-CJ-4634 
        9.17         8.38         0.62       101.06        32.61        59.84 
TCGA-CJ-4639 TCGA-CJ-4643 TCGA-CJ-4644 
       75.88        58.92        11.05 

$subtype2
TCGA-A3-3308 TCGA-A3-3311 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3323 
        0.53        39.12        49.08        49.02        37.15        36.33 
TCGA-A3-3335 TCGA-A3-3346 TCGA-A3-3347 TCGA-A3-3374 TCGA-A3-3378 TCGA-A3-3382 
       21.83         4.50        36.07        43.17        20.71        18.87 
TCGA-AK-3426 TCGA-B2-4098 TCGA-B8-4143 TCGA-B8-4620 TCGA-BP-4161 TCGA-BP-4163 
       29.06         1.64        23.31         7.43        90.28        93.34 
TCGA-BP-4167 TCGA-CJ-4636 TCGA-CJ-4637 TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4641 
       89.36        63.25        73.22        14.17        65.69        54.61 

$subtype3
TCGA-A3-3313 TCGA-A3-3328 TCGA-A3-3336 TCGA-A3-3363 TCGA-AK-3427 TCGA-AK-3440 
       24.16        25.81        34.29        10.49        84.36        57.34 
TCGA-AK-3443 TCGA-AK-3447 TCGA-AK-3453 TCGA-AK-3456 TCGA-AK-3465 TCGA-AS-3777 
       46.78        40.01        39.12         1.51        12.13         1.32 
TCGA-B2-3923 TCGA-B8-4148 
        5.85        12.46 

subtype1 subtype2 subtype3 
    0.49     0.53     1.32 
subtype1 subtype2 subtype3 
  101.06    93.34    84.36 
subtype1 subtype2 subtype3 
  31.040   36.740   24.985 
[1] "0.5 - 101.1 (31.0)" "0.5 - 93.3 (36.7)"  "1.3 - 84.4 (25.0)" 
 [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[19] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[25] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[31] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[37] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[55] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[67] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[19] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[25] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[31] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[37] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[55] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[67] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[19] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[25] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[31] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[37] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[55] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[67] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
D1V2, continuous
D1V3, binary
          cls
clus        0  1
  subtype1 15 19
  subtype2 10 14
  subtype3  4 10
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15   19
  subtype2   10   14
  subtype3    4   10
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       15       10        4
  MALE         19       14       10
D1V4, continuous
[1] "Remove cluster labels:" "subtype2"              
clus
subtype2 
       1 
character(0)
D1V5, binary
          cls
clus        0  1
  subtype1 33  1
  subtype2 20  4
  subtype3 14  0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   33    1
  subtype2   20    4
  subtype3   14    0
    clus
vv   subtype1 subtype2 subtype3
  M0       33       20       14
  M1        1        4        0
          vv
clus       N0 N1 NX
  subtype1 18  0 16
  subtype2 10  3 11
  subtype3  7  0  7
D1V6, multiclass
D1V7, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      23        4         6        1
  subtype2       9        3         8        4
  subtype3       8        6         0        0
D1V8, multiclass

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2       0  1
  subtype1 13  2
  subtype2 28  4
  subtype3 17  7
subtype1 subtype2 subtype3 
      15       32       24 
subtype1 subtype2 subtype3 
       2        4        7 
$subtype1
TCGA-A3-3313 TCGA-A3-3328 TCGA-A3-3336 TCGA-A3-3363 TCGA-AK-3427 TCGA-AK-3440 
       24.16        25.81        34.29        10.49        84.36        57.34 
TCGA-AK-3443 TCGA-AK-3447 TCGA-AK-3453 TCGA-AK-3456 TCGA-AK-3465 TCGA-AS-3777 
       46.78        40.01        39.12         1.51        12.13         1.32 
TCGA-B2-3923 TCGA-B2-4098 TCGA-B8-4148 
        5.85         1.64        12.46 

$subtype2
TCGA-A3-3307 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3325 TCGA-A3-3326 
       47.21        49.58        48.56        38.99        24.69        37.38 
TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3343 TCGA-A3-3349 TCGA-A3-3351 TCGA-A3-3352 
       23.21        48.82        31.04        45.53        29.92        18.44 
TCGA-A3-3359 TCGA-A3-3362 TCGA-A3-3365 TCGA-A3-3372 TCGA-A3-3380 TCGA-A3-3383 
       42.28        51.25        28.67        24.16        18.64        28.31 
TCGA-AK-3444 TCGA-AK-3455 TCGA-B2-3924 TCGA-B2-4099 TCGA-B2-4102 TCGA-B8-4151 
       48.36        22.45         6.38         3.62         0.49         9.17 
TCGA-B8-4154 TCGA-B8-4619 TCGA-BP-4162 TCGA-BP-4164 TCGA-CJ-4634 TCGA-CJ-4639 
        8.38         0.62       101.06        32.61        59.84        75.88 
TCGA-CJ-4643 TCGA-CJ-4644 
       58.92        11.05 

$subtype3
TCGA-A3-3306 TCGA-A3-3308 TCGA-A3-3311 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3319 
       36.82         0.53        39.12        49.08        49.02        37.15 
TCGA-A3-3323 TCGA-A3-3335 TCGA-A3-3346 TCGA-A3-3347 TCGA-A3-3374 TCGA-A3-3378 
       36.33        21.83         4.50        36.07        43.17        20.71 
TCGA-A3-3382 TCGA-AK-3426 TCGA-B8-4143 TCGA-B8-4620 TCGA-BP-4161 TCGA-BP-4163 
       18.87        29.06        23.31         7.43        90.28        93.34 
TCGA-BP-4167 TCGA-CJ-4636 TCGA-CJ-4637 TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4641 
       89.36        63.25        73.22        14.17        65.69        54.61 

subtype1 subtype2 subtype3 
    1.32     0.49     0.53 
subtype1 subtype2 subtype3 
   84.36   101.06    93.34 
subtype1 subtype2 subtype3 
  24.160   30.480   36.985 
[1] "1.3 - 84.4 (24.2)"  "0.5 - 101.1 (30.5)" "0.5 - 93.3 (37.0)" 
 [1] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[19] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[31] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[49] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[55] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[61] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [1] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[19] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[31] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[49] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[55] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[61] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [1] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[19] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[31] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[49] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[55] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[61] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
D2V2, continuous
D2V3, binary
          cls
clus        0  1
  subtype1  5 10
  subtype2 15 18
  subtype3  9 15
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   10
  subtype2   15   18
  subtype3    9   15
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        5       15        9
  MALE         10       18       15
D2V4, continuous
[1] "Remove cluster labels:" "subtype3"              
clus
subtype3 
       1 
character(0)
D2V5, binary
          cls
clus        0  1
  subtype1 15  0
  subtype2 32  1
  subtype3 20  4
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15    0
  subtype2   32    1
  subtype3   20    4
    clus
vv   subtype1 subtype2 subtype3
  M0       15       32       20
  M1        0        1        4
          vv
clus       N0 N1 NX
  subtype1  7  0  8
  subtype2 17  0 16
  subtype3 11  3 10
D2V6, multiclass
D2V7, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1       9        6         0        0
  subtype2      22        4         6        1
  subtype3       9        3         8        4
D2V8, multiclass

Clustering(3) Variable = CN_CNMF
D3V1, survival
          sevent
clus2        0   1
  subtype1  92  69
  subtype2 161  48
  subtype3  79  41
subtype1 subtype2 subtype3 
     161      209      120 
subtype1 subtype2 subtype3 
      69       48       41 
$subtype1
TCGA-A3-3306 TCGA-A3-3311 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3320 
       36.82        39.12        49.08        49.02        37.15        49.58 
TCGA-A3-3325 TCGA-A3-3335 TCGA-A3-3336 TCGA-A3-3346 TCGA-A3-3347 TCGA-A3-3352 
       24.69        21.83        34.29         4.50        36.07        18.44 
TCGA-A3-3372 TCGA-A3-3382 TCGA-AK-3425 TCGA-AK-3426 TCGA-AK-3430 TCGA-AK-3434 
       24.16        18.87       109.91        29.06        15.78        68.58 
TCGA-AK-3436 TCGA-AK-3445 TCGA-AK-3450 TCGA-AK-3454 TCGA-AK-3458 TCGA-AK-3461 
       67.17        42.05        49.28        28.70        38.40        28.04 
TCGA-B0-4690 TCGA-B0-4691 TCGA-B0-4694 TCGA-B0-4696 TCGA-B0-4707 TCGA-B0-4712 
        1.41         4.57         3.48        28.47        19.69        43.96 
TCGA-B0-4713 TCGA-B0-4813 TCGA-B0-4815 TCGA-B0-4821 TCGA-B0-4828 TCGA-B0-4836 
        6.61         0.59        49.02        40.41        10.09        40.70 
TCGA-B0-4838 TCGA-B0-4842 TCGA-B0-4845 TCGA-B0-4848 TCGA-B0-5084 TCGA-B0-5092 
       23.93        53.79        65.26        29.00         7.27        15.09 
TCGA-B0-5094 TCGA-B0-5095 TCGA-B0-5096 TCGA-B0-5098 TCGA-B0-5102 TCGA-B0-5109 
       10.95         8.05         2.20        52.08        90.84        19.27 
TCGA-B0-5113 TCGA-B0-5116 TCGA-B0-5402 TCGA-B0-5694 TCGA-B0-5701 TCGA-B0-5703 
        0.72         3.39         0.33        15.42        41.95         8.61 
TCGA-B2-5633 TCGA-B2-5641 TCGA-B4-5832 TCGA-B4-5835 TCGA-B4-5843 TCGA-B8-4143 
        7.04         5.52         0.23         0.53         0.36        23.31 
TCGA-B8-4620 TCGA-B8-5158 TCGA-B8-5163 TCGA-B8-5549 TCGA-B8-5551 TCGA-BP-4161 
        7.43         2.96         0.13         6.38         0.49        90.28 
TCGA-BP-4164 TCGA-BP-4174 TCGA-BP-4176 TCGA-BP-4325 TCGA-BP-4331 TCGA-BP-4338 
       32.61        61.78        64.27        97.45        80.65        90.28 
TCGA-BP-4342 TCGA-BP-4343 TCGA-BP-4351 TCGA-BP-4352 TCGA-BP-4353 TCGA-BP-4756 
       74.17        62.86        31.86        11.31        12.33        12.30 
TCGA-BP-4761 TCGA-BP-4763 TCGA-BP-4766 TCGA-BP-4768 TCGA-BP-4771 TCGA-BP-4781 
        5.98        41.75        48.03        13.15         5.29        68.38 
TCGA-BP-4787 TCGA-BP-4797 TCGA-BP-4798 TCGA-BP-4803 TCGA-BP-4959 TCGA-BP-4960 
       15.75        36.39        10.98         6.67        87.45        71.41 
TCGA-BP-4962 TCGA-BP-4963 TCGA-BP-4971 TCGA-BP-4985 TCGA-BP-4986 TCGA-BP-4989 
       58.68        60.30        48.89        31.27        25.81         3.85 
TCGA-BP-4992 TCGA-BP-5000 TCGA-BP-5010 TCGA-BP-5169 TCGA-BP-5173 TCGA-BP-5175 
       16.44        18.51        28.83         6.31         1.78        30.64 
TCGA-BP-5178 TCGA-BP-5180 TCGA-BP-5183 TCGA-BP-5185 TCGA-BP-5189 TCGA-BP-5191 
       62.86        62.20        36.23        37.22        27.02        31.76 
TCGA-BP-5198 TCGA-BP-5201 TCGA-CJ-4635 TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4644 
       19.82        31.27        46.55        14.17        65.69        11.05 
TCGA-CJ-4871 TCGA-CJ-4873 TCGA-CJ-4876 TCGA-CJ-4881 TCGA-CJ-4893 TCGA-CJ-4895 
       79.63        74.24        64.27        66.18        24.62        39.45 
TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-4903 TCGA-CJ-4912 TCGA-CJ-5675 TCGA-CJ-5677 
       41.88        47.67        51.25        54.44        79.86        25.71 
TCGA-CJ-5678 TCGA-CJ-5679 TCGA-CJ-5680 TCGA-CJ-5682 TCGA-CJ-5689 TCGA-CJ-6027 
       18.84        22.29        25.25        61.91         0.20        60.99 
TCGA-CJ-6028 TCGA-CJ-6030 TCGA-CJ-6032 TCGA-CJ-6033 TCGA-CW-5580 TCGA-CW-5584 
       53.42        75.55        83.77         7.36        64.57         5.39 
TCGA-CW-5591 TCGA-CW-6090 TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4858 TCGA-CZ-4860 
       74.63        75.88        46.16        47.08        63.88         6.74 
TCGA-CZ-4864 TCGA-CZ-5452 TCGA-CZ-5456 TCGA-CZ-5460 TCGA-CZ-5461 TCGA-CZ-5462 
       93.04        51.16        51.22        47.01        10.85        10.22 
TCGA-CZ-5464 TCGA-CZ-5465 TCGA-CZ-5466 TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5984 
       49.05        45.27        22.52         1.94        31.07        49.02 
TCGA-CZ-5985 TCGA-CZ-5987 TCGA-DV-5565 TCGA-DV-5575 TCGA-EU-5907 
       53.56        14.30        43.69        33.04         4.14 

$subtype2
TCGA-A3-3307 TCGA-A3-3322 TCGA-A3-3323 TCGA-A3-3324 TCGA-A3-3326 TCGA-A3-3331 
       47.21        48.56        36.33        38.99        37.38        48.82 
TCGA-A3-3343 TCGA-A3-3351 TCGA-A3-3357 TCGA-A3-3358 TCGA-A3-3359 TCGA-A3-3362 
       31.04        29.92        46.85        42.97        42.28        51.25 
TCGA-A3-3365 TCGA-A3-3367 TCGA-A3-3370 TCGA-A3-3373 TCGA-A3-3378 TCGA-A3-3380 
       28.67        34.65        25.51        10.98        20.71        18.64 
TCGA-A3-3383 TCGA-A3-3387 TCGA-AK-3428 TCGA-AK-3429 TCGA-AK-3431 TCGA-AK-3444 
       28.31        20.25        73.08        66.31        60.92        48.36 
TCGA-AK-3451 TCGA-AK-3455 TCGA-AK-3460 TCGA-B0-4693 TCGA-B0-4703 TCGA-B0-4706 
       48.69        22.45        31.27         2.53         5.98         0.85 
TCGA-B0-4714 TCGA-B0-4718 TCGA-B0-4810 TCGA-B0-4814 TCGA-B0-4818 TCGA-B0-4823 
        0.10         7.04         8.75         1.55        14.01        14.93 
TCGA-B0-4824 TCGA-B0-4827 TCGA-B0-4833 TCGA-B0-4837 TCGA-B0-4841 TCGA-B0-4843 
       48.10        29.06        78.41        42.48         4.57        10.52 
TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 TCGA-B0-4945 TCGA-B0-5075 TCGA-B0-5077 
       39.42        26.04         2.27        70.52        19.99        42.44 
TCGA-B0-5085 TCGA-B0-5088 TCGA-B0-5099 TCGA-B0-5104 TCGA-B0-5110 TCGA-B0-5115 
       25.28        14.24        15.95        90.44        18.41         2.96 
TCGA-B0-5119 TCGA-B0-5120 TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5690 TCGA-B0-5692 
        1.58         1.81         6.12         6.25        71.67        48.89 
TCGA-B0-5693 TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5697 TCGA-B0-5698 TCGA-B0-5699 
       60.89        34.26        31.04        37.32        71.70        79.73 
TCGA-B0-5705 TCGA-B0-5706 TCGA-B0-5710 TCGA-B0-5711 TCGA-B0-5713 TCGA-B0-5812 
      109.64        79.36        31.46        83.93        61.28        76.41 
TCGA-B2-3924 TCGA-B2-4099 TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5639 TCGA-B4-5377 
        6.38         3.62         2.96         0.49         6.28         9.57 
TCGA-B4-5834 TCGA-B4-5836 TCGA-B4-5844 TCGA-B8-4146 TCGA-B8-4148 TCGA-B8-4151 
        1.25         4.64         0.23        16.80        12.46         9.17 
TCGA-B8-4153 TCGA-B8-4154 TCGA-B8-5159 TCGA-B8-5164 TCGA-B8-5552 TCGA-B8-5553 
       13.28         8.38         4.37         0.76         7.20         0.46 
TCGA-BP-4158 TCGA-BP-4159 TCGA-BP-4160 TCGA-BP-4162 TCGA-BP-4163 TCGA-BP-4165 
      111.02        85.48        94.72       101.06        93.34        96.85 
TCGA-BP-4166 TCGA-BP-4169 TCGA-BP-4170 TCGA-BP-4326 TCGA-BP-4327 TCGA-BP-4329 
        0.43        23.05        77.03        53.39         3.55        27.78 
TCGA-BP-4330 TCGA-BP-4332 TCGA-BP-4335 TCGA-BP-4340 TCGA-BP-4341 TCGA-BP-4344 
       62.07        37.25        15.12        18.48        52.24        54.77 
TCGA-BP-4346 TCGA-BP-4347 TCGA-BP-4349 TCGA-BP-4355 TCGA-BP-4758 TCGA-BP-4765 
       49.08        44.94        12.23        31.33        72.59        71.80 
TCGA-BP-4774 TCGA-BP-4776 TCGA-BP-4777 TCGA-BP-4789 TCGA-BP-4801 TCGA-BP-4807 
       61.94        13.48        56.91        48.95        36.95         6.94 
TCGA-BP-4965 TCGA-BP-4969 TCGA-BP-4972 TCGA-BP-4974 TCGA-BP-4975 TCGA-BP-4977 
       61.51        58.98        49.35         7.23        47.11        14.93 
TCGA-BP-4981 TCGA-BP-4982 TCGA-BP-4987 TCGA-BP-4991 TCGA-BP-4993 TCGA-BP-4995 
       36.07        33.30        36.95        34.32         5.79        45.07 
TCGA-BP-4999 TCGA-BP-5001 TCGA-BP-5004 TCGA-BP-5006 TCGA-BP-5007 TCGA-BP-5008 
       41.62        38.70        37.02        27.62        37.48        35.21 
TCGA-BP-5168 TCGA-BP-5170 TCGA-BP-5174 TCGA-BP-5176 TCGA-BP-5177 TCGA-BP-5181 
       48.10        79.27        74.20        52.27         9.63        49.15 
TCGA-BP-5182 TCGA-BP-5184 TCGA-BP-5186 TCGA-BP-5187 TCGA-BP-5190 TCGA-BP-5192 
       38.30        37.25        22.78        13.35        33.21        23.47 
TCGA-BP-5194 TCGA-BP-5195 TCGA-BP-5199 TCGA-BP-5200 TCGA-BP-5202 TCGA-CJ-4634 
       13.41        24.59        44.52        28.96         0.95        59.84 
TCGA-CJ-4636 TCGA-CJ-4639 TCGA-CJ-4641 TCGA-CJ-4642 TCGA-CJ-4643 TCGA-CJ-4868 
       63.25        75.88        54.61        53.16        58.92        21.21 
TCGA-CJ-4869 TCGA-CJ-4870 TCGA-CJ-4874 TCGA-CJ-4878 TCGA-CJ-4884 TCGA-CJ-4885 
       83.97        49.22        75.06        71.87        32.65        69.86 
TCGA-CJ-4886 TCGA-CJ-4887 TCGA-CJ-4892 TCGA-CJ-4894 TCGA-CJ-4899 TCGA-CJ-4902 
       64.14        21.34        49.97        27.65        50.20        49.94 
TCGA-CJ-4904 TCGA-CJ-4908 TCGA-CJ-4916 TCGA-CJ-5672 TCGA-CJ-5681 TCGA-CJ-5683 
       58.92        50.30        45.11        72.00        18.12        62.10 
TCGA-CJ-5684 TCGA-CW-5581 TCGA-CW-5583 TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-5589 
       73.32        92.02        81.83        85.78        73.18        78.15 
TCGA-CW-6088 TCGA-CZ-4853 TCGA-CZ-4856 TCGA-CZ-4859 TCGA-CZ-4865 TCGA-CZ-5451 
       75.98        25.45         0.59        58.75         5.42        54.84 
TCGA-CZ-5453 TCGA-CZ-5454 TCGA-CZ-5455 TCGA-CZ-5458 TCGA-CZ-5459 TCGA-CZ-5463 
        0.82        23.74        18.44        51.22        49.81        21.76 
TCGA-CZ-5467 TCGA-CZ-5982 TCGA-CZ-5986 TCGA-CZ-5988 TCGA-CZ-5989 TCGA-DV-5566 
        2.40        67.13        12.26        22.78        52.57        45.96 
TCGA-DV-5568 TCGA-DV-5569 TCGA-DV-5573 TCGA-EU-5904 TCGA-EU-5906 
       12.16        11.67        37.15        18.08         6.77 

$subtype3
TCGA-A3-3308 TCGA-A3-3313 TCGA-A3-3349 TCGA-A3-3363 TCGA-A3-3374 TCGA-A3-3376 
        0.53        24.16        45.53        10.49        43.17        35.18 
TCGA-A3-3385 TCGA-AK-3427 TCGA-AK-3433 TCGA-AK-3440 TCGA-AK-3443 TCGA-AK-3447 
       23.87        84.36        72.07        57.34        46.78        40.01 
TCGA-AK-3453 TCGA-AK-3456 TCGA-AK-3465 TCGA-AS-3777 TCGA-B0-4688 TCGA-B0-4697 
       39.12         1.51        12.13         1.32         3.22        18.97 
TCGA-B0-4698 TCGA-B0-4699 TCGA-B0-4700 TCGA-B0-4701 TCGA-B0-4710 TCGA-B0-4811 
        1.38         3.58        65.06         6.84         0.16        39.32 
TCGA-B0-4816 TCGA-B0-4817 TCGA-B0-4819 TCGA-B0-4822 TCGA-B0-4834 TCGA-B0-4839 
       35.54        27.88         6.02        36.53        68.71        53.85 
TCGA-B0-4844 TCGA-B0-4852 TCGA-B0-5080 TCGA-B0-5081 TCGA-B0-5097 TCGA-B0-5100 
       10.29        35.47         7.30         7.66         4.96        62.89 
TCGA-B0-5106 TCGA-B0-5107 TCGA-B0-5108 TCGA-B0-5400 TCGA-B0-5691 TCGA-B0-5702 
       52.50        30.48         5.33        22.26        91.43        38.07 
TCGA-B0-5709 TCGA-B0-5712 TCGA-B2-3923 TCGA-B2-4098 TCGA-B2-5635 TCGA-B4-5378 
       77.49        80.15         5.85         1.64        10.36         5.75 
TCGA-B4-5838 TCGA-B8-4619 TCGA-B8-4621 TCGA-B8-4622 TCGA-B8-5162 TCGA-B8-5165 
        5.46         0.62         7.07         5.95         0.72         0.26 
TCGA-B8-5545 TCGA-B8-5546 TCGA-B8-5550 TCGA-BP-4167 TCGA-BP-4173 TCGA-BP-4177 
        8.15         0.46         6.48        89.36        62.24        54.90 
TCGA-BP-4334 TCGA-BP-4337 TCGA-BP-4354 TCGA-BP-4759 TCGA-BP-4760 TCGA-BP-4762 
       21.21         0.07        33.99        76.41        73.94        44.15 
TCGA-BP-4769 TCGA-BP-4770 TCGA-BP-4775 TCGA-BP-4782 TCGA-BP-4784 TCGA-BP-4790 
       61.68        10.82        60.56        11.64        60.95        36.53 
TCGA-BP-4795 TCGA-BP-4799 TCGA-BP-4804 TCGA-BP-4961 TCGA-BP-4964 TCGA-BP-4967 
       20.38        37.25        47.97        63.62        61.22         6.71 
TCGA-BP-4968 TCGA-BP-4970 TCGA-BP-4973 TCGA-BP-4976 TCGA-BP-4983 TCGA-BP-4988 
       57.37        14.20        45.50        53.65        46.42        27.19 
TCGA-BP-4994 TCGA-BP-4998 TCGA-BP-5009 TCGA-BP-5196 TCGA-CJ-4637 TCGA-CJ-4872 
       42.97        30.61        35.90        33.47        73.22        47.18 
TCGA-CJ-4875 TCGA-CJ-4882 TCGA-CJ-4888 TCGA-CJ-4889 TCGA-CJ-4890 TCGA-CJ-4891 
       77.36        61.91        51.48        63.95        68.55        26.89 
TCGA-CJ-4897 TCGA-CJ-4905 TCGA-CJ-4907 TCGA-CJ-4913 TCGA-CJ-4918 TCGA-CJ-4920 
       59.44        49.15        49.25        38.56         3.02         4.57 
TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5676 TCGA-CJ-5686 TCGA-CJ-6031 TCGA-CW-5588 
       18.81        63.85        84.66        67.00        62.63        66.28 
TCGA-CW-6087 TCGA-CW-6093 TCGA-CW-6097 TCGA-CZ-4861 TCGA-CZ-4862 TCGA-CZ-4863 
        1.35        79.89        18.74        14.63        60.59        55.56 
TCGA-CZ-4866 TCGA-CZ-5457 TCGA-DV-5567 TCGA-DV-5574 TCGA-DV-5576 TCGA-EU-5905 
       58.13        50.86        29.88        23.77        23.90         3.88 

subtype1 subtype2 subtype3 
    0.13     0.10     0.07 
subtype1 subtype2 subtype3 
  109.91   111.02    91.43 
subtype1 subtype2 subtype3 
   31.27    36.95    35.72 
[1] "0.1 - 109.9 (31.3)" "0.1 - 111.0 (37.0)" "0.1 - 91.4 (35.7)" 
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [43] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [55] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [91] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [97] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[109] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[133] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[139] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[151] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[163] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[175] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[181] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[193] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[199] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[205] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[217] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[223] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[229] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[235] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[241] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[247] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[253] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[259] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[265] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[271] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[277] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[283] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[289] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[295] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[301] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[307] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[313] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[319] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[325] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[331] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[337] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[343] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[349] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[355] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[361] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[367] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[373] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[379] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[385] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[391] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[397] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[403] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[409] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[415] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[421] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[427] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[433] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[439] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[445] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[451] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[457] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[463] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[469] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[475] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[481] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[487] "subtype2" "subtype3" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [43] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [55] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [91] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [97] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[109] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[133] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[139] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[151] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[163] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[175] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[181] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[193] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[199] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[205] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[217] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[223] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[229] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[235] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[241] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[247] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[253] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[259] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[265] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[271] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[277] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[283] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[289] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[295] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[301] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[307] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[313] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[319] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[325] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[331] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[337] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[343] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[349] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[355] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[361] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[367] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[373] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[379] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[385] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[391] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[397] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[403] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[409] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[415] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[421] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[427] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[433] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[439] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[445] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[451] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[457] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[463] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[469] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[475] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[481] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[487] "subtype2" "subtype3" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [43] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [55] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [91] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [97] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[109] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[133] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[139] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[151] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[163] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[175] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[181] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[193] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[199] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[205] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[217] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[223] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[229] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[235] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[241] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[247] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[253] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[259] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[265] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[271] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[277] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[283] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[289] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[295] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[301] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[307] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[313] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[319] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[325] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[331] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[337] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[343] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[349] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[355] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[361] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[367] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[373] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[379] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[385] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[391] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[397] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[403] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[409] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[415] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[421] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[427] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[433] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[439] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[445] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[451] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[457] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[463] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[469] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[475] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[481] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[487] "subtype2" "subtype3" "subtype2" "subtype1"
D3V2, continuous
D3V3, binary
          cls
clus         0   1
  subtype1  39 122
  subtype2  86 124
  subtype3  46  76
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   39  122
  subtype2   86  124
  subtype3   46   76
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       39       86       46
  MALE        122      124       76
D3V4, continuous
D3V5, binary
          cls
clus         0   1
  subtype1 123  38
  subtype2 191  19
  subtype3 103  19
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  123   38
  subtype2  191   19
  subtype3  103   19
    clus
vv   subtype1 subtype2 subtype3
  M0      123      191      103
  M1       38       19       19
          vv
clus        N0  N1  NX
  subtype1  72  11  78
  subtype2 101   3 106
  subtype3  55   4  63
D3V6, multiclass
D3V7, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      57       17        49       38
  subtype2     122       22        48       18
  subtype3      58       14        29       21
D3V8, multiclass

Clustering(4) Variable = METHLYATION_CNMF
D4V1, survival
          sevent
clus2       0  1
  subtype1 47 48
  subtype2 97 20
  subtype3 42 27
subtype1 subtype2 subtype3 
      95      117       69 
subtype1 subtype2 subtype3 
      48       20       27 
$subtype1
TCGA-A3-3357 TCGA-A3-3367 TCGA-A3-3387 TCGA-AK-3434 TCGA-AK-3445 TCGA-B0-4688 
       46.85        34.65        20.25        68.58        42.05         3.22 
TCGA-B0-4691 TCGA-B0-4693 TCGA-B0-4696 TCGA-B0-4701 TCGA-B0-4703 TCGA-B0-4707 
        4.57         2.53        28.47         6.84         5.98        19.69 
TCGA-B0-4710 TCGA-B0-4712 TCGA-B0-4713 TCGA-B0-4714 TCGA-B0-4718 TCGA-B0-4810 
        0.16        43.96         6.61         0.10         7.04         8.75 
TCGA-B0-4811 TCGA-B0-4813 TCGA-B0-4814 TCGA-B0-4821 TCGA-B0-4822 TCGA-B0-4827 
       39.32         0.59         1.55        40.41        36.53        29.06 
TCGA-B0-4828 TCGA-B0-4843 TCGA-B0-4844 TCGA-B0-4845 TCGA-B0-4848 TCGA-B0-5094 
       10.09        10.52        10.29        65.26        29.00        10.95 
TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5099 TCGA-B0-5100 TCGA-B0-5106 TCGA-B0-5107 
        2.20         4.96        15.95        62.89        52.50        30.48 
TCGA-B0-5116 TCGA-B0-5121 TCGA-B0-5402 TCGA-B0-5694 TCGA-B0-5696 TCGA-B0-5698 
        3.39         6.12         0.33        15.42        31.04        71.70 
TCGA-B0-5699 TCGA-B0-5701 TCGA-B0-5706 TCGA-B0-5712 TCGA-B4-5838 TCGA-B8-4153 
       79.73        41.95        79.36        80.15         5.46        13.28 
TCGA-B8-4622 TCGA-B8-5158 TCGA-BP-5010 TCGA-BP-5169 TCGA-BP-5178 TCGA-BP-5180 
        5.95         2.96        28.83         6.31        62.86        62.20 
TCGA-BP-5189 TCGA-BP-5190 TCGA-BP-5198 TCGA-BP-5201 TCGA-CJ-4901 TCGA-CJ-4902 
       27.02        33.21        19.82        31.27        47.67        49.94 
TCGA-CJ-4907 TCGA-CJ-4912 TCGA-CJ-4913 TCGA-CJ-4920 TCGA-CJ-5671 TCGA-CJ-5675 
       49.25        54.44        38.56         4.57        63.85        79.86 
TCGA-CJ-5676 TCGA-CJ-5677 TCGA-CJ-5678 TCGA-CJ-5679 TCGA-CJ-5680 TCGA-CJ-5682 
       84.66        25.71        18.84        22.29        25.25        61.91 
TCGA-CJ-5689 TCGA-CJ-6027 TCGA-CJ-6030 TCGA-CJ-6033 TCGA-CW-5580 TCGA-CW-5584 
        0.20        60.99        75.55         7.36        64.57         5.39 
TCGA-CW-5590 TCGA-CW-5591 TCGA-CW-6090 TCGA-CZ-4853 TCGA-CZ-4866 TCGA-CZ-5456 
       35.34        74.63        75.88        25.45        58.13        51.22 
TCGA-CZ-5457 TCGA-CZ-5460 TCGA-CZ-5461 TCGA-CZ-5464 TCGA-CZ-5465 TCGA-CZ-5466 
       50.86        47.01        10.85        49.05        45.27        22.52 
TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5985 TCGA-CZ-5987 TCGA-EU-5907 
        1.94        31.07        53.56        14.30         4.14 

$subtype2
TCGA-A3-3358 TCGA-A3-3370 TCGA-A3-3373 TCGA-A3-3376 TCGA-A3-3385 TCGA-AK-3428 
       42.97        25.51        10.98        35.18        23.87        73.08 
TCGA-AK-3431 TCGA-AK-3433 TCGA-AK-3440 TCGA-AK-3450 TCGA-AK-3453 TCGA-AK-3454 
       60.92        72.07        57.34        49.28        39.12        28.70 
TCGA-AK-3458 TCGA-AK-3460 TCGA-AK-3461 TCGA-B0-4706 TCGA-B0-4818 TCGA-B0-4823 
       38.40        31.27        28.04         0.85        14.01        14.93 
TCGA-B0-4824 TCGA-B0-4841 TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 TCGA-B0-4852 
       48.10         4.57        39.42        26.04         2.27        35.47 
TCGA-B0-4945 TCGA-B0-5102 TCGA-B0-5104 TCGA-B0-5110 TCGA-B0-5113 TCGA-B0-5115 
       70.52        90.84        90.44        18.41         0.72         2.96 
TCGA-B0-5119 TCGA-B0-5120 TCGA-B0-5399 TCGA-B0-5690 TCGA-B0-5691 TCGA-B0-5693 
        1.58         1.81         6.25        71.67        91.43        60.89 
TCGA-B0-5695 TCGA-B0-5700 TCGA-B0-5703 TCGA-B0-5705 TCGA-B0-5707 TCGA-B0-5710 
       34.26        12.33         8.61       109.64        85.22        31.46 
TCGA-B0-5711 TCGA-B0-5713 TCGA-B0-5812 TCGA-B2-4101 TCGA-B2-5639 TCGA-B4-5377 
       83.93        61.28        76.41         2.96         6.28         9.57 
TCGA-B4-5378 TCGA-B4-5834 TCGA-B4-5836 TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4146 
        5.75         1.25         4.64         0.36         0.23        16.80 
TCGA-B8-5159 TCGA-B8-5165 TCGA-B8-5545 TCGA-B8-5546 TCGA-B8-5549 TCGA-B8-5552 
        4.37         0.26         8.15         0.46         6.38         7.20 
TCGA-B8-5553 TCGA-BP-4782 TCGA-BP-4801 TCGA-BP-4993 TCGA-BP-5168 TCGA-BP-5173 
        0.46        11.64        36.95         5.79        48.10         1.78 
TCGA-BP-5174 TCGA-BP-5176 TCGA-BP-5177 TCGA-BP-5181 TCGA-BP-5183 TCGA-BP-5184 
       74.20        52.27         9.63        49.15        36.23        37.25 
TCGA-BP-5185 TCGA-BP-5186 TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5199 TCGA-BP-5200 
       37.22        22.78        23.47        13.41        44.52        28.96 
TCGA-BP-5202 TCGA-CJ-4897 TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4905 TCGA-CJ-4908 
        0.95        59.44        51.25        58.92        49.15        50.30 
TCGA-CJ-5681 TCGA-CJ-5683 TCGA-CJ-5684 TCGA-CJ-6032 TCGA-CW-5581 TCGA-CW-5583 
       18.12        62.10        73.32        83.77        92.02        81.83 
TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-5589 TCGA-CW-6088 TCGA-CW-6093 TCGA-CZ-4856 
       85.78        73.18        78.15        75.98        79.89         0.59 
TCGA-CZ-4859 TCGA-CZ-4864 TCGA-CZ-5451 TCGA-CZ-5453 TCGA-CZ-5454 TCGA-CZ-5455 
       58.75        93.04        54.84         0.82        23.74        18.44 
TCGA-CZ-5459 TCGA-CZ-5463 TCGA-CZ-5467 TCGA-CZ-5982 TCGA-CZ-5986 TCGA-CZ-5988 
       49.81        21.76         2.40        67.13        12.26        22.78 
TCGA-CZ-5989 TCGA-DV-5565 TCGA-DV-5566 TCGA-DV-5567 TCGA-DV-5569 TCGA-DV-5573 
       52.57        43.69        45.96        29.88        11.67        37.15 
TCGA-DV-5575 TCGA-EU-5904 TCGA-EU-5906 
       33.04        18.08         6.77 

$subtype3
TCGA-AK-3425 TCGA-B0-4690 TCGA-B0-4694 TCGA-B0-4697 TCGA-B0-4698 TCGA-B0-4699 
      109.91         1.41         3.48        18.97         1.38         3.58 
TCGA-B0-4700 TCGA-B0-4815 TCGA-B0-4816 TCGA-B0-4817 TCGA-B0-4819 TCGA-B0-4842 
       65.06        49.02        35.54        27.88         6.02        53.79 
TCGA-B0-5080 TCGA-B0-5083 TCGA-B0-5092 TCGA-B0-5095 TCGA-B0-5098 TCGA-B0-5108 
        7.30        15.29        15.09         8.05        52.08         5.33 
TCGA-B0-5109 TCGA-B0-5400 TCGA-B0-5692 TCGA-B0-5697 TCGA-B0-5702 TCGA-B0-5709 
       19.27        22.26        48.89        37.32        38.07        77.49 
TCGA-B2-5633 TCGA-B2-5635 TCGA-B2-5636 TCGA-B2-5641 TCGA-B4-5832 TCGA-B4-5835 
        7.04        10.36         8.48         5.52         0.23         0.53 
TCGA-B8-4621 TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5164 TCGA-B8-5550 TCGA-B8-5551 
        7.07         0.72         0.13         0.76         6.48         0.49 
TCGA-BP-4177 TCGA-BP-4760 TCGA-BP-4770 TCGA-BP-4795 TCGA-BP-5170 TCGA-BP-5175 
       54.90        73.94        10.82        20.38        79.27        30.64 
TCGA-BP-5182 TCGA-BP-5187 TCGA-BP-5191 TCGA-BP-5195 TCGA-BP-5196 TCGA-CJ-4869 
       38.30        13.35        31.76        24.59        33.47        83.97 
TCGA-CJ-4882 TCGA-CJ-4916 TCGA-CJ-4918 TCGA-CJ-4923 TCGA-CJ-5672 TCGA-CJ-5686 
       61.91        45.11         3.02        18.81        72.00        67.00 
TCGA-CJ-6028 TCGA-CJ-6031 TCGA-CW-5588 TCGA-CW-6087 TCGA-CW-6097 TCGA-CZ-4863 
       53.42        62.63        66.28         1.35        18.74        55.56 
TCGA-CZ-4865 TCGA-CZ-5452 TCGA-CZ-5458 TCGA-CZ-5462 TCGA-CZ-5984 TCGA-DV-5568 
        5.42        51.16        51.22        10.22        49.02        12.16 
TCGA-DV-5574 TCGA-DV-5576 TCGA-EU-5905 
       23.77        23.90         3.88 

subtype1 subtype2 subtype3 
    0.10     0.23     0.13 
subtype1 subtype2 subtype3 
   84.66   109.64   109.91 
subtype1 subtype2 subtype3 
   28.83    31.46    20.38 
[1] "0.1 - 84.7 (28.8)"  "0.2 - 109.6 (31.5)" "0.1 - 109.9 (20.4)"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [25] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [67] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [97] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[103] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[127] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[145] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[157] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[175] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[181] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[199] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[205] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[211] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[217] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[223] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[235] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[241] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[247] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[253] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[259] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[265] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[277] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [25] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [67] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [97] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[103] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[127] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[145] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[157] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[175] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[181] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[199] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[205] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[211] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[217] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[223] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[235] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[241] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[247] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[253] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[259] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[265] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[277] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [25] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [67] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [97] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[103] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[127] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[145] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[157] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[175] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[181] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[199] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[205] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[211] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[217] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[223] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[235] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[241] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[247] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[253] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[259] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[265] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[277] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
D4V2, continuous
D4V3, binary
          cls
clus        0  1
  subtype1 20 76
  subtype2 55 63
  subtype3 21 48
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   20   76
  subtype2   55   63
  subtype3   21   48
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       20       55       21
  MALE         76       63       48
D4V4, continuous
D4V5, binary
          cls
clus         0   1
  subtype1  67  29
  subtype2 108  10
  subtype3  57  12
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   67   29
  subtype2  108   10
  subtype3   57   12
    clus
vv   subtype1 subtype2 subtype3
  M0       67      108       57
  M1       29       10       12
          vv
clus       N0 N1 NX
  subtype1 41  5 50
  subtype2 54  1 63
  subtype3 32  3 34
D4V6, multiclass
D4V7, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      19        9        38       30
  subtype2      79       15        15        9
  subtype3      31        3        21       14
D4V8, multiclass

Clustering(5) Variable = RPPA_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 75 26
  subtype2 55 35
  subtype3 63 22
  subtype4 52 23
  subtype5 36  8
  subtype6 20 37
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
     101       90       85       75       44       57 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
      26       35       22       23        8       37 
$subtype1
TCGA-A3-3306 TCGA-A3-3320 TCGA-A3-3329 TCGA-A3-3352 TCGA-A3-3367 TCGA-A3-3380 
       36.82        49.58        23.21        18.44        34.65        18.64 
TCGA-A3-3383 TCGA-A3-3385 TCGA-AK-3434 TCGA-B0-4706 TCGA-B0-4811 TCGA-B0-4816 
       28.31        23.87        68.58         0.85        39.32        35.54 
TCGA-B0-4818 TCGA-B0-4824 TCGA-B0-4833 TCGA-B0-4841 TCGA-B0-4845 TCGA-B0-4846 
       14.01        48.10        78.41         4.57        65.26        39.42 
TCGA-B0-4849 TCGA-B0-4852 TCGA-B0-5085 TCGA-B0-5102 TCGA-B0-5110 TCGA-B0-5115 
        2.27        35.47        25.28        90.84        18.41         2.96 
TCGA-B0-5119 TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5402 TCGA-B0-5690 TCGA-B0-5693 
        1.58         6.12         6.25         0.33        71.67        60.89 
TCGA-B0-5694 TCGA-B0-5695 TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5705 TCGA-B0-5711 
       15.42        34.26        71.70        79.73       109.64        83.93 
TCGA-B0-5712 TCGA-B0-5713 TCGA-B0-5812 TCGA-B2-4099 TCGA-B2-4101 TCGA-B4-5377 
       80.15        61.28        76.41         3.62         2.96         9.57 
TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4153 TCGA-BP-4158 TCGA-BP-4161 TCGA-BP-4164 
        0.36         0.23        13.28       111.02        90.28        32.61 
TCGA-BP-4325 TCGA-BP-4327 TCGA-BP-4329 TCGA-BP-4330 TCGA-BP-4335 TCGA-BP-4342 
       97.45         3.55        27.78        62.07        15.12        74.17 
TCGA-BP-4758 TCGA-BP-4759 TCGA-BP-4768 TCGA-BP-4774 TCGA-BP-4776 TCGA-BP-4961 
       72.59        76.41        13.15        61.94        13.48        63.62 
TCGA-BP-4975 TCGA-BP-4981 TCGA-BP-4991 TCGA-BP-4995 TCGA-BP-4999 TCGA-BP-5001 
       47.11        36.07        34.32        45.07        41.62        38.70 
TCGA-BP-5007 TCGA-BP-5168 TCGA-BP-5170 TCGA-BP-5176 TCGA-BP-5180 TCGA-BP-5181 
       37.48        48.10        79.27        52.27        62.20        49.15 
TCGA-BP-5192 TCGA-BP-5201 TCGA-CJ-4634 TCGA-CJ-4870 TCGA-CJ-4871 TCGA-CJ-4874 
       23.47        31.27        59.84        49.22        79.63        75.06 
TCGA-CJ-4878 TCGA-CJ-4897 TCGA-CJ-4904 TCGA-CJ-4916 TCGA-CJ-5675 TCGA-CJ-5676 
       71.87        59.44        58.92        45.11        79.86        84.66 
TCGA-CJ-5678 TCGA-CJ-5680 TCGA-CJ-5683 TCGA-CW-5583 TCGA-CW-5585 TCGA-CW-5587 
       18.84        25.25        62.10        81.83        85.78        73.18 
TCGA-CZ-4859 TCGA-CZ-5451 TCGA-CZ-5455 TCGA-CZ-5465 TCGA-CZ-5467 TCGA-CZ-5982 
       58.75        54.84        18.44        45.27         2.40        67.13 
TCGA-CZ-5986 TCGA-CZ-5989 TCGA-DV-5565 TCGA-DV-5575 TCGA-EU-5906 
       12.26        52.57        43.69        33.04         6.77 

$subtype2
TCGA-A3-3308 TCGA-A3-3316 TCGA-A3-3349 TCGA-A3-3365 TCGA-A3-3376 TCGA-AK-3451 
        0.53        49.08        45.53        28.67        35.18        48.69 
TCGA-B0-4688 TCGA-B0-4697 TCGA-B0-4700 TCGA-B0-4701 TCGA-B0-4703 TCGA-B0-4815 
        3.22        18.97        65.06         6.84         5.98        49.02 
TCGA-B0-4819 TCGA-B0-4823 TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-4843 TCGA-B0-5080 
        6.02        14.93        40.70        42.48        10.52         7.30 
TCGA-B0-5088 TCGA-B0-5095 TCGA-B0-5097 TCGA-B0-5100 TCGA-B0-5104 TCGA-B0-5106 
       14.24         8.05         4.96        62.89        90.44        52.50 
TCGA-B0-5108 TCGA-B0-5120 TCGA-B0-5706 TCGA-B0-5710 TCGA-B2-5636 TCGA-B4-5378 
        5.33         1.81        79.36        31.46         8.48         5.75 
TCGA-B4-5834 TCGA-B4-5836 TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5545 TCGA-B8-5551 
        1.25         4.64         0.72         0.13         8.15         0.49 
TCGA-BP-4169 TCGA-BP-4337 TCGA-BP-4345 TCGA-BP-4349 TCGA-BP-4355 TCGA-BP-4762 
       23.05         0.07        49.84        12.23        31.33        44.15 
TCGA-BP-4765 TCGA-BP-4769 TCGA-BP-4770 TCGA-BP-4784 TCGA-BP-4804 TCGA-BP-4960 
       71.80        61.68        10.82        60.95        47.97        71.41 
TCGA-BP-4962 TCGA-BP-4970 TCGA-BP-4971 TCGA-BP-4974 TCGA-BP-4998 TCGA-BP-5010 
       58.68        14.20        48.89         7.23        30.61        28.83 
TCGA-BP-5177 TCGA-BP-5196 TCGA-BP-5199 TCGA-BP-5200 TCGA-CJ-4868 TCGA-CJ-4872 
        9.63        33.47        44.52        28.96        21.21        47.18 
TCGA-CJ-4882 TCGA-CJ-4886 TCGA-CJ-4889 TCGA-CJ-4890 TCGA-CJ-4892 TCGA-CJ-4894 
       61.91        64.14        63.95        68.55        49.97        27.65 
TCGA-CJ-4895 TCGA-CJ-4899 TCGA-CJ-4900 TCGA-CJ-4902 TCGA-CJ-4905 TCGA-CJ-4908 
       39.45        50.20        41.88        49.94        49.15        50.30 
TCGA-CJ-4918 TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5682 TCGA-CJ-5684 TCGA-CJ-5686 
        3.02        18.81        63.85        61.91        73.32        67.00 
TCGA-CJ-5689 TCGA-CJ-6033 TCGA-CW-6088 TCGA-CW-6090 TCGA-CW-6097 TCGA-CZ-4856 
        0.20         7.36        75.98        75.88        18.74         0.59 
TCGA-CZ-4860 TCGA-CZ-5454 TCGA-CZ-5988 TCGA-DV-5567 TCGA-DV-5574 TCGA-EU-5904 
        6.74        23.74        22.78        29.88        23.77        18.08 

$subtype3
TCGA-A3-3311 TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3323 TCGA-A3-3335 TCGA-A3-3336 
       39.12        49.02        37.15        36.33        21.83        34.29 
TCGA-A3-3347 TCGA-A3-3351 TCGA-A3-3372 TCGA-A3-3387 TCGA-B0-4838 TCGA-B0-4839 
       36.07        29.92        24.16        20.25        23.93        53.85 
TCGA-B0-4847 TCGA-B0-4945 TCGA-B0-5075 TCGA-B0-5081 TCGA-B0-5691 TCGA-B0-5692 
       26.04        70.52        19.99         7.66        91.43        48.89 
TCGA-B0-5697 TCGA-B0-5701 TCGA-B0-5707 TCGA-B2-4102 TCGA-B2-5633 TCGA-B2-5635 
       37.32        41.95        85.22         0.49         7.04        10.36 
TCGA-B2-5639 TCGA-B2-5641 TCGA-B4-5832 TCGA-B4-5835 TCGA-B8-4143 TCGA-B8-5159 
        6.28         5.52         0.23         0.53        23.31         4.37 
TCGA-B8-5164 TCGA-B8-5546 TCGA-B8-5550 TCGA-B8-5553 TCGA-BP-4343 TCGA-BP-4346 
        0.76         0.46         6.48         0.46        62.86        49.08 
TCGA-BP-4351 TCGA-BP-4756 TCGA-BP-4803 TCGA-BP-4963 TCGA-BP-4968 TCGA-BP-4973 
       31.86        12.30         6.67        60.30        57.37        45.50 
TCGA-BP-4977 TCGA-BP-5189 TCGA-BP-5190 TCGA-BP-5191 TCGA-BP-5195 TCGA-CJ-4635 
       14.93        27.02        33.21        31.76        24.59        46.55 
TCGA-CJ-4640 TCGA-CJ-4873 TCGA-CJ-4876 TCGA-CJ-4884 TCGA-CJ-4887 TCGA-CJ-4888 
       65.69        74.24        64.27        32.65        21.34        51.48 
TCGA-CJ-4893 TCGA-CJ-4903 TCGA-CJ-4907 TCGA-CJ-4912 TCGA-CJ-5672 TCGA-CJ-5677 
       24.62        51.25        49.25        54.44        72.00        25.71 
TCGA-CJ-6030 TCGA-CW-5580 TCGA-CW-5581 TCGA-CW-5584 TCGA-CW-5588 TCGA-CW-5590 
       75.55        64.57        92.02         5.39        66.28        35.34 
TCGA-CW-5591 TCGA-CZ-4853 TCGA-CZ-4862 TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-4866 
       74.63        25.45        60.59        55.56        93.04        58.13 
TCGA-CZ-5452 TCGA-CZ-5456 TCGA-CZ-5458 TCGA-CZ-5461 TCGA-CZ-5463 TCGA-CZ-5464 
       51.16        51.22        51.22        10.85        21.76        49.05 
TCGA-CZ-5466 TCGA-CZ-5469 TCGA-CZ-5984 TCGA-CZ-5985 TCGA-DV-5573 TCGA-EU-5905 
       22.52        31.07        49.02        53.56        37.15         3.88 
TCGA-EU-5907 
        4.14 

$subtype4
TCGA-A3-3313 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3326 TCGA-A3-3346 TCGA-A3-3357 
       24.16        48.56        38.99        37.38         4.50        46.85 
TCGA-A3-3362 TCGA-A3-3363 TCGA-A3-3373 TCGA-A3-3374 TCGA-A3-3378 TCGA-A3-3382 
       51.25        10.49        10.98        43.17        20.71        18.87 
TCGA-AK-3427 TCGA-AK-3428 TCGA-AK-3444 TCGA-AK-3456 TCGA-B0-4699 TCGA-B0-4714 
       84.36        73.08        48.36         1.51         3.58         0.10 
TCGA-B0-4817 TCGA-B0-4834 TCGA-B0-5077 TCGA-B0-5084 TCGA-B0-5096 TCGA-B0-5098 
       27.88        68.71        42.44         7.27         2.20        52.08 
TCGA-B0-5109 TCGA-B0-5400 TCGA-B0-5700 TCGA-B0-5702 TCGA-B0-5703 TCGA-B2-3923 
       19.27        22.26        12.33        38.07         8.61         5.85 
TCGA-B2-3924 TCGA-B2-4098 TCGA-B8-4146 TCGA-B8-4620 TCGA-B8-4621 TCGA-B8-5549 
        6.38         1.64        16.80         7.43         7.07         6.38 
TCGA-BP-4165 TCGA-BP-4170 TCGA-BP-4174 TCGA-BP-4332 TCGA-BP-4334 TCGA-BP-4338 
       96.85        77.03        61.78        37.25        21.21        90.28 
TCGA-BP-4341 TCGA-BP-4353 TCGA-BP-4766 TCGA-BP-4777 TCGA-BP-4799 TCGA-BP-4801 
       52.24        12.33        48.03        56.91        37.25        36.95 
TCGA-BP-4959 TCGA-BP-4964 TCGA-BP-4967 TCGA-BP-4969 TCGA-BP-4972 TCGA-BP-4988 
       87.45        61.22         6.71        58.98        49.35        27.19 
TCGA-BP-4989 TCGA-BP-4993 TCGA-BP-4994 TCGA-BP-5004 TCGA-BP-5169 TCGA-BP-5178 
        3.85         5.79        42.97        37.02         6.31        62.86 
TCGA-BP-5185 TCGA-BP-5187 TCGA-BP-5194 TCGA-BP-5198 TCGA-CJ-4885 TCGA-CJ-4901 
       37.22        13.35        13.41        19.82        69.86        47.67 
TCGA-CJ-5681 TCGA-CJ-6028 TCGA-CJ-6031 TCGA-CZ-4861 TCGA-CZ-4865 TCGA-CZ-5453 
       18.12        53.42        62.63        14.63         5.42         0.82 
TCGA-CZ-5457 TCGA-CZ-5459 TCGA-CZ-5462 
       50.86        49.81        10.22 

$subtype5
TCGA-A3-3331 TCGA-A3-3370 TCGA-B0-4693 TCGA-B0-4710 TCGA-B0-5099 TCGA-B0-5113 
       48.82        25.51         2.53         0.16        15.95         0.72 
TCGA-B0-5116 TCGA-B8-5165 TCGA-B8-5552 TCGA-BP-4331 TCGA-BP-4344 TCGA-BP-4347 
        3.39         0.26         7.20        80.65        54.77        44.94 
TCGA-BP-4760 TCGA-BP-4763 TCGA-BP-4775 TCGA-BP-4781 TCGA-BP-4789 TCGA-BP-4790 
       73.94        41.75        60.56        68.38        48.95        36.53 
TCGA-BP-4797 TCGA-BP-4807 TCGA-BP-4965 TCGA-BP-4976 TCGA-BP-4982 TCGA-BP-4986 
       36.39         6.94        61.51        53.65        33.30        25.81 
TCGA-BP-4987 TCGA-BP-5006 TCGA-BP-5008 TCGA-BP-5009 TCGA-BP-5173 TCGA-BP-5174 
       36.95        27.62        35.21        35.90         1.78        74.20 
TCGA-BP-5182 TCGA-BP-5183 TCGA-BP-5184 TCGA-BP-5186 TCGA-BP-5202 TCGA-CJ-4642 
       38.30        36.23        37.25        22.78         0.95        53.16 
TCGA-CJ-6032 TCGA-CW-5589 TCGA-CW-6093 TCGA-CW-6096 TCGA-DV-5566 TCGA-DV-5568 
       83.77        78.15        79.89        69.93        45.96        12.16 
TCGA-DV-5569 TCGA-DV-5576 
       11.67        23.90 

$subtype6
TCGA-AK-3436 TCGA-B0-4690 TCGA-B0-4691 TCGA-B0-4694 TCGA-B0-4696 TCGA-B0-4698 
       67.17         1.41         4.57         3.48        28.47         1.38 
TCGA-B0-4707 TCGA-B0-4712 TCGA-B0-4713 TCGA-B0-4718 TCGA-B0-4810 TCGA-B0-4813 
       19.69        43.96         6.61         7.04         8.75         0.59 
TCGA-B0-4814 TCGA-B0-4821 TCGA-B0-4822 TCGA-B0-4827 TCGA-B0-4828 TCGA-B0-4842 
        1.55        40.41        36.53        29.06        10.09        53.79 
TCGA-B0-4844 TCGA-B0-4848 TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5107 TCGA-B0-5696 
       10.29        29.00        15.09        10.95        30.48        31.04 
TCGA-B0-5709 TCGA-B4-5838 TCGA-B8-4622 TCGA-B8-5158 TCGA-BP-4173 TCGA-BP-4326 
       77.49         5.46         5.95         2.96        62.24        53.39 
TCGA-BP-4352 TCGA-BP-4354 TCGA-BP-4761 TCGA-BP-4771 TCGA-BP-4787 TCGA-BP-4798 
       11.31        33.99         5.98         5.29        15.75        10.98 
TCGA-BP-4983 TCGA-BP-4985 TCGA-BP-4992 TCGA-BP-5000 TCGA-BP-5175 TCGA-CJ-4638 
       46.42        31.27        16.44        18.51        30.64        14.17 
TCGA-CJ-4869 TCGA-CJ-4875 TCGA-CJ-4881 TCGA-CJ-4891 TCGA-CJ-4913 TCGA-CJ-4920 
       83.97        77.36        66.18        26.89        38.56         4.57 
TCGA-CJ-5679 TCGA-CJ-6027 TCGA-CW-6087 TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4858 
       22.29        60.99         1.35        46.16        47.08        63.88 
TCGA-CZ-5460 TCGA-CZ-5468 TCGA-CZ-5987 
       47.01         1.94        14.30 

subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
    0.23     0.07     0.23     0.10     0.16     0.59 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
  111.02    90.44    93.04    96.85    83.77    83.97 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
   43.69    29.42    35.34    27.88    36.46    19.69 
[1] "0.2 - 111.0 (43.7)" "0.1 - 90.4 (29.4)"  "0.2 - 93.0 (35.3)" 
[4] "0.1 - 96.8 (27.9)"  "0.2 - 83.8 (36.5)"  "0.6 - 84.0 (19.7)" 
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype2" "subtype3"
  [7] "subtype3" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
 [13] "subtype1" "subtype5" "subtype3" "subtype3" "subtype4" "subtype3"
 [19] "subtype2" "subtype3" "subtype1" "subtype4" "subtype4" "subtype4"
 [25] "subtype2" "subtype1" "subtype5" "subtype3" "subtype4" "subtype4"
 [31] "subtype2" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
 [37] "subtype3" "subtype4" "subtype4" "subtype1" "subtype6" "subtype4"
 [43] "subtype2" "subtype4" "subtype2" "subtype6" "subtype6" "subtype5"
 [49] "subtype6" "subtype6" "subtype2" "subtype6" "subtype4" "subtype2"
 [55] "subtype2" "subtype2" "subtype1" "subtype6" "subtype5" "subtype6"
 [61] "subtype6" "subtype4" "subtype6" "subtype6" "subtype1" "subtype6"
 [67] "subtype6" "subtype2" "subtype1" "subtype4" "subtype1" "subtype2"
 [73] "subtype6" "subtype6" "subtype2" "subtype1" "subtype6" "subtype6"
 [79] "subtype1" "subtype4" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype1" "subtype6" "subtype2" "subtype6" "subtype1" "subtype1"
 [91] "subtype3" "subtype6" "subtype1" "subtype1" "subtype3" "subtype3"
 [97] "subtype4" "subtype2" "subtype3" "subtype4" "subtype1" "subtype2"
[103] "subtype6" "subtype6" "subtype2" "subtype4" "subtype2" "subtype4"
[109] "subtype5" "subtype2" "subtype1" "subtype2" "subtype2" "subtype6"
[115] "subtype2" "subtype4" "subtype1" "subtype5" "subtype1" "subtype5"
[121] "subtype1" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
[127] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[133] "subtype6" "subtype3" "subtype1" "subtype1" "subtype4" "subtype3"
[139] "subtype4" "subtype4" "subtype1" "subtype2" "subtype3" "subtype6"
[145] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
[151] "subtype4" "subtype4" "subtype1" "subtype1" "subtype3" "subtype3"
[157] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype2" "subtype6" "subtype1"
[169] "subtype1" "subtype3" "subtype4" "subtype1" "subtype4" "subtype4"
[175] "subtype6" "subtype6" "subtype3" "subtype2" "subtype2" "subtype3"
[181] "subtype5" "subtype2" "subtype3" "subtype4" "subtype3" "subtype2"
[187] "subtype5" "subtype3" "subtype1" "subtype1" "subtype1" "subtype4"
[193] "subtype2" "subtype4" "subtype6" "subtype4" "subtype1" "subtype6"
[199] "subtype1" "subtype1" "subtype1" "subtype5" "subtype4" "subtype4"
[205] "subtype1" "subtype2" "subtype4" "subtype4" "subtype1" "subtype3"
[211] "subtype5" "subtype2" "subtype3" "subtype5" "subtype2" "subtype3"
[217] "subtype6" "subtype4" "subtype6" "subtype2" "subtype3" "subtype1"
[223] "subtype1" "subtype5" "subtype6" "subtype2" "subtype5" "subtype2"
[229] "subtype4" "subtype1" "subtype2" "subtype2" "subtype6" "subtype1"
[235] "subtype5" "subtype1" "subtype4" "subtype5" "subtype2" "subtype6"
[241] "subtype5" "subtype5" "subtype5" "subtype6" "subtype4" "subtype4"
[247] "subtype3" "subtype2" "subtype5" "subtype4" "subtype2" "subtype1"
[253] "subtype2" "subtype3" "subtype4" "subtype5" "subtype4" "subtype3"
[259] "subtype4" "subtype2" "subtype2" "subtype4" "subtype3" "subtype2"
[265] "subtype1" "subtype5" "subtype3" "subtype1" "subtype5" "subtype6"
[271] "subtype6" "subtype5" "subtype5" "subtype4" "subtype4" "subtype1"
[277] "subtype6" "subtype4" "subtype4" "subtype1" "subtype2" "subtype1"
[283] "subtype6" "subtype1" "subtype4" "subtype5" "subtype1" "subtype5"
[289] "subtype5" "subtype2" "subtype1" "subtype4" "subtype1" "subtype5"
[295] "subtype5" "subtype6" "subtype1" "subtype2" "subtype4" "subtype1"
[301] "subtype1" "subtype5" "subtype5" "subtype5" "subtype4" "subtype5"
[307] "subtype4" "subtype3" "subtype3" "subtype3" "subtype1" "subtype4"
[313] "subtype3" "subtype2" "subtype4" "subtype2" "subtype2" "subtype1"
[319] "subtype5" "subtype1" "subtype3" "subtype6" "subtype3" "subtype5"
[325] "subtype2" "subtype6" "subtype1" "subtype1" "subtype2" "subtype3"
[331] "subtype1" "subtype6" "subtype3" "subtype1" "subtype6" "subtype2"
[337] "subtype3" "subtype4" "subtype2" "subtype3" "subtype3" "subtype2"
[343] "subtype2" "subtype6" "subtype2" "subtype3" "subtype2" "subtype2"
[349] "subtype1" "subtype2" "subtype2" "subtype4" "subtype2" "subtype3"
[355] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype6"
[361] "subtype1" "subtype2" "subtype6" "subtype2" "subtype2" "subtype3"
[367] "subtype1" "subtype1" "subtype3" "subtype1" "subtype6" "subtype1"
[373] "subtype4" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[379] "subtype6" "subtype4" "subtype3" "subtype4" "subtype5" "subtype2"
[385] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[391] "subtype3" "subtype5" "subtype3" "subtype3" "subtype6" "subtype2"
[397] "subtype2" "subtype5" "subtype5" "subtype2" "subtype3" "subtype6"
[403] "subtype2" "subtype6" "subtype6" "subtype1" "subtype2" "subtype4"
[409] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype1"
[415] "subtype3" "subtype4" "subtype2" "subtype1" "subtype3" "subtype4"
[421] "subtype3" "subtype4" "subtype6" "subtype3" "subtype4" "subtype3"
[427] "subtype3" "subtype1" "subtype3" "subtype1" "subtype6" "subtype3"
[433] "subtype1" "subtype3" "subtype3" "subtype1" "subtype6" "subtype2"
[439] "subtype1" "subtype1" "subtype5" "subtype2" "subtype5" "subtype5"
[445] "subtype3" "subtype2" "subtype1" "subtype5" "subtype2" "subtype3"
[451] "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype2" "subtype3"
  [7] "subtype3" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
 [13] "subtype1" "subtype5" "subtype3" "subtype3" "subtype4" "subtype3"
 [19] "subtype2" "subtype3" "subtype1" "subtype4" "subtype4" "subtype4"
 [25] "subtype2" "subtype1" "subtype5" "subtype3" "subtype4" "subtype4"
 [31] "subtype2" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
 [37] "subtype3" "subtype4" "subtype4" "subtype1" "subtype6" "subtype4"
 [43] "subtype2" "subtype4" "subtype2" "subtype6" "subtype6" "subtype5"
 [49] "subtype6" "subtype6" "subtype2" "subtype6" "subtype4" "subtype2"
 [55] "subtype2" "subtype2" "subtype1" "subtype6" "subtype5" "subtype6"
 [61] "subtype6" "subtype4" "subtype6" "subtype6" "subtype1" "subtype6"
 [67] "subtype6" "subtype2" "subtype1" "subtype4" "subtype1" "subtype2"
 [73] "subtype6" "subtype6" "subtype2" "subtype1" "subtype6" "subtype6"
 [79] "subtype1" "subtype4" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype1" "subtype6" "subtype2" "subtype6" "subtype1" "subtype1"
 [91] "subtype3" "subtype6" "subtype1" "subtype1" "subtype3" "subtype3"
 [97] "subtype4" "subtype2" "subtype3" "subtype4" "subtype1" "subtype2"
[103] "subtype6" "subtype6" "subtype2" "subtype4" "subtype2" "subtype4"
[109] "subtype5" "subtype2" "subtype1" "subtype2" "subtype2" "subtype6"
[115] "subtype2" "subtype4" "subtype1" "subtype5" "subtype1" "subtype5"
[121] "subtype1" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
[127] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[133] "subtype6" "subtype3" "subtype1" "subtype1" "subtype4" "subtype3"
[139] "subtype4" "subtype4" "subtype1" "subtype2" "subtype3" "subtype6"
[145] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
[151] "subtype4" "subtype4" "subtype1" "subtype1" "subtype3" "subtype3"
[157] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype2" "subtype6" "subtype1"
[169] "subtype1" "subtype3" "subtype4" "subtype1" "subtype4" "subtype4"
[175] "subtype6" "subtype6" "subtype3" "subtype2" "subtype2" "subtype3"
[181] "subtype5" "subtype2" "subtype3" "subtype4" "subtype3" "subtype2"
[187] "subtype5" "subtype3" "subtype1" "subtype1" "subtype1" "subtype4"
[193] "subtype2" "subtype4" "subtype6" "subtype4" "subtype1" "subtype6"
[199] "subtype1" "subtype1" "subtype1" "subtype5" "subtype4" "subtype4"
[205] "subtype1" "subtype2" "subtype4" "subtype4" "subtype1" "subtype3"
[211] "subtype5" "subtype2" "subtype3" "subtype5" "subtype2" "subtype3"
[217] "subtype6" "subtype4" "subtype6" "subtype2" "subtype3" "subtype1"
[223] "subtype1" "subtype5" "subtype6" "subtype2" "subtype5" "subtype2"
[229] "subtype4" "subtype1" "subtype2" "subtype2" "subtype6" "subtype1"
[235] "subtype5" "subtype1" "subtype4" "subtype5" "subtype2" "subtype6"
[241] "subtype5" "subtype5" "subtype5" "subtype6" "subtype4" "subtype4"
[247] "subtype3" "subtype2" "subtype5" "subtype4" "subtype2" "subtype1"
[253] "subtype2" "subtype3" "subtype4" "subtype5" "subtype4" "subtype3"
[259] "subtype4" "subtype2" "subtype2" "subtype4" "subtype3" "subtype2"
[265] "subtype1" "subtype5" "subtype3" "subtype1" "subtype5" "subtype6"
[271] "subtype6" "subtype5" "subtype5" "subtype4" "subtype4" "subtype1"
[277] "subtype6" "subtype4" "subtype4" "subtype1" "subtype2" "subtype1"
[283] "subtype6" "subtype1" "subtype4" "subtype5" "subtype1" "subtype5"
[289] "subtype5" "subtype2" "subtype1" "subtype4" "subtype1" "subtype5"
[295] "subtype5" "subtype6" "subtype1" "subtype2" "subtype4" "subtype1"
[301] "subtype1" "subtype5" "subtype5" "subtype5" "subtype4" "subtype5"
[307] "subtype4" "subtype3" "subtype3" "subtype3" "subtype1" "subtype4"
[313] "subtype3" "subtype2" "subtype4" "subtype2" "subtype2" "subtype1"
[319] "subtype5" "subtype1" "subtype3" "subtype6" "subtype3" "subtype5"
[325] "subtype2" "subtype6" "subtype1" "subtype1" "subtype2" "subtype3"
[331] "subtype1" "subtype6" "subtype3" "subtype1" "subtype6" "subtype2"
[337] "subtype3" "subtype4" "subtype2" "subtype3" "subtype3" "subtype2"
[343] "subtype2" "subtype6" "subtype2" "subtype3" "subtype2" "subtype2"
[349] "subtype1" "subtype2" "subtype2" "subtype4" "subtype2" "subtype3"
[355] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype6"
[361] "subtype1" "subtype2" "subtype6" "subtype2" "subtype2" "subtype3"
[367] "subtype1" "subtype1" "subtype3" "subtype1" "subtype6" "subtype1"
[373] "subtype4" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[379] "subtype6" "subtype4" "subtype3" "subtype4" "subtype5" "subtype2"
[385] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[391] "subtype3" "subtype5" "subtype3" "subtype3" "subtype6" "subtype2"
[397] "subtype2" "subtype5" "subtype5" "subtype2" "subtype3" "subtype6"
[403] "subtype2" "subtype6" "subtype6" "subtype1" "subtype2" "subtype4"
[409] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype1"
[415] "subtype3" "subtype4" "subtype2" "subtype1" "subtype3" "subtype4"
[421] "subtype3" "subtype4" "subtype6" "subtype3" "subtype4" "subtype3"
[427] "subtype3" "subtype1" "subtype3" "subtype1" "subtype6" "subtype3"
[433] "subtype1" "subtype3" "subtype3" "subtype1" "subtype6" "subtype2"
[439] "subtype1" "subtype1" "subtype5" "subtype2" "subtype5" "subtype5"
[445] "subtype3" "subtype2" "subtype1" "subtype5" "subtype2" "subtype3"
[451] "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype2" "subtype3"
  [7] "subtype3" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
 [13] "subtype1" "subtype5" "subtype3" "subtype3" "subtype4" "subtype3"
 [19] "subtype2" "subtype3" "subtype1" "subtype4" "subtype4" "subtype4"
 [25] "subtype2" "subtype1" "subtype5" "subtype3" "subtype4" "subtype4"
 [31] "subtype2" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
 [37] "subtype3" "subtype4" "subtype4" "subtype1" "subtype6" "subtype4"
 [43] "subtype2" "subtype4" "subtype2" "subtype6" "subtype6" "subtype5"
 [49] "subtype6" "subtype6" "subtype2" "subtype6" "subtype4" "subtype2"
 [55] "subtype2" "subtype2" "subtype1" "subtype6" "subtype5" "subtype6"
 [61] "subtype6" "subtype4" "subtype6" "subtype6" "subtype1" "subtype6"
 [67] "subtype6" "subtype2" "subtype1" "subtype4" "subtype1" "subtype2"
 [73] "subtype6" "subtype6" "subtype2" "subtype1" "subtype6" "subtype6"
 [79] "subtype1" "subtype4" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype1" "subtype6" "subtype2" "subtype6" "subtype1" "subtype1"
 [91] "subtype3" "subtype6" "subtype1" "subtype1" "subtype3" "subtype3"
 [97] "subtype4" "subtype2" "subtype3" "subtype4" "subtype1" "subtype2"
[103] "subtype6" "subtype6" "subtype2" "subtype4" "subtype2" "subtype4"
[109] "subtype5" "subtype2" "subtype1" "subtype2" "subtype2" "subtype6"
[115] "subtype2" "subtype4" "subtype1" "subtype5" "subtype1" "subtype5"
[121] "subtype1" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
[127] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[133] "subtype6" "subtype3" "subtype1" "subtype1" "subtype4" "subtype3"
[139] "subtype4" "subtype4" "subtype1" "subtype2" "subtype3" "subtype6"
[145] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
[151] "subtype4" "subtype4" "subtype1" "subtype1" "subtype3" "subtype3"
[157] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype2" "subtype6" "subtype1"
[169] "subtype1" "subtype3" "subtype4" "subtype1" "subtype4" "subtype4"
[175] "subtype6" "subtype6" "subtype3" "subtype2" "subtype2" "subtype3"
[181] "subtype5" "subtype2" "subtype3" "subtype4" "subtype3" "subtype2"
[187] "subtype5" "subtype3" "subtype1" "subtype1" "subtype1" "subtype4"
[193] "subtype2" "subtype4" "subtype6" "subtype4" "subtype1" "subtype6"
[199] "subtype1" "subtype1" "subtype1" "subtype5" "subtype4" "subtype4"
[205] "subtype1" "subtype2" "subtype4" "subtype4" "subtype1" "subtype3"
[211] "subtype5" "subtype2" "subtype3" "subtype5" "subtype2" "subtype3"
[217] "subtype6" "subtype4" "subtype6" "subtype2" "subtype3" "subtype1"
[223] "subtype1" "subtype5" "subtype6" "subtype2" "subtype5" "subtype2"
[229] "subtype4" "subtype1" "subtype2" "subtype2" "subtype6" "subtype1"
[235] "subtype5" "subtype1" "subtype4" "subtype5" "subtype2" "subtype6"
[241] "subtype5" "subtype5" "subtype5" "subtype6" "subtype4" "subtype4"
[247] "subtype3" "subtype2" "subtype5" "subtype4" "subtype2" "subtype1"
[253] "subtype2" "subtype3" "subtype4" "subtype5" "subtype4" "subtype3"
[259] "subtype4" "subtype2" "subtype2" "subtype4" "subtype3" "subtype2"
[265] "subtype1" "subtype5" "subtype3" "subtype1" "subtype5" "subtype6"
[271] "subtype6" "subtype5" "subtype5" "subtype4" "subtype4" "subtype1"
[277] "subtype6" "subtype4" "subtype4" "subtype1" "subtype2" "subtype1"
[283] "subtype6" "subtype1" "subtype4" "subtype5" "subtype1" "subtype5"
[289] "subtype5" "subtype2" "subtype1" "subtype4" "subtype1" "subtype5"
[295] "subtype5" "subtype6" "subtype1" "subtype2" "subtype4" "subtype1"
[301] "subtype1" "subtype5" "subtype5" "subtype5" "subtype4" "subtype5"
[307] "subtype4" "subtype3" "subtype3" "subtype3" "subtype1" "subtype4"
[313] "subtype3" "subtype2" "subtype4" "subtype2" "subtype2" "subtype1"
[319] "subtype5" "subtype1" "subtype3" "subtype6" "subtype3" "subtype5"
[325] "subtype2" "subtype6" "subtype1" "subtype1" "subtype2" "subtype3"
[331] "subtype1" "subtype6" "subtype3" "subtype1" "subtype6" "subtype2"
[337] "subtype3" "subtype4" "subtype2" "subtype3" "subtype3" "subtype2"
[343] "subtype2" "subtype6" "subtype2" "subtype3" "subtype2" "subtype2"
[349] "subtype1" "subtype2" "subtype2" "subtype4" "subtype2" "subtype3"
[355] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype6"
[361] "subtype1" "subtype2" "subtype6" "subtype2" "subtype2" "subtype3"
[367] "subtype1" "subtype1" "subtype3" "subtype1" "subtype6" "subtype1"
[373] "subtype4" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[379] "subtype6" "subtype4" "subtype3" "subtype4" "subtype5" "subtype2"
[385] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[391] "subtype3" "subtype5" "subtype3" "subtype3" "subtype6" "subtype2"
[397] "subtype2" "subtype5" "subtype5" "subtype2" "subtype3" "subtype6"
[403] "subtype2" "subtype6" "subtype6" "subtype1" "subtype2" "subtype4"
[409] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype1"
[415] "subtype3" "subtype4" "subtype2" "subtype1" "subtype3" "subtype4"
[421] "subtype3" "subtype4" "subtype6" "subtype3" "subtype4" "subtype3"
[427] "subtype3" "subtype1" "subtype3" "subtype1" "subtype6" "subtype3"
[433] "subtype1" "subtype3" "subtype3" "subtype1" "subtype6" "subtype2"
[439] "subtype1" "subtype1" "subtype5" "subtype2" "subtype5" "subtype5"
[445] "subtype3" "subtype2" "subtype1" "subtype5" "subtype2" "subtype3"
[451] "subtype1" "subtype3"
D5V2, continuous
D5V3, binary
          cls
clus        0  1
  subtype1 44 57
  subtype2 29 61
  subtype3 27 59
  subtype4 18 58
  subtype5 18 26
  subtype6 15 42
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   44   57
  subtype2   29   61
  subtype3   27   59
  subtype4   18   58
  subtype5   18   26
  subtype6   15   42
D5V4, continuous
[1] "Remove cluster labels:" "subtype4"              
clus
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
       7        8       10        2        4        3 
 [1] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [7] "subtype3" "subtype2" "subtype6" "subtype1" "subtype1" "subtype6"
[13] "subtype2" "subtype6" "subtype2" "subtype3" "subtype3" "subtype1"
[19] "subtype3" "subtype1" "subtype1" "subtype5" "subtype2" "subtype5"
[25] "subtype5" "subtype3" "subtype2" "subtype1" "subtype5" "subtype2"
[31] "subtype3" "subtype3"
D5V5, binary
          cls
clus        0  1
  subtype1 87 14
  subtype2 71 19
  subtype3 76 10
  subtype4 68  8
  subtype5 44  0
  subtype6 34 23
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   87   14
  subtype2   71   19
  subtype3   76   10
  subtype4   68    8
  subtype5   44    0
  subtype6   34   23
          vv
clus       N0 N1 NX
  subtype1 48  1 52
  subtype2 46  2 42
  subtype3 43  2 41
  subtype4 35  3 38
  subtype5 13  0 31
  subtype6 23  8 26
D5V6, multiclass
D5V7, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      54       11        22       14
  subtype2      42        9        19       20
  subtype3      39       12        25       10
  subtype4      44        7        17        8
  subtype5      33        2         9        0
  subtype6       7        3        24       23
D5V8, multiclass

Clustering(6) Variable = RPPA_CHIERARCHICAL
D6V1, survival
          sevent
clus2        0   1
  subtype1 147  42
  subtype2 103  50
  subtype3  51  59
subtype1 subtype2 subtype3 
     189      153      110 
subtype1 subtype2 subtype3 
      42       50       59 
$subtype1
TCGA-A3-3308 TCGA-A3-3316 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3329 
        0.53        49.08        49.58        48.56        38.99        23.21 
TCGA-A3-3331 TCGA-A3-3349 TCGA-A3-3357 TCGA-A3-3362 TCGA-A3-3365 TCGA-A3-3370 
       48.82        45.53        46.85        51.25        28.67        25.51 
TCGA-A3-3373 TCGA-A3-3376 TCGA-A3-3380 TCGA-A3-3382 TCGA-AK-3444 TCGA-AK-3451 
       10.98        35.18        18.64        18.87        48.36        48.69 
TCGA-B0-4697 TCGA-B0-4698 TCGA-B0-4701 TCGA-B0-4703 TCGA-B0-4710 TCGA-B0-4819 
       18.97         1.38         6.84         5.98         0.16         6.02 
TCGA-B0-4823 TCGA-B0-4837 TCGA-B0-4843 TCGA-B0-5080 TCGA-B0-5088 TCGA-B0-5095 
       14.93        42.48        10.52         7.30        14.24         8.05 
TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5099 TCGA-B0-5100 TCGA-B0-5106 TCGA-B0-5108 
        2.20         4.96        15.95        62.89        52.50         5.33 
TCGA-B0-5110 TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5120 TCGA-B0-5693 TCGA-B0-5702 
       18.41         0.72         2.96         1.81        60.89        38.07 
TCGA-B0-5706 TCGA-B0-5710 TCGA-B0-5711 TCGA-B0-5712 TCGA-B2-3924 TCGA-B2-4098 
       79.36        31.46        83.93        80.15         6.38         1.64 
TCGA-B2-4099 TCGA-B2-5633 TCGA-B2-5636 TCGA-B4-5378 TCGA-B4-5834 TCGA-B8-4146 
        3.62         7.04         8.48         5.75         1.25        16.80 
TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5165 TCGA-B8-5545 TCGA-B8-5549 TCGA-B8-5552 
        0.72         0.13         0.26         8.15         6.38         7.20 
TCGA-B8-5553 TCGA-BP-4165 TCGA-BP-4169 TCGA-BP-4170 TCGA-BP-4174 TCGA-BP-4326 
        0.46        96.85        23.05        77.03        61.78        53.39 
TCGA-BP-4331 TCGA-BP-4332 TCGA-BP-4341 TCGA-BP-4342 TCGA-BP-4344 TCGA-BP-4349 
       80.65        37.25        52.24        74.17        54.77        12.23 
TCGA-BP-4353 TCGA-BP-4355 TCGA-BP-4758 TCGA-BP-4759 TCGA-BP-4760 TCGA-BP-4762 
       12.33        31.33        72.59        76.41        73.94        44.15 
TCGA-BP-4763 TCGA-BP-4765 TCGA-BP-4769 TCGA-BP-4774 TCGA-BP-4775 TCGA-BP-4777 
       41.75        71.80        61.68        61.94        60.56        56.91 
TCGA-BP-4781 TCGA-BP-4784 TCGA-BP-4789 TCGA-BP-4790 TCGA-BP-4797 TCGA-BP-4799 
       68.38        60.95        48.95        36.53        36.39        37.25 
TCGA-BP-4801 TCGA-BP-4803 TCGA-BP-4804 TCGA-BP-4807 TCGA-BP-4959 TCGA-BP-4961 
       36.95         6.67        47.97         6.94        87.45        63.62 
TCGA-BP-4962 TCGA-BP-4964 TCGA-BP-4970 TCGA-BP-4971 TCGA-BP-4972 TCGA-BP-4974 
       58.68        61.22        14.20        48.89        49.35         7.23 
TCGA-BP-4975 TCGA-BP-4976 TCGA-BP-4982 TCGA-BP-4986 TCGA-BP-4987 TCGA-BP-4991 
       47.11        53.65        33.30        25.81        36.95        34.32 
TCGA-BP-4993 TCGA-BP-4995 TCGA-BP-4998 TCGA-BP-4999 TCGA-BP-5006 TCGA-BP-5007 
        5.79        45.07        30.61        41.62        27.62        37.48 
TCGA-BP-5008 TCGA-BP-5009 TCGA-BP-5010 TCGA-BP-5168 TCGA-BP-5177 TCGA-BP-5181 
       35.21        35.90        28.83        48.10         9.63        49.15 
TCGA-BP-5182 TCGA-BP-5184 TCGA-BP-5186 TCGA-BP-5187 TCGA-BP-5192 TCGA-BP-5194 
       38.30        37.25        22.78        13.35        23.47        13.41 
TCGA-BP-5196 TCGA-BP-5198 TCGA-BP-5199 TCGA-BP-5200 TCGA-BP-5202 TCGA-CJ-4634 
       33.47        19.82        44.52        28.96         0.95        59.84 
TCGA-CJ-4642 TCGA-CJ-4868 TCGA-CJ-4870 TCGA-CJ-4871 TCGA-CJ-4872 TCGA-CJ-4878 
       53.16        21.21        49.22        79.63        47.18        71.87 
TCGA-CJ-4886 TCGA-CJ-4889 TCGA-CJ-4890 TCGA-CJ-4893 TCGA-CJ-4894 TCGA-CJ-4899 
       64.14        63.95        68.55        24.62        27.65        50.20 
TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-4902 TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4905 
       41.88        47.67        49.94        51.25        58.92        49.15 
TCGA-CJ-4908 TCGA-CJ-4918 TCGA-CJ-4920 TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5676 
       50.30         3.02         4.57        18.81        63.85        84.66 
TCGA-CJ-5682 TCGA-CJ-5684 TCGA-CJ-6032 TCGA-CW-5583 TCGA-CW-5588 TCGA-CW-5589 
       61.91        73.32        83.77        81.83        66.28        78.15 
TCGA-CW-5590 TCGA-CW-6088 TCGA-CW-6090 TCGA-CW-6093 TCGA-CZ-4856 TCGA-CZ-4859 
       35.34        75.98        75.88        79.89         0.59        58.75 
TCGA-CZ-4865 TCGA-CZ-5453 TCGA-CZ-5454 TCGA-CZ-5457 TCGA-CZ-5459 TCGA-CZ-5461 
        5.42         0.82        23.74        50.86        49.81        10.85 
TCGA-CZ-5463 TCGA-CZ-5465 TCGA-CZ-5982 TCGA-CZ-5988 TCGA-DV-5566 TCGA-DV-5567 
       21.76        45.27        67.13        22.78        45.96        29.88 
TCGA-DV-5568 TCGA-DV-5569 TCGA-DV-5573 TCGA-DV-5574 TCGA-DV-5575 TCGA-DV-5576 
       12.16        11.67        37.15        23.77        33.04        23.90 
TCGA-EU-5904 TCGA-EU-5905 TCGA-EU-5907 
       18.08         3.88         4.14 

$subtype2
TCGA-A3-3306 TCGA-A3-3311 TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3323 TCGA-A3-3326 
       36.82        39.12        49.02        37.15        36.33        37.38 
TCGA-A3-3336 TCGA-A3-3347 TCGA-A3-3351 TCGA-A3-3352 TCGA-A3-3367 TCGA-A3-3372 
       34.29        36.07        29.92        18.44        34.65        24.16 
TCGA-A3-3383 TCGA-A3-3385 TCGA-A3-3387 TCGA-B0-4691 TCGA-B0-4693 TCGA-B0-4712 
       28.31        23.87        20.25         4.57         2.53        43.96 
TCGA-B0-4811 TCGA-B0-4816 TCGA-B0-4818 TCGA-B0-4822 TCGA-B0-4824 TCGA-B0-4836 
       39.32        35.54        14.01        36.53        48.10        40.70 
TCGA-B0-4838 TCGA-B0-4839 TCGA-B0-4845 TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 
       23.93        53.85        65.26        39.42        26.04         2.27 
TCGA-B0-4852 TCGA-B0-5075 TCGA-B0-5077 TCGA-B0-5081 TCGA-B0-5085 TCGA-B0-5092 
       35.47        19.99        42.44         7.66        25.28        15.09 
TCGA-B0-5104 TCGA-B0-5116 TCGA-B0-5399 TCGA-B0-5402 TCGA-B0-5690 TCGA-B0-5692 
       90.44         3.39         6.25         0.33        71.67        48.89 
TCGA-B0-5694 TCGA-B0-5697 TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5701 TCGA-B0-5705 
       15.42        37.32        71.70        79.73        41.95       109.64 
TCGA-B0-5713 TCGA-B0-5812 TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5635 TCGA-B2-5639 
       61.28        76.41         2.96         0.49        10.36         6.28 
TCGA-B2-5641 TCGA-B4-5377 TCGA-B4-5832 TCGA-B4-5835 TCGA-B4-5843 TCGA-B8-4143 
        5.52         9.57         0.23         0.53         0.36        23.31 
TCGA-B8-4153 TCGA-B8-5159 TCGA-B8-5164 TCGA-B8-5546 TCGA-B8-5550 TCGA-B8-5551 
       13.28         4.37         0.76         0.46         6.48         0.49 
TCGA-BP-4158 TCGA-BP-4161 TCGA-BP-4164 TCGA-BP-4173 TCGA-BP-4325 TCGA-BP-4330 
      111.02        90.28        32.61        62.24        97.45        62.07 
TCGA-BP-4343 TCGA-BP-4346 TCGA-BP-4347 TCGA-BP-4351 TCGA-BP-4768 TCGA-BP-4776 
       62.86        49.08        44.94        31.86        13.15        13.48 
TCGA-BP-4963 TCGA-BP-4965 TCGA-BP-4967 TCGA-BP-4968 TCGA-BP-4973 TCGA-BP-4977 
       60.30        61.51         6.71        57.37        45.50        14.93 
TCGA-BP-4981 TCGA-BP-4983 TCGA-BP-4985 TCGA-BP-4992 TCGA-BP-5000 TCGA-BP-5001 
       36.07        46.42        31.27        16.44        18.51        38.70 
TCGA-BP-5173 TCGA-BP-5174 TCGA-BP-5176 TCGA-BP-5183 TCGA-BP-5185 TCGA-BP-5189 
        1.78        74.20        52.27        36.23        37.22        27.02 
TCGA-BP-5190 TCGA-BP-5191 TCGA-BP-5195 TCGA-BP-5201 TCGA-CJ-4635 TCGA-CJ-4640 
       33.21        31.76        24.59        31.27        46.55        65.69 
TCGA-CJ-4869 TCGA-CJ-4873 TCGA-CJ-4874 TCGA-CJ-4875 TCGA-CJ-4876 TCGA-CJ-4881 
       83.97        74.24        75.06        77.36        64.27        66.18 
TCGA-CJ-4884 TCGA-CJ-4887 TCGA-CJ-4895 TCGA-CJ-4897 TCGA-CJ-4907 TCGA-CJ-4912 
       32.65        21.34        39.45        59.44        49.25        54.44 
TCGA-CJ-4916 TCGA-CJ-5672 TCGA-CJ-5677 TCGA-CJ-5678 TCGA-CJ-5679 TCGA-CJ-5683 
       45.11        72.00        25.71        18.84        22.29        62.10 
TCGA-CJ-5686 TCGA-CJ-6027 TCGA-CJ-6030 TCGA-CW-5580 TCGA-CW-5581 TCGA-CW-5584 
       67.00        60.99        75.55        64.57        92.02         5.39 
TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-5591 TCGA-CW-6087 TCGA-CW-6096 TCGA-CW-6097 
       85.78        73.18        74.63         1.35        69.93        18.74 
TCGA-CZ-4853 TCGA-CZ-4862 TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-4866 TCGA-CZ-5451 
       25.45        60.59        55.56        93.04        58.13        54.84 
TCGA-CZ-5452 TCGA-CZ-5455 TCGA-CZ-5456 TCGA-CZ-5458 TCGA-CZ-5464 TCGA-CZ-5466 
       51.16        18.44        51.22        51.22        49.05        22.52 
TCGA-CZ-5467 TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5986 
        2.40         1.94        31.07        49.02        53.56        12.26 
TCGA-CZ-5989 TCGA-DV-5565 TCGA-EU-5906 
       52.57        43.69         6.77 

$subtype3
TCGA-A3-3313 TCGA-A3-3335 TCGA-A3-3346 TCGA-A3-3363 TCGA-A3-3374 TCGA-A3-3378 
       24.16        21.83         4.50        10.49        43.17        20.71 
TCGA-AK-3427 TCGA-AK-3428 TCGA-AK-3434 TCGA-AK-3436 TCGA-AK-3456 TCGA-B0-4688 
       84.36        73.08        68.58        67.17         1.51         3.22 
TCGA-B0-4690 TCGA-B0-4694 TCGA-B0-4696 TCGA-B0-4699 TCGA-B0-4700 TCGA-B0-4706 
        1.41         3.48        28.47         3.58        65.06         0.85 
TCGA-B0-4707 TCGA-B0-4713 TCGA-B0-4714 TCGA-B0-4718 TCGA-B0-4810 TCGA-B0-4813 
       19.69         6.61         0.10         7.04         8.75         0.59 
TCGA-B0-4814 TCGA-B0-4815 TCGA-B0-4817 TCGA-B0-4821 TCGA-B0-4827 TCGA-B0-4828 
        1.55        49.02        27.88        40.41        29.06        10.09 
TCGA-B0-4833 TCGA-B0-4834 TCGA-B0-4841 TCGA-B0-4842 TCGA-B0-4844 TCGA-B0-4848 
       78.41        68.71         4.57        53.79        10.29        29.00 
TCGA-B0-4945 TCGA-B0-5084 TCGA-B0-5094 TCGA-B0-5098 TCGA-B0-5102 TCGA-B0-5107 
       70.52         7.27        10.95        52.08        90.84        30.48 
TCGA-B0-5109 TCGA-B0-5119 TCGA-B0-5121 TCGA-B0-5400 TCGA-B0-5691 TCGA-B0-5695 
       19.27         1.58         6.12        22.26        91.43        34.26 
TCGA-B0-5696 TCGA-B0-5700 TCGA-B0-5703 TCGA-B0-5707 TCGA-B0-5709 TCGA-B2-3923 
       31.04        12.33         8.61        85.22        77.49         5.85 
TCGA-B4-5836 TCGA-B4-5838 TCGA-B4-5844 TCGA-B8-4620 TCGA-B8-4621 TCGA-B8-4622 
        4.64         5.46         0.23         7.43         7.07         5.95 
TCGA-B8-5158 TCGA-BP-4327 TCGA-BP-4329 TCGA-BP-4334 TCGA-BP-4335 TCGA-BP-4337 
        2.96         3.55        27.78        21.21        15.12         0.07 
TCGA-BP-4338 TCGA-BP-4345 TCGA-BP-4352 TCGA-BP-4354 TCGA-BP-4756 TCGA-BP-4761 
       90.28        49.84        11.31        33.99        12.30         5.98 
TCGA-BP-4766 TCGA-BP-4770 TCGA-BP-4771 TCGA-BP-4787 TCGA-BP-4798 TCGA-BP-4960 
       48.03        10.82         5.29        15.75        10.98        71.41 
TCGA-BP-4969 TCGA-BP-4988 TCGA-BP-4989 TCGA-BP-4994 TCGA-BP-5004 TCGA-BP-5169 
       58.98        27.19         3.85        42.97        37.02         6.31 
TCGA-BP-5170 TCGA-BP-5175 TCGA-BP-5178 TCGA-BP-5180 TCGA-CJ-4638 TCGA-CJ-4882 
       79.27        30.64        62.86        62.20        14.17        61.91 
TCGA-CJ-4885 TCGA-CJ-4888 TCGA-CJ-4891 TCGA-CJ-4892 TCGA-CJ-4913 TCGA-CJ-5675 
       69.86        51.48        26.89        49.97        38.56        79.86 
TCGA-CJ-5680 TCGA-CJ-5681 TCGA-CJ-5689 TCGA-CJ-6028 TCGA-CJ-6031 TCGA-CJ-6033 
       25.25        18.12         0.20        53.42        62.63         7.36 
TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4858 TCGA-CZ-4860 TCGA-CZ-4861 TCGA-CZ-5460 
       46.16        47.08        63.88         6.74        14.63        47.01 
TCGA-CZ-5462 TCGA-CZ-5987 
       10.22        14.30 

subtype1 subtype2 subtype3 
    0.13     0.23     0.07 
subtype1 subtype2 subtype3 
   96.85   111.02    91.43 
subtype1 subtype2 subtype3 
   36.95    36.82    21.52 
[1] "0.1 - 96.8 (37.0)"  "0.2 - 111.0 (36.8)" "0.1 - 91.4 (21.5)" 
  [1] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
  [7] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [19] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [25] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [37] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [49] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [55] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [73] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [97] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[103] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[115] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[121] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[127] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[139] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[151] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[157] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[163] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[169] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[175] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[181] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[187] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[193] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[199] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[205] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[211] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[217] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[223] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[229] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[235] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[241] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[253] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[259] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[265] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[271] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[277] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[283] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[295] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[301] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[307] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[319] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[325] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[331] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[337] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[343] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[349] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[355] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[361] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[367] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[373] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[379] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[385] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[391] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[397] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[403] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[409] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[415] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[421] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[427] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[433] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[439] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[445] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[451] "subtype2" "subtype1"
  [1] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
  [7] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [19] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [25] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [37] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [49] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [55] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [73] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [97] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[103] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[115] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[121] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[127] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[139] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[151] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[157] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[163] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[169] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[175] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[181] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[187] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[193] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[199] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[205] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[211] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[217] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[223] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[229] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[235] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[241] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[253] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[259] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[265] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[271] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[277] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[283] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[295] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[301] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[307] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[319] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[325] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[331] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[337] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[343] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[349] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[355] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[361] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[367] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[373] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[379] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[385] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[391] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[397] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[403] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[409] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[415] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[421] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[427] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[433] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[439] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[445] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[451] "subtype2" "subtype1"
  [1] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
  [7] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [19] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [25] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [37] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [49] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [55] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [73] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [97] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[103] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[115] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[121] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[127] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[139] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[151] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[157] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[163] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[169] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[175] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[181] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[187] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[193] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[199] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[205] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[211] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[217] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[223] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[229] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[235] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[241] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[253] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[259] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[265] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[271] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[277] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[283] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[295] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[301] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[307] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[319] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[325] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[331] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[337] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[343] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[349] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[355] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[361] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[367] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[373] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[379] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[385] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[391] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[397] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[403] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[409] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[415] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[421] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[427] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[433] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[439] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[445] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[451] "subtype2" "subtype1"
D6V2, continuous
D6V3, binary
          cls
clus         0   1
  subtype1  68 121
  subtype2  47 106
  subtype3  36  76
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   68  121
  subtype2   47  106
  subtype3   36   76
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       68       47       36
  MALE        121      106       76
D6V4, continuous
D6V5, binary
          cls
clus         0   1
  subtype1 170  19
  subtype2 131  22
  subtype3  79  33
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  170   19
  subtype2  131   22
  subtype3   79   33
    clus
vv   subtype1 subtype2 subtype3
  M0      170      131       79
  M1       19       22       33
          vv
clus        N0  N1  NX
  subtype1  72   4 113
  subtype2  76   4  73
  subtype3  60   8  44
D6V6, multiclass
D6V7, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1     118       16        36       19
  subtype2      65       17        48       23
  subtype3      36       11        32       33
D6V8, multiclass

Clustering(7) Variable = MRNASEQ_CNMF
D7V1, survival
          sevent
clus2        0   1
  subtype1 155  44
  subtype2  96  83
  subtype3  72  28
subtype1 subtype2 subtype3 
     199      179      100 
subtype1 subtype2 subtype3 
      44       83       28 
$subtype1
TCGA-A3-3306 TCGA-A3-3307 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3325 
       36.82        47.21        49.58        48.56        38.99        24.69 
TCGA-A3-3326 TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3343 TCGA-A3-3351 TCGA-A3-3352 
       37.38        23.21        48.82        31.04        29.92        18.44 
TCGA-A3-3358 TCGA-A3-3359 TCGA-A3-3367 TCGA-A3-3370 TCGA-A3-3372 TCGA-A3-3373 
       42.97        42.28        34.65        25.51        24.16        10.98 
TCGA-A3-3380 TCGA-A3-3385 TCGA-AK-3429 TCGA-AK-3434 TCGA-AK-3444 TCGA-AK-3450 
       18.64        23.87        66.31        68.58        48.36        49.28 
TCGA-AK-3454 TCGA-AK-3455 TCGA-AK-3458 TCGA-AK-3460 TCGA-B0-4693 TCGA-B0-4701 
       28.70        22.45        38.40        31.27         2.53         6.84 
TCGA-B0-4714 TCGA-B0-4814 TCGA-B0-4818 TCGA-B0-4824 TCGA-B0-4828 TCGA-B0-4833 
        0.10         1.55        14.01        48.10        10.09        78.41 
TCGA-B0-4838 TCGA-B0-4839 TCGA-B0-4845 TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 
       23.93        53.85        65.26        39.42        26.04         2.27 
TCGA-B0-4852 TCGA-B0-4945 TCGA-B0-5077 TCGA-B0-5085 TCGA-B0-5088 TCGA-B0-5099 
       35.47        70.52        42.44        25.28        14.24        15.95 
TCGA-B0-5102 TCGA-B0-5104 TCGA-B0-5110 TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5119 
       90.84        90.44        18.41         0.72         2.96         1.58 
TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5402 TCGA-B0-5690 TCGA-B0-5692 TCGA-B0-5693 
        6.12         6.25         0.33        71.67        48.89        60.89 
TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5700 TCGA-B0-5703 
       34.26        31.04        71.70        79.73        12.33         8.61 
TCGA-B0-5705 TCGA-B0-5710 TCGA-B0-5711 TCGA-B0-5712 TCGA-B0-5713 TCGA-B2-3924 
      109.64        31.46        83.93        80.15        61.28         6.38 
TCGA-B2-4099 TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5635 TCGA-B2-5639 TCGA-B4-5377 
        3.62         2.96         0.49        10.36         6.28         9.57 
TCGA-B4-5834 TCGA-B4-5836 TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4146 TCGA-B8-4148 
        1.25         4.64         0.36         0.23        16.80        12.46 
TCGA-B8-4151 TCGA-B8-4153 TCGA-B8-4154 TCGA-B8-4622 TCGA-B8-5159 TCGA-B8-5164 
        9.17        13.28         8.38         5.95         4.37         0.76 
TCGA-B8-5549 TCGA-B8-5553 TCGA-BP-4158 TCGA-BP-4160 TCGA-BP-4162 TCGA-BP-4164 
        6.38         0.46       111.02        94.72       101.06        32.61 
TCGA-BP-4165 TCGA-BP-4170 TCGA-BP-4325 TCGA-BP-4327 TCGA-BP-4330 TCGA-BP-4335 
       96.85        77.03        97.45         3.55        62.07        15.12 
TCGA-BP-4340 TCGA-BP-4341 TCGA-BP-4346 TCGA-BP-4347 TCGA-BP-4349 TCGA-BP-4756 
       18.48        52.24        49.08        44.94        12.23        12.30 
TCGA-BP-4758 TCGA-BP-4765 TCGA-BP-4766 TCGA-BP-4768 TCGA-BP-4774 TCGA-BP-4775 
       72.59        71.80        48.03        13.15        61.94        60.56 
TCGA-BP-4777 TCGA-BP-4782 TCGA-BP-4807 TCGA-BP-4961 TCGA-BP-4964 TCGA-BP-4965 
       56.91        11.64         6.94        63.62        61.22        61.51 
TCGA-BP-4968 TCGA-BP-4969 TCGA-BP-4973 TCGA-BP-4974 TCGA-BP-4975 TCGA-BP-4976 
       57.37        58.98        45.50         7.23        47.11        53.65 
TCGA-BP-4981 TCGA-BP-4982 TCGA-BP-4987 TCGA-BP-4991 TCGA-BP-4993 TCGA-BP-4999 
       36.07        33.30        36.95        34.32         5.79        41.62 
TCGA-BP-5001 TCGA-BP-5004 TCGA-BP-5006 TCGA-BP-5007 TCGA-BP-5168 TCGA-BP-5173 
       38.70        37.02        27.62        37.48        48.10         1.78 
TCGA-BP-5174 TCGA-BP-5176 TCGA-BP-5181 TCGA-BP-5183 TCGA-BP-5184 TCGA-BP-5186 
       74.20        52.27        49.15        36.23        37.25        22.78 
TCGA-BP-5190 TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5200 TCGA-BP-5201 TCGA-BP-5202 
       33.21        23.47        13.41        28.96        31.27         0.95 
TCGA-CJ-4634 TCGA-CJ-4639 TCGA-CJ-4643 TCGA-CJ-4644 TCGA-CJ-4874 TCGA-CJ-4875 
       59.84        75.88        58.92        11.05        75.06        77.36 
TCGA-CJ-4876 TCGA-CJ-4878 TCGA-CJ-4885 TCGA-CJ-4886 TCGA-CJ-4887 TCGA-CJ-4892 
       64.27        71.87        69.86        64.14        21.34        49.97 
TCGA-CJ-4893 TCGA-CJ-4894 TCGA-CJ-4897 TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4908 
       24.62        27.65        59.44        51.25        58.92        50.30 
TCGA-CJ-4916 TCGA-CJ-5672 TCGA-CJ-5675 TCGA-CJ-5684 TCGA-CJ-6032 TCGA-CW-5580 
       45.11        72.00        79.86        73.32        83.77        64.57 
TCGA-CW-5581 TCGA-CW-5584 TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-6088 TCGA-CW-6093 
       92.02         5.39        85.78        73.18        75.98        79.89 
TCGA-CZ-4853 TCGA-CZ-4856 TCGA-CZ-4859 TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-5453 
       25.45         0.59        58.75        55.56        93.04         0.82 
TCGA-CZ-5455 TCGA-CZ-5457 TCGA-CZ-5458 TCGA-CZ-5460 TCGA-CZ-5463 TCGA-CZ-5465 
       18.44        50.86        51.22        47.01        21.76        45.27 
TCGA-CZ-5982 TCGA-CZ-5986 TCGA-CZ-5989 TCGA-DV-5566 TCGA-DV-5575 TCGA-EU-5904 
       67.13        12.26        52.57        45.96        33.04        18.08 
TCGA-EU-5906 
        6.77 

$subtype2
TCGA-A3-3308 TCGA-A3-3311 TCGA-A3-3316 TCGA-A3-3319 TCGA-A3-3323 TCGA-A3-3335 
        0.53        39.12        49.08        37.15        36.33        21.83 
TCGA-A3-3347 TCGA-A3-3357 TCGA-A3-3378 TCGA-A3-3382 TCGA-A3-3387 TCGA-AK-3426 
       36.07        46.85        20.71        18.87        20.25        29.06 
TCGA-AK-3436 TCGA-AK-3445 TCGA-AK-3451 TCGA-B0-4690 TCGA-B0-4691 TCGA-B0-4694 
       67.17        42.05        48.69         1.41         4.57         3.48 
TCGA-B0-4697 TCGA-B0-4698 TCGA-B0-4700 TCGA-B0-4707 TCGA-B0-4712 TCGA-B0-4713 
       18.97         1.38        65.06        19.69        43.96         6.61 
TCGA-B0-4718 TCGA-B0-4810 TCGA-B0-4813 TCGA-B0-4815 TCGA-B0-4816 TCGA-B0-4817 
        7.04         8.75         0.59        49.02        35.54        27.88 
TCGA-B0-4819 TCGA-B0-4821 TCGA-B0-4827 TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-4842 
        6.02        40.41        29.06        40.70        42.48        53.79 
TCGA-B0-4843 TCGA-B0-4844 TCGA-B0-4848 TCGA-B0-5075 TCGA-B0-5081 TCGA-B0-5084 
       10.52        10.29        29.00        19.99         7.66         7.27 
TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5095 TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5098 
       15.09        10.95         8.05         2.20         4.96        52.08 
TCGA-B0-5106 TCGA-B0-5107 TCGA-B0-5108 TCGA-B0-5116 TCGA-B0-5400 TCGA-B0-5694 
       52.50        30.48         5.33         3.39        22.26        15.42 
TCGA-B0-5701 TCGA-B0-5706 TCGA-B2-4098 TCGA-B2-5633 TCGA-B2-5641 TCGA-B4-5832 
       41.95        79.36         1.64         7.04         5.52         0.23 
TCGA-B4-5835 TCGA-B8-4143 TCGA-B8-4620 TCGA-B8-4621 TCGA-B8-5158 TCGA-B8-5162 
        0.53        23.31         7.43         7.07         2.96         0.72 
TCGA-B8-5163 TCGA-B8-5550 TCGA-B8-5551 TCGA-BP-4161 TCGA-BP-4167 TCGA-BP-4173 
        0.13         6.48         0.49        90.28        89.36        62.24 
TCGA-BP-4174 TCGA-BP-4176 TCGA-BP-4326 TCGA-BP-4338 TCGA-BP-4342 TCGA-BP-4343 
       61.78        64.27        53.39        90.28        74.17        62.86 
TCGA-BP-4351 TCGA-BP-4352 TCGA-BP-4353 TCGA-BP-4354 TCGA-BP-4761 TCGA-BP-4771 
       31.86        11.31        12.33        33.99         5.98         5.29 
TCGA-BP-4781 TCGA-BP-4787 TCGA-BP-4797 TCGA-BP-4798 TCGA-BP-4799 TCGA-BP-4803 
       68.38        15.75        36.39        10.98        37.25         6.67 
TCGA-BP-4804 TCGA-BP-4959 TCGA-BP-4960 TCGA-BP-4962 TCGA-BP-4963 TCGA-BP-4967 
       47.97        87.45        71.41        58.68        60.30         6.71 
TCGA-BP-4971 TCGA-BP-4977 TCGA-BP-4983 TCGA-BP-4985 TCGA-BP-4986 TCGA-BP-4988 
       48.89        14.93        46.42        31.27        25.81        27.19 
TCGA-BP-4989 TCGA-BP-4992 TCGA-BP-5000 TCGA-BP-5009 TCGA-BP-5010 TCGA-BP-5169 
        3.85        16.44        18.51        35.90        28.83         6.31 
TCGA-BP-5170 TCGA-BP-5175 TCGA-BP-5178 TCGA-BP-5180 TCGA-BP-5189 TCGA-BP-5191 
       79.27        30.64        62.86        62.20        27.02        31.76 
TCGA-BP-5195 TCGA-BP-5196 TCGA-BP-5198 TCGA-CJ-4635 TCGA-CJ-4636 TCGA-CJ-4637 
       24.59        33.47        19.82        46.55        63.25        73.22 
TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4641 TCGA-CJ-4868 TCGA-CJ-4869 TCGA-CJ-4871 
       14.17        65.69        54.61        21.21        83.97        79.63 
TCGA-CJ-4872 TCGA-CJ-4873 TCGA-CJ-4881 TCGA-CJ-4882 TCGA-CJ-4884 TCGA-CJ-4888 
       47.18        74.24        66.18        61.91        32.65        51.48 
TCGA-CJ-4890 TCGA-CJ-4891 TCGA-CJ-4895 TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-4902 
       68.55        26.89        39.45        41.88        47.67        49.94 
TCGA-CJ-4912 TCGA-CJ-4920 TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5676 TCGA-CJ-5677 
       54.44         4.57        18.81        63.85        84.66        25.71 
TCGA-CJ-5678 TCGA-CJ-5679 TCGA-CJ-5686 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6030 
       18.84        22.29        67.00        60.99        53.42        75.55 
TCGA-CJ-6031 TCGA-CJ-6033 TCGA-CW-5588 TCGA-CW-5590 TCGA-CW-6087 TCGA-CW-6090 
       62.63         7.36        66.28        35.34         1.35        75.88 
TCGA-CW-6097 TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4858 TCGA-CZ-4860 TCGA-CZ-4861 
       18.74        46.16        47.08        63.88         6.74        14.63 
TCGA-CZ-4862 TCGA-CZ-4865 TCGA-CZ-4866 TCGA-CZ-5452 TCGA-CZ-5454 TCGA-CZ-5456 
       60.59         5.42        58.13        51.16        23.74        51.22 
TCGA-CZ-5461 TCGA-CZ-5462 TCGA-CZ-5464 TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5984 
       10.85        10.22        49.05         1.94        31.07        49.02 
TCGA-CZ-5985 TCGA-CZ-5987 TCGA-CZ-5988 TCGA-DV-5568 TCGA-EU-5905 
       53.56        14.30        22.78        12.16         3.88 

$subtype3
TCGA-A3-3313 TCGA-A3-3317 TCGA-A3-3328 TCGA-A3-3349 TCGA-A3-3362 TCGA-A3-3363 
       24.16        49.02        25.81        45.53        51.25        10.49 
TCGA-A3-3365 TCGA-A3-3374 TCGA-A3-3376 TCGA-AK-3427 TCGA-AK-3428 TCGA-AK-3431 
       28.67        43.17        35.18        84.36        73.08        60.92 
TCGA-AK-3433 TCGA-AK-3440 TCGA-AK-3443 TCGA-AK-3453 TCGA-AK-3456 TCGA-AK-3461 
       72.07        57.34        46.78        39.12         1.51        28.04 
TCGA-AK-3465 TCGA-AS-3777 TCGA-B0-4688 TCGA-B0-4696 TCGA-B0-4699 TCGA-B0-4703 
       12.13         1.32         3.22        28.47         3.58         5.98 
TCGA-B0-4706 TCGA-B0-4811 TCGA-B0-4823 TCGA-B0-4834 TCGA-B0-4841 TCGA-B0-5080 
        0.85        39.32        14.93        68.71         4.57         7.30 
TCGA-B0-5083 TCGA-B0-5100 TCGA-B0-5109 TCGA-B0-5120 TCGA-B0-5691 TCGA-B0-5697 
       15.29        62.89        19.27         1.81        91.43        37.32 
TCGA-B0-5709 TCGA-B0-5812 TCGA-B2-3923 TCGA-B2-5636 TCGA-B4-5378 TCGA-B4-5838 
       77.49        76.41         5.85         8.48         5.75         5.46 
TCGA-B8-4619 TCGA-B8-5165 TCGA-B8-5545 TCGA-B8-5546 TCGA-B8-5552 TCGA-BP-4159 
        0.62         0.26         8.15         0.46         7.20        85.48 
TCGA-BP-4163 TCGA-BP-4166 TCGA-BP-4169 TCGA-BP-4177 TCGA-BP-4329 TCGA-BP-4332 
       93.34         0.43        23.05        54.90        27.78        37.25 
TCGA-BP-4334 TCGA-BP-4337 TCGA-BP-4344 TCGA-BP-4345 TCGA-BP-4355 TCGA-BP-4759 
       21.21         0.07        54.77        49.84        31.33        76.41 
TCGA-BP-4760 TCGA-BP-4762 TCGA-BP-4763 TCGA-BP-4769 TCGA-BP-4770 TCGA-BP-4784 
       73.94        44.15        41.75        61.68        10.82        60.95 
TCGA-BP-4789 TCGA-BP-4790 TCGA-BP-4795 TCGA-BP-4801 TCGA-BP-4970 TCGA-BP-4972 
       48.95        36.53        20.38        36.95        14.20        49.35 
TCGA-BP-4994 TCGA-BP-4995 TCGA-BP-4998 TCGA-BP-5008 TCGA-BP-5177 TCGA-BP-5182 
       42.97        45.07        30.61        35.21         9.63        38.30 
TCGA-BP-5187 TCGA-BP-5199 TCGA-CJ-4889 TCGA-CJ-4899 TCGA-CJ-4905 TCGA-CJ-4907 
       13.35        44.52        63.95        50.20        49.15        49.25 
TCGA-CJ-4918 TCGA-CJ-5680 TCGA-CJ-5681 TCGA-CJ-5682 TCGA-CJ-5683 TCGA-CJ-5689 
        3.02        25.25        18.12        61.91        62.10         0.20 
TCGA-CW-5583 TCGA-CW-5589 TCGA-CW-5591 TCGA-CZ-5467 TCGA-DV-5565 TCGA-DV-5567 
       81.83        78.15        74.63         2.40        43.69        29.88 
TCGA-DV-5569 TCGA-DV-5573 TCGA-DV-5574 TCGA-DV-5576 
       11.67        37.15        23.77        23.90 

subtype1 subtype2 subtype3 
    0.10     0.13     0.07 
subtype1 subtype2 subtype3 
  111.02    90.28    93.34 
subtype1 subtype2 subtype3 
  36.950   30.640   35.195 
[1] "0.1 - 111.0 (37.0)" "0.1 - 90.3 (30.6)"  "0.1 - 93.3 (35.2)" 
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [55] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [67] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [97] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[103] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[115] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[133] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[139] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[145] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[157] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[163] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[169] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[175] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[181] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[187] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[193] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[199] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[205] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[211] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[217] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[229] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[235] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[241] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[247] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[253] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[259] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[265] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[271] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[277] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[283] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[289] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[295] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[301] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[307] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[313] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[319] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[325] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[331] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[337] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[343] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[349] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[355] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[367] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[373] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[379] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[385] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[391] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[397] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[403] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[409] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[415] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[421] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[427] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[433] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[439] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[445] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[451] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[457] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[463] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[469] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[475] "subtype3" "subtype1" "subtype2" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [55] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [67] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [97] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[103] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[115] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[133] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[139] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[145] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[157] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[163] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[169] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[175] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[181] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[187] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[193] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[199] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[205] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[211] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[217] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[229] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[235] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[241] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[247] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[253] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[259] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[265] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[271] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[277] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[283] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[289] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[295] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[301] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[307] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[313] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[319] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[325] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[331] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[337] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[343] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[349] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[355] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[367] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[373] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[379] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[385] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[391] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[397] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[403] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[409] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[415] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[421] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[427] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[433] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[439] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[445] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[451] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[457] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[463] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[469] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[475] "subtype3" "subtype1" "subtype2" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [55] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [67] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [97] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[103] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[115] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[133] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[139] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[145] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[157] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[163] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[169] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[175] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[181] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[187] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[193] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[199] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[205] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[211] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[217] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[229] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[235] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[241] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[247] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[253] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[259] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[265] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[271] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[277] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[283] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[289] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[295] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[301] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[307] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[313] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[319] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[325] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[331] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[337] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[343] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[349] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[355] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[367] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[373] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[379] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[385] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[391] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[397] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[403] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[409] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[415] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[421] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[427] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[433] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[439] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[445] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[451] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[457] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[463] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[469] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[475] "subtype3" "subtype1" "subtype2" "subtype1"
D7V2, continuous
D7V3, binary
          cls
clus         0   1
  subtype1  91 108
  subtype2  44 136
  subtype3  32  69
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   91  108
  subtype2   44  136
  subtype3   32   69
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       91       44       32
  MALE        108      136       69
D7V4, continuous
D7V5, binary
          cls
clus         0   1
  subtype1 176  23
  subtype2 136  44
  subtype3  91  10
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  176   23
  subtype2  136   44
  subtype3   91   10
    clus
vv   subtype1 subtype2 subtype3
  M0      176      136       91
  M1       23       44       10
          vv
clus        N0  N1  NX
  subtype1  96   2 101
  subtype2  85  12  83
  subtype3  47   3  51
D7V6, multiclass
D7V7, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1     118       19        39       23
  subtype2      55       20        61       44
  subtype3      60       10        20       11
D7V8, multiclass

Clustering(8) Variable = MRNASEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2        0   1
  subtype1  58  14
  subtype2 166  48
  subtype3  99  93
subtype1 subtype2 subtype3 
      72      214      192 
subtype1 subtype2 subtype3 
      14       48       93 
$subtype1
TCGA-A3-3313 TCGA-A3-3328 TCGA-A3-3362 TCGA-A3-3363 TCGA-A3-3374 TCGA-AK-3427 
       24.16        25.81        51.25        10.49        43.17        84.36 
TCGA-AK-3433 TCGA-AK-3440 TCGA-AK-3443 TCGA-AK-3453 TCGA-AK-3456 TCGA-AK-3465 
       72.07        57.34        46.78        39.12         1.51        12.13 
TCGA-AS-3777 TCGA-B0-4699 TCGA-B0-4823 TCGA-B0-4834 TCGA-B0-5083 TCGA-B0-5100 
        1.32         3.58        14.93        68.71        15.29        62.89 
TCGA-B0-5120 TCGA-B0-5691 TCGA-B0-5695 TCGA-B0-5697 TCGA-B0-5700 TCGA-B0-5812 
        1.81        91.43        34.26        37.32        12.33        76.41 
TCGA-B2-3923 TCGA-B2-4098 TCGA-B2-5636 TCGA-B2-5639 TCGA-B4-5378 TCGA-B4-5835 
        5.85         1.64         8.48         6.28         5.75         0.53 
TCGA-B8-4619 TCGA-B8-4621 TCGA-B8-5165 TCGA-B8-5546 TCGA-B8-5552 TCGA-BP-4166 
        0.62         7.07         0.26         0.46         7.20         0.43 
TCGA-BP-4177 TCGA-BP-4334 TCGA-BP-4756 TCGA-BP-4760 TCGA-BP-4762 TCGA-BP-4769 
       54.90        21.21        12.30        73.94        44.15        61.68 
TCGA-BP-4784 TCGA-BP-4790 TCGA-BP-4795 TCGA-BP-4801 TCGA-BP-4807 TCGA-BP-4970 
       60.95        36.53        20.38        36.95         6.94        14.20 
TCGA-BP-4972 TCGA-BP-4994 TCGA-BP-4995 TCGA-BP-5008 TCGA-BP-5182 TCGA-BP-5187 
       49.35        42.97        45.07        35.21        38.30        13.35 
TCGA-CJ-4889 TCGA-CJ-4907 TCGA-CJ-5681 TCGA-CJ-5683 TCGA-CJ-5684 TCGA-CJ-5689 
       63.95        49.25        18.12        62.10        73.32         0.20 
TCGA-CW-5581 TCGA-CW-5584 TCGA-CW-5589 TCGA-CW-5591 TCGA-CZ-5467 TCGA-DV-5565 
       92.02         5.39        78.15        74.63         2.40        43.69 
TCGA-DV-5566 TCGA-DV-5567 TCGA-DV-5569 TCGA-DV-5573 TCGA-DV-5574 TCGA-DV-5576 
       45.96        29.88        11.67        37.15        23.77        23.90 

$subtype2
TCGA-A3-3306 TCGA-A3-3307 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3325 
       36.82        47.21        49.58        48.56        38.99        24.69 
TCGA-A3-3326 TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3343 TCGA-A3-3349 TCGA-A3-3351 
       37.38        23.21        48.82        31.04        45.53        29.92 
TCGA-A3-3352 TCGA-A3-3358 TCGA-A3-3359 TCGA-A3-3365 TCGA-A3-3367 TCGA-A3-3370 
       18.44        42.97        42.28        28.67        34.65        25.51 
TCGA-A3-3372 TCGA-A3-3373 TCGA-A3-3376 TCGA-A3-3380 TCGA-A3-3385 TCGA-AK-3428 
       24.16        10.98        35.18        18.64        23.87        73.08 
TCGA-AK-3429 TCGA-AK-3434 TCGA-AK-3444 TCGA-AK-3450 TCGA-AK-3454 TCGA-AK-3455 
       66.31        68.58        48.36        49.28        28.70        22.45 
TCGA-AK-3458 TCGA-AK-3460 TCGA-AK-3461 TCGA-B0-4693 TCGA-B0-4701 TCGA-B0-4706 
       38.40        31.27        28.04         2.53         6.84         0.85 
TCGA-B0-4714 TCGA-B0-4718 TCGA-B0-4811 TCGA-B0-4814 TCGA-B0-4818 TCGA-B0-4824 
        0.10         7.04        39.32         1.55        14.01        48.10 
TCGA-B0-4828 TCGA-B0-4833 TCGA-B0-4838 TCGA-B0-4839 TCGA-B0-4841 TCGA-B0-4845 
       10.09        78.41        23.93        53.85         4.57        65.26 
TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 TCGA-B0-4852 TCGA-B0-4945 TCGA-B0-5077 
       39.42        26.04         2.27        35.47        70.52        42.44 
TCGA-B0-5085 TCGA-B0-5099 TCGA-B0-5102 TCGA-B0-5104 TCGA-B0-5106 TCGA-B0-5110 
       25.28        15.95        90.84        90.44        52.50        18.41 
TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5119 TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5690 
        0.72         2.96         1.58         6.12         6.25        71.67 
TCGA-B0-5692 TCGA-B0-5693 TCGA-B0-5696 TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5703 
       48.89        60.89        31.04        71.70        79.73         8.61 
TCGA-B0-5705 TCGA-B0-5710 TCGA-B0-5711 TCGA-B0-5712 TCGA-B0-5713 TCGA-B2-3924 
      109.64        31.46        83.93        80.15        61.28         6.38 
TCGA-B2-4099 TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5635 TCGA-B4-5377 TCGA-B4-5834 
        3.62         2.96         0.49        10.36         9.57         1.25 
TCGA-B4-5836 TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4146 TCGA-B8-4148 TCGA-B8-4151 
        4.64         0.36         0.23        16.80        12.46         9.17 
TCGA-B8-4153 TCGA-B8-4154 TCGA-B8-4622 TCGA-B8-5159 TCGA-B8-5164 TCGA-B8-5553 
       13.28         8.38         5.95         4.37         0.76         0.46 
TCGA-BP-4158 TCGA-BP-4159 TCGA-BP-4160 TCGA-BP-4161 TCGA-BP-4162 TCGA-BP-4164 
      111.02        85.48        94.72        90.28       101.06        32.61 
TCGA-BP-4165 TCGA-BP-4170 TCGA-BP-4173 TCGA-BP-4174 TCGA-BP-4325 TCGA-BP-4327 
       96.85        77.03        62.24        61.78        97.45         3.55 
TCGA-BP-4330 TCGA-BP-4332 TCGA-BP-4335 TCGA-BP-4340 TCGA-BP-4341 TCGA-BP-4344 
       62.07        37.25        15.12        18.48        52.24        54.77 
TCGA-BP-4346 TCGA-BP-4347 TCGA-BP-4349 TCGA-BP-4351 TCGA-BP-4355 TCGA-BP-4758 
       49.08        44.94        12.23        31.86        31.33        72.59 
TCGA-BP-4765 TCGA-BP-4766 TCGA-BP-4768 TCGA-BP-4774 TCGA-BP-4775 TCGA-BP-4777 
       71.80        48.03        13.15        61.94        60.56        56.91 
TCGA-BP-4789 TCGA-BP-4961 TCGA-BP-4963 TCGA-BP-4965 TCGA-BP-4968 TCGA-BP-4969 
       48.95        63.62        60.30        61.51        57.37        58.98 
TCGA-BP-4973 TCGA-BP-4974 TCGA-BP-4975 TCGA-BP-4976 TCGA-BP-4977 TCGA-BP-4981 
       45.50         7.23        47.11        53.65        14.93        36.07 
TCGA-BP-4982 TCGA-BP-4987 TCGA-BP-4989 TCGA-BP-4991 TCGA-BP-4992 TCGA-BP-4993 
       33.30        36.95         3.85        34.32        16.44         5.79 
TCGA-BP-4999 TCGA-BP-5000 TCGA-BP-5001 TCGA-BP-5004 TCGA-BP-5006 TCGA-BP-5007 
       41.62        18.51        38.70        37.02        27.62        37.48 
TCGA-BP-5168 TCGA-BP-5173 TCGA-BP-5176 TCGA-BP-5177 TCGA-BP-5181 TCGA-BP-5183 
       48.10         1.78        52.27         9.63        49.15        36.23 
TCGA-BP-5184 TCGA-BP-5186 TCGA-BP-5190 TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5200 
       37.25        22.78        33.21        23.47        13.41        28.96 
TCGA-BP-5201 TCGA-BP-5202 TCGA-CJ-4634 TCGA-CJ-4639 TCGA-CJ-4640 TCGA-CJ-4643 
       31.27         0.95        59.84        75.88        65.69        58.92 
TCGA-CJ-4644 TCGA-CJ-4874 TCGA-CJ-4875 TCGA-CJ-4876 TCGA-CJ-4878 TCGA-CJ-4885 
       11.05        75.06        77.36        64.27        71.87        69.86 
TCGA-CJ-4886 TCGA-CJ-4887 TCGA-CJ-4892 TCGA-CJ-4893 TCGA-CJ-4894 TCGA-CJ-4897 
       64.14        21.34        49.97        24.62        27.65        59.44 
TCGA-CJ-4899 TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4905 TCGA-CJ-4908 TCGA-CJ-4916 
       50.20        51.25        58.92        49.15        50.30        45.11 
TCGA-CJ-5672 TCGA-CJ-5675 TCGA-CJ-5678 TCGA-CJ-5686 TCGA-CJ-6032 TCGA-CW-5583 
       72.00        79.86        18.84        67.00        83.77        81.83 
TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-6088 TCGA-CW-6093 TCGA-CZ-4853 TCGA-CZ-4856 
       85.78        73.18        75.98        79.89        25.45         0.59 
TCGA-CZ-4859 TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-5453 TCGA-CZ-5455 TCGA-CZ-5457 
       58.75        55.56        93.04         0.82        18.44        50.86 
TCGA-CZ-5460 TCGA-CZ-5463 TCGA-CZ-5465 TCGA-CZ-5982 TCGA-CZ-5986 TCGA-CZ-5989 
       47.01        21.76        45.27        67.13        12.26        52.57 
TCGA-DV-5568 TCGA-DV-5575 TCGA-EU-5904 TCGA-EU-5906 
       12.16        33.04        18.08         6.77 

$subtype3
TCGA-A3-3308 TCGA-A3-3311 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3323 
        0.53        39.12        49.08        49.02        37.15        36.33 
TCGA-A3-3335 TCGA-A3-3347 TCGA-A3-3357 TCGA-A3-3378 TCGA-A3-3382 TCGA-A3-3387 
       21.83        36.07        46.85        20.71        18.87        20.25 
TCGA-AK-3426 TCGA-AK-3431 TCGA-AK-3436 TCGA-AK-3445 TCGA-AK-3451 TCGA-B0-4688 
       29.06        60.92        67.17        42.05        48.69         3.22 
TCGA-B0-4690 TCGA-B0-4691 TCGA-B0-4694 TCGA-B0-4696 TCGA-B0-4697 TCGA-B0-4698 
        1.41         4.57         3.48        28.47        18.97         1.38 
TCGA-B0-4700 TCGA-B0-4703 TCGA-B0-4707 TCGA-B0-4712 TCGA-B0-4713 TCGA-B0-4810 
       65.06         5.98        19.69        43.96         6.61         8.75 
TCGA-B0-4813 TCGA-B0-4815 TCGA-B0-4816 TCGA-B0-4817 TCGA-B0-4819 TCGA-B0-4821 
        0.59        49.02        35.54        27.88         6.02        40.41 
TCGA-B0-4827 TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-4842 TCGA-B0-4843 TCGA-B0-4844 
       29.06        40.70        42.48        53.79        10.52        10.29 
TCGA-B0-4848 TCGA-B0-5075 TCGA-B0-5080 TCGA-B0-5081 TCGA-B0-5084 TCGA-B0-5088 
       29.00        19.99         7.30         7.66         7.27        14.24 
TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5095 TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5098 
       15.09        10.95         8.05         2.20         4.96        52.08 
TCGA-B0-5107 TCGA-B0-5108 TCGA-B0-5109 TCGA-B0-5116 TCGA-B0-5400 TCGA-B0-5402 
       30.48         5.33        19.27         3.39        22.26         0.33 
TCGA-B0-5694 TCGA-B0-5701 TCGA-B0-5706 TCGA-B0-5709 TCGA-B2-5633 TCGA-B2-5641 
       15.42        41.95        79.36        77.49         7.04         5.52 
TCGA-B4-5832 TCGA-B4-5838 TCGA-B8-4143 TCGA-B8-4620 TCGA-B8-5158 TCGA-B8-5162 
        0.23         5.46        23.31         7.43         2.96         0.72 
TCGA-B8-5163 TCGA-B8-5545 TCGA-B8-5549 TCGA-B8-5550 TCGA-B8-5551 TCGA-BP-4163 
        0.13         8.15         6.38         6.48         0.49        93.34 
TCGA-BP-4167 TCGA-BP-4169 TCGA-BP-4176 TCGA-BP-4326 TCGA-BP-4329 TCGA-BP-4337 
       89.36        23.05        64.27        53.39        27.78         0.07 
TCGA-BP-4338 TCGA-BP-4342 TCGA-BP-4343 TCGA-BP-4345 TCGA-BP-4352 TCGA-BP-4353 
       90.28        74.17        62.86        49.84        11.31        12.33 
TCGA-BP-4354 TCGA-BP-4759 TCGA-BP-4761 TCGA-BP-4763 TCGA-BP-4770 TCGA-BP-4771 
       33.99        76.41         5.98        41.75        10.82         5.29 
TCGA-BP-4781 TCGA-BP-4782 TCGA-BP-4787 TCGA-BP-4797 TCGA-BP-4798 TCGA-BP-4799 
       68.38        11.64        15.75        36.39        10.98        37.25 
TCGA-BP-4803 TCGA-BP-4804 TCGA-BP-4959 TCGA-BP-4960 TCGA-BP-4962 TCGA-BP-4964 
        6.67        47.97        87.45        71.41        58.68        61.22 
TCGA-BP-4967 TCGA-BP-4971 TCGA-BP-4983 TCGA-BP-4985 TCGA-BP-4986 TCGA-BP-4988 
        6.71        48.89        46.42        31.27        25.81        27.19 
TCGA-BP-4998 TCGA-BP-5009 TCGA-BP-5010 TCGA-BP-5169 TCGA-BP-5170 TCGA-BP-5174 
       30.61        35.90        28.83         6.31        79.27        74.20 
TCGA-BP-5175 TCGA-BP-5178 TCGA-BP-5180 TCGA-BP-5189 TCGA-BP-5191 TCGA-BP-5195 
       30.64        62.86        62.20        27.02        31.76        24.59 
TCGA-BP-5196 TCGA-BP-5198 TCGA-BP-5199 TCGA-CJ-4635 TCGA-CJ-4636 TCGA-CJ-4637 
       33.47        19.82        44.52        46.55        63.25        73.22 
TCGA-CJ-4638 TCGA-CJ-4641 TCGA-CJ-4868 TCGA-CJ-4869 TCGA-CJ-4871 TCGA-CJ-4872 
       14.17        54.61        21.21        83.97        79.63        47.18 
TCGA-CJ-4873 TCGA-CJ-4881 TCGA-CJ-4882 TCGA-CJ-4884 TCGA-CJ-4888 TCGA-CJ-4890 
       74.24        66.18        61.91        32.65        51.48        68.55 
TCGA-CJ-4891 TCGA-CJ-4895 TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-4902 TCGA-CJ-4912 
       26.89        39.45        41.88        47.67        49.94        54.44 
TCGA-CJ-4918 TCGA-CJ-4920 TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5676 TCGA-CJ-5677 
        3.02         4.57        18.81        63.85        84.66        25.71 
TCGA-CJ-5679 TCGA-CJ-5680 TCGA-CJ-5682 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6030 
       22.29        25.25        61.91        60.99        53.42        75.55 
TCGA-CJ-6031 TCGA-CJ-6033 TCGA-CW-5580 TCGA-CW-5588 TCGA-CW-5590 TCGA-CW-6087 
       62.63         7.36        64.57        66.28        35.34         1.35 
TCGA-CW-6090 TCGA-CW-6097 TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4858 TCGA-CZ-4860 
       75.88        18.74        46.16        47.08        63.88         6.74 
TCGA-CZ-4861 TCGA-CZ-4862 TCGA-CZ-4865 TCGA-CZ-4866 TCGA-CZ-5452 TCGA-CZ-5454 
       14.63        60.59         5.42        58.13        51.16        23.74 
TCGA-CZ-5456 TCGA-CZ-5458 TCGA-CZ-5461 TCGA-CZ-5462 TCGA-CZ-5464 TCGA-CZ-5468 
       51.22        51.22        10.85        10.22        49.05         1.94 
TCGA-CZ-5469 TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5987 TCGA-CZ-5988 TCGA-EU-5905 
       31.07        49.02        53.56        14.30        22.78         3.88 

subtype1 subtype2 subtype3 
    0.20     0.10     0.07 
subtype1 subtype2 subtype3 
   92.02   111.02    93.34 
subtype1 subtype2 subtype3 
  27.845   37.250   30.545 
[1] "0.2 - 92.0 (27.8)"  "0.1 - 111.0 (37.2)" "0.1 - 93.3 (30.5)" 
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [37] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [43] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[169] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[175] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[181] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[193] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[199] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[205] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[217] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[229] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[235] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[247] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[253] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[259] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[265] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[271] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[277] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[283] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[289] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[295] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[301] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[307] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[313] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[319] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[325] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[331] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[337] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[343] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[349] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[355] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[361] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[367] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[373] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[379] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[385] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[391] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[397] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[403] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[409] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[415] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[421] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[427] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[433] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[439] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[445] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[451] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[457] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[463] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[469] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[475] "subtype1" "subtype2" "subtype3" "subtype2"
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [37] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [43] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[169] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[175] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[181] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[193] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[199] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[205] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[217] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[229] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[235] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[247] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[253] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[259] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[265] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[271] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[277] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[283] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[289] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[295] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[301] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[307] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[313] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[319] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[325] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[331] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[337] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[343] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[349] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[355] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[361] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[367] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[373] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[379] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[385] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[391] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[397] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[403] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[409] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[415] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[421] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[427] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[433] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[439] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[445] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[451] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[457] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[463] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[469] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[475] "subtype1" "subtype2" "subtype3" "subtype2"
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [37] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [43] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[169] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[175] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[181] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[193] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[199] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[205] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[217] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[229] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[235] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[247] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[253] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[259] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[265] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[271] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[277] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[283] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[289] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[295] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[301] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[307] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[313] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[319] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[325] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[331] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[337] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[343] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[349] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[355] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[361] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[367] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[373] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[379] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[385] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[391] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[397] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[403] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[409] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[415] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[421] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[427] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[433] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[439] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[445] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[451] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[457] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[463] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[469] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[475] "subtype1" "subtype2" "subtype3" "subtype2"
D8V2, continuous
D8V3, binary
          cls
clus         0   1
  subtype1  23  50
  subtype2  93 122
  subtype3  51 141
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   23   50
  subtype2   93  122
  subtype3   51  141
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       23       93       51
  MALE         50      122      141
D8V4, continuous
D8V5, binary
          cls
clus         0   1
  subtype1  70   3
  subtype2 191  24
  subtype3 142  50
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   70    3
  subtype2  191   24
  subtype3  142   50
    clus
vv   subtype1 subtype2 subtype3
  M0       70      191      142
  M1        3       24       50
          vv
clus        N0  N1  NX
  subtype1  32   2  39
  subtype2 104   1 110
  subtype3  92  14  86
D8V6, multiclass
D8V7, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      54        6        10        3
  subtype2     126       22        44       23
  subtype3      53       21        66       52
D8V8, multiclass

Clustering(9) Variable = MIRSEQ_CNMF
D9V1, survival
          sevent
clus2        0   1
  subtype1  85  32
  subtype2 149  43
  subtype3  89  81
subtype1 subtype2 subtype3 
     117      192      170 
subtype1 subtype2 subtype3 
      32       43       81 
$subtype1
TCGA-A3-3308 TCGA-A3-3313 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3347 TCGA-A3-3349 
        0.53        24.16        49.08        49.02        36.07        45.53 
TCGA-A3-3362 TCGA-A3-3373 TCGA-A3-3376 TCGA-A3-3387 TCGA-AK-3425 TCGA-AK-3431 
       51.25        10.98        35.18        20.25       109.91        60.92 
TCGA-AK-3461 TCGA-AK-3465 TCGA-B0-4688 TCGA-B0-4697 TCGA-B0-4700 TCGA-B0-4703 
       28.04        12.13         3.22        18.97        65.06         5.98 
TCGA-B0-4811 TCGA-B0-4816 TCGA-B0-4822 TCGA-B0-4823 TCGA-B0-4827 TCGA-B0-4839 
       39.32        35.54        36.53        14.93        29.06        53.85 
TCGA-B0-4843 TCGA-B0-4945 TCGA-B0-5080 TCGA-B0-5095 TCGA-B0-5100 TCGA-B0-5108 
       10.52        70.52         7.30         8.05        62.89         5.33 
TCGA-B0-5119 TCGA-B0-5120 TCGA-B0-5691 TCGA-B0-5702 TCGA-B0-5709 TCGA-B0-5710 
        1.58         1.81        91.43        38.07        77.49        31.46 
TCGA-B0-5812 TCGA-B2-5636 TCGA-B4-5836 TCGA-B4-5838 TCGA-B8-4619 TCGA-B8-5162 
       76.41         8.48         4.64         5.46         0.62         0.72 
TCGA-B8-5163 TCGA-B8-5545 TCGA-B8-5550 TCGA-B8-5552 TCGA-BP-4160 TCGA-BP-4166 
        0.13         8.15         6.48         7.20        94.72         0.43 
TCGA-BP-4167 TCGA-BP-4169 TCGA-BP-4173 TCGA-BP-4177 TCGA-BP-4331 TCGA-BP-4332 
       89.36        23.05        62.24        54.90        80.65        37.25 
TCGA-BP-4337 TCGA-BP-4341 TCGA-BP-4343 TCGA-BP-4345 TCGA-BP-4353 TCGA-BP-4760 
        0.07        52.24        62.86        49.84        12.33        73.94 
TCGA-BP-4762 TCGA-BP-4763 TCGA-BP-4765 TCGA-BP-4769 TCGA-BP-4770 TCGA-BP-4789 
       44.15        41.75        71.80        61.68        10.82        48.95 
TCGA-BP-4790 TCGA-BP-4795 TCGA-BP-4801 TCGA-BP-4804 TCGA-BP-4807 TCGA-BP-4965 
       36.53        20.38        36.95        47.97         6.94        61.51 
TCGA-BP-4969 TCGA-BP-4970 TCGA-BP-4971 TCGA-BP-4972 TCGA-BP-4982 TCGA-BP-4985 
       58.98        14.20        48.89        49.35        33.30        31.27 
TCGA-BP-5008 TCGA-BP-5010 TCGA-BP-5170 TCGA-BP-5177 TCGA-BP-5182 TCGA-BP-5184 
       35.21        28.83        79.27         9.63        38.30        37.25 
TCGA-BP-5186 TCGA-BP-5196 TCGA-BP-5198 TCGA-BP-5199 TCGA-BP-5200 TCGA-CJ-4634 
       22.78        33.47        19.82        44.52        28.96        59.84 
TCGA-CJ-4636 TCGA-CJ-4642 TCGA-CJ-4872 TCGA-CJ-4882 TCGA-CJ-4886 TCGA-CJ-4889 
       63.25        53.16        47.18        61.91        64.14        63.95 
TCGA-CJ-4890 TCGA-CJ-4902 TCGA-CJ-4905 TCGA-CJ-4907 TCGA-CJ-4908 TCGA-CJ-4918 
       68.55        49.94        49.15        49.25        50.30         3.02 
TCGA-CJ-5671 TCGA-CJ-5680 TCGA-CJ-6031 TCGA-CW-5583 TCGA-CW-5588 TCGA-CW-6088 
       63.85        25.25        62.63        81.83        66.28        75.98 
TCGA-CW-6090 TCGA-CZ-4860 TCGA-CZ-5988 TCGA-DV-5568 TCGA-DV-5573 TCGA-DV-5574 
       75.88         6.74        22.78        12.16        37.15        23.77 
TCGA-DV-5575 TCGA-DV-5576 TCGA-EU-5905 
       33.04        23.90         3.88 

$subtype2
TCGA-A3-3307 TCGA-A3-3311 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3326 
       47.21        39.12        49.58        48.56        38.99        37.38 
TCGA-A3-3331 TCGA-A3-3351 TCGA-A3-3358 TCGA-A3-3365 TCGA-A3-3367 TCGA-A3-3370 
       48.82        29.92        42.97        28.67        34.65        25.51 
TCGA-A3-3372 TCGA-A3-3380 TCGA-A3-3383 TCGA-A3-3385 TCGA-AK-3428 TCGA-AK-3429 
       24.16        18.64        28.31        23.87        73.08        66.31 
TCGA-AK-3434 TCGA-AK-3444 TCGA-AK-3450 TCGA-AK-3454 TCGA-AK-3455 TCGA-AK-3460 
       68.58        48.36        49.28        28.70        22.45        31.27 
TCGA-B0-4693 TCGA-B0-4701 TCGA-B0-4706 TCGA-B0-4710 TCGA-B0-4714 TCGA-B0-4814 
        2.53         6.84         0.85         0.16         0.10         1.55 
TCGA-B0-4818 TCGA-B0-4824 TCGA-B0-4828 TCGA-B0-4833 TCGA-B0-4838 TCGA-B0-4841 
       14.01        48.10        10.09        78.41        23.93         4.57 
TCGA-B0-4845 TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 TCGA-B0-4852 TCGA-B0-5077 
       65.26        39.42        26.04         2.27        35.47        42.44 
TCGA-B0-5085 TCGA-B0-5099 TCGA-B0-5102 TCGA-B0-5104 TCGA-B0-5110 TCGA-B0-5113 
       25.28        15.95        90.84        90.44        18.41         0.72 
TCGA-B0-5115 TCGA-B0-5116 TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5402 TCGA-B0-5690 
        2.96         3.39         6.12         6.25         0.33        71.67 
TCGA-B0-5692 TCGA-B0-5693 TCGA-B0-5694 TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5698 
       48.89        60.89        15.42        34.26        31.04        71.70 
TCGA-B0-5699 TCGA-B0-5700 TCGA-B0-5703 TCGA-B0-5705 TCGA-B0-5711 TCGA-B0-5712 
       79.73        12.33         8.61       109.64        83.93        80.15 
TCGA-B0-5713 TCGA-B2-3924 TCGA-B2-4099 TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5633 
       61.28         6.38         3.62         2.96         0.49         7.04 
TCGA-B2-5635 TCGA-B2-5639 TCGA-B4-5377 TCGA-B4-5834 TCGA-B4-5843 TCGA-B4-5844 
       10.36         6.28         9.57         1.25         0.36         0.23 
TCGA-B8-4146 TCGA-B8-4148 TCGA-B8-4151 TCGA-B8-4153 TCGA-B8-4154 TCGA-B8-4622 
       16.80        12.46         9.17        13.28         8.38         5.95 
TCGA-B8-5159 TCGA-B8-5164 TCGA-B8-5165 TCGA-B8-5546 TCGA-B8-5549 TCGA-B8-5553 
        4.37         0.76         0.26         0.46         6.38         0.46 
TCGA-BP-4158 TCGA-BP-4159 TCGA-BP-4162 TCGA-BP-4164 TCGA-BP-4165 TCGA-BP-4174 
      111.02        85.48       101.06        32.61        96.85        61.78 
TCGA-BP-4325 TCGA-BP-4327 TCGA-BP-4329 TCGA-BP-4330 TCGA-BP-4335 TCGA-BP-4340 
       97.45         3.55        27.78        62.07        15.12        18.48 
TCGA-BP-4344 TCGA-BP-4347 TCGA-BP-4355 TCGA-BP-4756 TCGA-BP-4758 TCGA-BP-4759 
       54.77        44.94        31.33        12.30        72.59        76.41 
TCGA-BP-4766 TCGA-BP-4768 TCGA-BP-4775 TCGA-BP-4776 TCGA-BP-4961 TCGA-BP-4973 
       48.03        13.15        60.56        13.48        63.62        45.50 
TCGA-BP-4975 TCGA-BP-4976 TCGA-BP-4981 TCGA-BP-4987 TCGA-BP-4991 TCGA-BP-4992 
       47.11        53.65        36.07        36.95        34.32        16.44 
TCGA-BP-4993 TCGA-BP-4995 TCGA-BP-5001 TCGA-BP-5004 TCGA-BP-5007 TCGA-BP-5168 
        5.79        45.07        38.70        37.02        37.48        48.10 
TCGA-BP-5173 TCGA-BP-5174 TCGA-BP-5176 TCGA-BP-5181 TCGA-BP-5183 TCGA-BP-5185 
        1.78        74.20        52.27        49.15        36.23        37.22 
TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5195 TCGA-BP-5201 TCGA-BP-5202 TCGA-CJ-4639 
       23.47        13.41        24.59        31.27         0.95        75.88 
TCGA-CJ-4643 TCGA-CJ-4870 TCGA-CJ-4875 TCGA-CJ-4878 TCGA-CJ-4885 TCGA-CJ-4892 
       58.92        49.22        77.36        71.87        69.86        49.97 
TCGA-CJ-4893 TCGA-CJ-4894 TCGA-CJ-4897 TCGA-CJ-4899 TCGA-CJ-4903 TCGA-CJ-4904 
       24.62        27.65        59.44        50.20        51.25        58.92 
TCGA-CJ-4916 TCGA-CJ-4920 TCGA-CJ-5675 TCGA-CJ-5681 TCGA-CJ-5682 TCGA-CJ-5683 
       45.11         4.57        79.86        18.12        61.91        62.10 
TCGA-CJ-5684 TCGA-CJ-5686 TCGA-CJ-6032 TCGA-CW-5581 TCGA-CW-5584 TCGA-CW-5585 
       73.32        67.00        83.77        92.02         5.39        85.78 
TCGA-CW-5587 TCGA-CW-5589 TCGA-CW-6093 TCGA-CZ-4853 TCGA-CZ-4856 TCGA-CZ-4859 
       73.18        78.15        79.89        25.45         0.59        58.75 
TCGA-CZ-4862 TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-4865 TCGA-CZ-4866 TCGA-CZ-5451 
       60.59        55.56        93.04         5.42        58.13        54.84 
TCGA-CZ-5453 TCGA-CZ-5454 TCGA-CZ-5455 TCGA-CZ-5457 TCGA-CZ-5458 TCGA-CZ-5459 
        0.82        23.74        18.44        50.86        51.22        49.81 
TCGA-CZ-5460 TCGA-CZ-5463 TCGA-CZ-5465 TCGA-CZ-5467 TCGA-CZ-5982 TCGA-CZ-5986 
       47.01        21.76        45.27         2.40        67.13        12.26 
TCGA-CZ-5989 TCGA-DV-5565 TCGA-DV-5566 TCGA-DV-5569 TCGA-EU-5904 TCGA-EU-5906 
       52.57        43.69        45.96        11.67        18.08         6.77 

$subtype3
TCGA-A3-3319 TCGA-A3-3323 TCGA-A3-3346 TCGA-A3-3357 TCGA-A3-3363 TCGA-A3-3374 
       37.15        36.33         4.50        46.85        10.49        43.17 
TCGA-A3-3378 TCGA-A3-3382 TCGA-AK-3426 TCGA-AK-3427 TCGA-AK-3430 TCGA-AK-3433 
       20.71        18.87        29.06        84.36        15.78        72.07 
TCGA-AK-3436 TCGA-AK-3440 TCGA-AK-3443 TCGA-AK-3445 TCGA-AK-3447 TCGA-AK-3451 
       67.17        57.34        46.78        42.05        40.01        48.69 
TCGA-AK-3453 TCGA-AK-3456 TCGA-AK-3458 TCGA-AS-3777 TCGA-B0-4690 TCGA-B0-4691 
       39.12         1.51        38.40         1.32         1.41         4.57 
TCGA-B0-4694 TCGA-B0-4696 TCGA-B0-4698 TCGA-B0-4699 TCGA-B0-4707 TCGA-B0-4712 
        3.48        28.47         1.38         3.58        19.69        43.96 
TCGA-B0-4713 TCGA-B0-4718 TCGA-B0-4810 TCGA-B0-4813 TCGA-B0-4815 TCGA-B0-4817 
        6.61         7.04         8.75         0.59        49.02        27.88 
TCGA-B0-4819 TCGA-B0-4821 TCGA-B0-4834 TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-4842 
        6.02        40.41        68.71        40.70        42.48        53.79 
TCGA-B0-4844 TCGA-B0-4848 TCGA-B0-5075 TCGA-B0-5081 TCGA-B0-5083 TCGA-B0-5084 
       10.29        29.00        19.99         7.66        15.29         7.27 
TCGA-B0-5088 TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5098 
       14.24        15.09        10.95         2.20         4.96        52.08 
TCGA-B0-5106 TCGA-B0-5107 TCGA-B0-5109 TCGA-B0-5400 TCGA-B0-5697 TCGA-B0-5701 
       52.50        30.48        19.27        22.26        37.32        41.95 
TCGA-B0-5706 TCGA-B0-5707 TCGA-B2-3923 TCGA-B2-4098 TCGA-B2-5641 TCGA-B4-5378 
       79.36        85.22         5.85         1.64         5.52         5.75 
TCGA-B4-5832 TCGA-B4-5835 TCGA-B8-4143 TCGA-B8-4620 TCGA-B8-4621 TCGA-B8-5158 
        0.23         0.53        23.31         7.43         7.07         2.96 
TCGA-B8-5551 TCGA-BP-4161 TCGA-BP-4163 TCGA-BP-4176 TCGA-BP-4326 TCGA-BP-4334 
        0.49        90.28        93.34        64.27        53.39        21.21 
TCGA-BP-4338 TCGA-BP-4342 TCGA-BP-4346 TCGA-BP-4351 TCGA-BP-4352 TCGA-BP-4354 
       90.28        74.17        49.08        31.86        11.31        33.99 
TCGA-BP-4761 TCGA-BP-4771 TCGA-BP-4777 TCGA-BP-4781 TCGA-BP-4782 TCGA-BP-4787 
        5.98         5.29        56.91        68.38        11.64        15.75 
TCGA-BP-4797 TCGA-BP-4798 TCGA-BP-4799 TCGA-BP-4803 TCGA-BP-4959 TCGA-BP-4960 
       36.39        10.98        37.25         6.67        87.45        71.41 
TCGA-BP-4962 TCGA-BP-4963 TCGA-BP-4967 TCGA-BP-4968 TCGA-BP-4974 TCGA-BP-4977 
       58.68        60.30         6.71        57.37         7.23        14.93 
TCGA-BP-4983 TCGA-BP-4986 TCGA-BP-4988 TCGA-BP-4989 TCGA-BP-4994 TCGA-BP-4998 
       46.42        25.81        27.19         3.85        42.97        30.61 
TCGA-BP-5000 TCGA-BP-5009 TCGA-BP-5169 TCGA-BP-5175 TCGA-BP-5178 TCGA-BP-5180 
       18.51        35.90         6.31        30.64        62.86        62.20 
TCGA-BP-5187 TCGA-BP-5189 TCGA-BP-5190 TCGA-BP-5191 TCGA-CJ-4635 TCGA-CJ-4637 
       13.35        27.02        33.21        31.76        46.55        73.22 
TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4641 TCGA-CJ-4644 TCGA-CJ-4869 TCGA-CJ-4871 
       14.17        65.69        54.61        11.05        83.97        79.63 
TCGA-CJ-4873 TCGA-CJ-4876 TCGA-CJ-4881 TCGA-CJ-4884 TCGA-CJ-4887 TCGA-CJ-4888 
       74.24        64.27        66.18        32.65        21.34        51.48 
TCGA-CJ-4891 TCGA-CJ-4895 TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-4912 TCGA-CJ-4923 
       26.89        39.45        41.88        47.67        54.44        18.81 
TCGA-CJ-5672 TCGA-CJ-5676 TCGA-CJ-5677 TCGA-CJ-5678 TCGA-CJ-5679 TCGA-CJ-5689 
       72.00        84.66        25.71        18.84        22.29         0.20 
TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6030 TCGA-CJ-6033 TCGA-CW-5580 TCGA-CW-5590 
       60.99        53.42        75.55         7.36        64.57        35.34 
TCGA-CW-5591 TCGA-CW-6087 TCGA-CW-6097 TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4858 
       74.63         1.35        18.74        46.16        47.08        63.88 
TCGA-CZ-4861 TCGA-CZ-5452 TCGA-CZ-5456 TCGA-CZ-5461 TCGA-CZ-5462 TCGA-CZ-5464 
       14.63        51.16        51.22        10.85        10.22        49.05 
TCGA-CZ-5466 TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5987 
       22.52         1.94        31.07        49.02        53.56        14.30 
TCGA-DV-5567 TCGA-EU-5907 
       29.88         4.14 

subtype1 subtype2 subtype3 
    0.07     0.10     0.20 
subtype1 subtype2 subtype3 
  109.91   111.02    93.34 
subtype1 subtype2 subtype3 
  36.950   35.770   30.625 
[1] "0.1 - 109.9 (37.0)" "0.1 - 111.0 (35.8)" "0.2 - 93.3 (30.6)" 
  [1] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [31] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [37] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [55] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [61] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [67] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [79] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [85] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [91] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[103] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[115] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[139] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[163] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[181] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[187] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[199] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[205] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[211] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[217] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[223] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[229] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[235] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[241] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[247] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[253] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[259] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[265] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[271] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[277] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[283] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[289] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[295] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[301] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[307] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[313] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[319] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[325] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[331] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[337] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[343] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[349] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[355] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[361] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[367] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[373] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[379] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[385] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[391] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[397] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[403] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[409] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[415] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[421] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[427] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[433] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[439] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[445] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[451] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[457] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[463] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[469] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[475] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
  [1] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [31] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [37] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [55] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [61] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [67] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [79] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [85] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [91] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[103] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[115] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[139] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[163] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[181] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[187] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[199] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[205] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[211] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[217] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[223] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[229] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[235] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[241] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[247] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[253] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[259] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[265] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[271] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[277] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[283] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[289] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[295] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[301] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[307] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[313] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[319] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[325] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[331] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[337] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[343] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[349] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[355] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[361] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[367] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[373] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[379] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[385] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[391] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[397] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[403] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[409] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[415] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[421] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[427] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[433] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[439] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[445] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[451] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[457] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[463] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[469] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[475] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
  [1] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [31] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [37] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [55] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [61] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [67] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [79] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [85] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [91] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[103] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[115] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[139] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[163] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[181] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[187] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[199] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[205] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[211] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[217] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[223] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[229] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[235] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[241] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[247] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[253] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[259] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[265] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[271] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[277] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[283] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[289] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[295] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[301] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[307] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[313] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[319] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[325] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[331] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[337] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[343] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[349] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[355] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[361] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[367] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[373] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[379] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[385] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[391] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[397] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[403] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[409] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[415] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[421] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[427] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[433] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[439] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[445] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[451] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[457] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[463] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[469] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[475] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
D9V2, continuous
D9V3, binary
          cls
clus         0   1
  subtype1  37  80
  subtype2  84 108
  subtype3  42 130
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   37   80
  subtype2   84  108
  subtype3   42  130
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       37       84       42
  MALE         80      108      130
D9V4, continuous
D9V5, binary
          cls
clus         0   1
  subtype1 108   9
  subtype2 169  23
  subtype3 128  44
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  108    9
  subtype2  169   23
  subtype3  128   44
    clus
vv   subtype1 subtype2 subtype3
  M0      108      169      128
  M1        9       23       44
          vv
clus        N0  N1  NX
  subtype1  56   3  58
  subtype2  86   2 104
  subtype3  80  13  79
D9V6, multiclass
D9V7, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      66       11        30       10
  subtype2     106       18        45       23
  subtype3      56       22        50       44
D9V8, multiclass

Clustering(10) Variable = MIRSEQ_CHIERARCHICAL
D10V1, survival
          sevent
clus2        0   1
  subtype1  23  13
  subtype2  92  70
  subtype3 208  73
subtype1 subtype2 subtype3 
      36      162      281 
subtype1 subtype2 subtype3 
      13       70       73 
$subtype1
TCGA-A3-3363 TCGA-A3-3374 TCGA-AK-3427 TCGA-AK-3433 TCGA-AK-3440 TCGA-AK-3443 
       10.49        43.17        84.36        72.07        57.34        46.78 
TCGA-AK-3447 TCGA-AK-3451 TCGA-AK-3453 TCGA-AK-3465 TCGA-AS-3777 TCGA-B0-4699 
       40.01        48.69        39.12        12.13         1.32         3.58 
TCGA-B0-4834 TCGA-B0-4842 TCGA-B0-5083 TCGA-B0-5707 TCGA-B2-3923 TCGA-B2-4098 
       68.71        53.79        15.29        85.22         5.85         1.64 
TCGA-B4-5835 TCGA-B8-4619 TCGA-B8-4621 TCGA-BP-4334 TCGA-BP-4761 TCGA-BP-4771 
        0.53         0.62         7.07        21.21         5.98         5.29 
TCGA-BP-4994 TCGA-BP-5000 TCGA-CJ-4638 TCGA-CJ-4869 TCGA-CJ-4888 TCGA-CJ-4891 
       42.97        18.51        14.17        83.97        51.48        26.89 
TCGA-CJ-5677 TCGA-CJ-5680 TCGA-CJ-6028 TCGA-CZ-4866 TCGA-CZ-5452 TCGA-CZ-5469 
       25.71        25.25        53.42        58.13        51.16        31.07 

$subtype2
TCGA-A3-3308 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3347 TCGA-A3-3362 TCGA-A3-3387 
        0.53        49.08        49.02        36.07        51.25        20.25 
TCGA-AK-3425 TCGA-AK-3426 TCGA-AK-3431 TCGA-AK-3445 TCGA-B0-4688 TCGA-B0-4690 
      109.91        29.06        60.92        42.05         3.22         1.41 
TCGA-B0-4691 TCGA-B0-4694 TCGA-B0-4696 TCGA-B0-4697 TCGA-B0-4698 TCGA-B0-4700 
        4.57         3.48        28.47        18.97         1.38        65.06 
TCGA-B0-4703 TCGA-B0-4707 TCGA-B0-4712 TCGA-B0-4713 TCGA-B0-4810 TCGA-B0-4811 
        5.98        19.69        43.96         6.61         8.75        39.32 
TCGA-B0-4813 TCGA-B0-4815 TCGA-B0-4816 TCGA-B0-4819 TCGA-B0-4821 TCGA-B0-4822 
        0.59        49.02        35.54         6.02        40.41        36.53 
TCGA-B0-4823 TCGA-B0-4827 TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-4843 TCGA-B0-4844 
       14.93        29.06        40.70        42.48        10.52        10.29 
TCGA-B0-4848 TCGA-B0-5080 TCGA-B0-5081 TCGA-B0-5084 TCGA-B0-5088 TCGA-B0-5095 
       29.00         7.30         7.66         7.27        14.24         8.05 
TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5098 TCGA-B0-5100 TCGA-B0-5108 TCGA-B0-5109 
        2.20         4.96        52.08        62.89         5.33        19.27 
TCGA-B0-5120 TCGA-B0-5400 TCGA-B0-5691 TCGA-B0-5702 TCGA-B0-5709 TCGA-B0-5812 
        1.81        22.26        91.43        38.07        77.49        76.41 
TCGA-B2-5635 TCGA-B2-5636 TCGA-B2-5641 TCGA-B4-5378 TCGA-B4-5838 TCGA-B8-4143 
       10.36         8.48         5.52         5.75         5.46        23.31 
TCGA-B8-4620 TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5545 TCGA-B8-5550 TCGA-B8-5551 
        7.43         0.72         0.13         8.15         6.48         0.49 
TCGA-B8-5552 TCGA-BP-4160 TCGA-BP-4163 TCGA-BP-4167 TCGA-BP-4169 TCGA-BP-4173 
        7.20        94.72        93.34        89.36        23.05        62.24 
TCGA-BP-4176 TCGA-BP-4177 TCGA-BP-4326 TCGA-BP-4332 TCGA-BP-4337 TCGA-BP-4342 
       64.27        54.90        53.39        37.25         0.07        74.17 
TCGA-BP-4343 TCGA-BP-4344 TCGA-BP-4345 TCGA-BP-4352 TCGA-BP-4354 TCGA-BP-4760 
       62.86        54.77        49.84        11.31        33.99        73.94 
TCGA-BP-4762 TCGA-BP-4763 TCGA-BP-4769 TCGA-BP-4770 TCGA-BP-4782 TCGA-BP-4787 
       44.15        41.75        61.68        10.82        11.64        15.75 
TCGA-BP-4789 TCGA-BP-4790 TCGA-BP-4795 TCGA-BP-4797 TCGA-BP-4798 TCGA-BP-4799 
       48.95        36.53        20.38        36.39        10.98        37.25 
TCGA-BP-4804 TCGA-BP-4807 TCGA-BP-4959 TCGA-BP-4960 TCGA-BP-4962 TCGA-BP-4967 
       47.97         6.94        87.45        71.41        58.68         6.71 
TCGA-BP-4968 TCGA-BP-4970 TCGA-BP-4971 TCGA-BP-4983 TCGA-BP-4985 TCGA-BP-4986 
       57.37        14.20        48.89        46.42        31.27        25.81 
TCGA-BP-4988 TCGA-BP-4989 TCGA-BP-4998 TCGA-BP-5008 TCGA-BP-5010 TCGA-BP-5169 
       27.19         3.85        30.61        35.21        28.83         6.31 
TCGA-BP-5170 TCGA-BP-5182 TCGA-BP-5187 TCGA-BP-5196 TCGA-BP-5198 TCGA-BP-5199 
       79.27        38.30        13.35        33.47        19.82        44.52 
TCGA-CJ-4635 TCGA-CJ-4636 TCGA-CJ-4637 TCGA-CJ-4640 TCGA-CJ-4641 TCGA-CJ-4642 
       46.55        63.25        73.22        65.69        54.61        53.16 
TCGA-CJ-4871 TCGA-CJ-4872 TCGA-CJ-4881 TCGA-CJ-4882 TCGA-CJ-4889 TCGA-CJ-4890 
       79.63        47.18        66.18        61.91        63.95        68.55 
TCGA-CJ-4895 TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-4902 TCGA-CJ-4907 TCGA-CJ-4918 
       39.45        41.88        47.67        49.94        49.25         3.02 
TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5679 TCGA-CJ-6027 TCGA-CJ-6030 TCGA-CJ-6031 
       18.81        63.85        22.29        60.99        75.55        62.63 
TCGA-CJ-6033 TCGA-CW-5588 TCGA-CW-6087 TCGA-CW-6090 TCGA-CW-6097 TCGA-CZ-4854 
        7.36        66.28         1.35        75.88        18.74        46.16 
TCGA-CZ-4857 TCGA-CZ-4858 TCGA-CZ-4860 TCGA-CZ-4865 TCGA-CZ-5456 TCGA-CZ-5464 
       47.08        63.88         6.74         5.42        51.22        49.05 
TCGA-CZ-5988 TCGA-DV-5567 TCGA-DV-5573 TCGA-DV-5574 TCGA-DV-5576 TCGA-EU-5905 
       22.78        29.88        37.15        23.77        23.90         3.88 

$subtype3
TCGA-A3-3307 TCGA-A3-3311 TCGA-A3-3313 TCGA-A3-3319 TCGA-A3-3320 TCGA-A3-3322 
       47.21        39.12        24.16        37.15        49.58        48.56 
TCGA-A3-3323 TCGA-A3-3324 TCGA-A3-3326 TCGA-A3-3331 TCGA-A3-3346 TCGA-A3-3349 
       36.33        38.99        37.38        48.82         4.50        45.53 
TCGA-A3-3351 TCGA-A3-3357 TCGA-A3-3358 TCGA-A3-3365 TCGA-A3-3367 TCGA-A3-3370 
       29.92        46.85        42.97        28.67        34.65        25.51 
TCGA-A3-3372 TCGA-A3-3373 TCGA-A3-3376 TCGA-A3-3378 TCGA-A3-3380 TCGA-A3-3382 
       24.16        10.98        35.18        20.71        18.64        18.87 
TCGA-A3-3383 TCGA-A3-3385 TCGA-AK-3428 TCGA-AK-3429 TCGA-AK-3430 TCGA-AK-3434 
       28.31        23.87        73.08        66.31        15.78        68.58 
TCGA-AK-3436 TCGA-AK-3444 TCGA-AK-3450 TCGA-AK-3454 TCGA-AK-3455 TCGA-AK-3456 
       67.17        48.36        49.28        28.70        22.45         1.51 
TCGA-AK-3458 TCGA-AK-3460 TCGA-AK-3461 TCGA-B0-4693 TCGA-B0-4701 TCGA-B0-4706 
       38.40        31.27        28.04         2.53         6.84         0.85 
TCGA-B0-4710 TCGA-B0-4714 TCGA-B0-4718 TCGA-B0-4814 TCGA-B0-4817 TCGA-B0-4818 
        0.16         0.10         7.04         1.55        27.88        14.01 
TCGA-B0-4824 TCGA-B0-4828 TCGA-B0-4833 TCGA-B0-4838 TCGA-B0-4839 TCGA-B0-4841 
       48.10        10.09        78.41        23.93        53.85         4.57 
TCGA-B0-4845 TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 TCGA-B0-4852 TCGA-B0-4945 
       65.26        39.42        26.04         2.27        35.47        70.52 
TCGA-B0-5075 TCGA-B0-5077 TCGA-B0-5085 TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5099 
       19.99        42.44        25.28        15.09        10.95        15.95 
TCGA-B0-5102 TCGA-B0-5104 TCGA-B0-5106 TCGA-B0-5107 TCGA-B0-5110 TCGA-B0-5113 
       90.84        90.44        52.50        30.48        18.41         0.72 
TCGA-B0-5115 TCGA-B0-5116 TCGA-B0-5119 TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5402 
        2.96         3.39         1.58         6.12         6.25         0.33 
TCGA-B0-5690 TCGA-B0-5692 TCGA-B0-5693 TCGA-B0-5694 TCGA-B0-5695 TCGA-B0-5696 
       71.67        48.89        60.89        15.42        34.26        31.04 
TCGA-B0-5697 TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5700 TCGA-B0-5701 TCGA-B0-5703 
       37.32        71.70        79.73        12.33        41.95         8.61 
TCGA-B0-5705 TCGA-B0-5706 TCGA-B0-5710 TCGA-B0-5711 TCGA-B0-5712 TCGA-B0-5713 
      109.64        79.36        31.46        83.93        80.15        61.28 
TCGA-B2-3924 TCGA-B2-4099 TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5633 TCGA-B2-5639 
        6.38         3.62         2.96         0.49         7.04         6.28 
TCGA-B4-5377 TCGA-B4-5832 TCGA-B4-5834 TCGA-B4-5836 TCGA-B4-5843 TCGA-B4-5844 
        9.57         0.23         1.25         4.64         0.36         0.23 
TCGA-B8-4146 TCGA-B8-4148 TCGA-B8-4151 TCGA-B8-4153 TCGA-B8-4154 TCGA-B8-4622 
       16.80        12.46         9.17        13.28         8.38         5.95 
TCGA-B8-5158 TCGA-B8-5159 TCGA-B8-5164 TCGA-B8-5165 TCGA-B8-5546 TCGA-B8-5549 
        2.96         4.37         0.76         0.26         0.46         6.38 
TCGA-B8-5553 TCGA-BP-4158 TCGA-BP-4159 TCGA-BP-4161 TCGA-BP-4162 TCGA-BP-4164 
        0.46       111.02        85.48        90.28       101.06        32.61 
TCGA-BP-4165 TCGA-BP-4166 TCGA-BP-4174 TCGA-BP-4325 TCGA-BP-4327 TCGA-BP-4329 
       96.85         0.43        61.78        97.45         3.55        27.78 
TCGA-BP-4330 TCGA-BP-4331 TCGA-BP-4335 TCGA-BP-4338 TCGA-BP-4340 TCGA-BP-4341 
       62.07        80.65        15.12        90.28        18.48        52.24 
TCGA-BP-4346 TCGA-BP-4347 TCGA-BP-4351 TCGA-BP-4353 TCGA-BP-4355 TCGA-BP-4756 
       49.08        44.94        31.86        12.33        31.33        12.30 
TCGA-BP-4758 TCGA-BP-4759 TCGA-BP-4765 TCGA-BP-4766 TCGA-BP-4768 TCGA-BP-4775 
       72.59        76.41        71.80        48.03        13.15        60.56 
TCGA-BP-4776 TCGA-BP-4777 TCGA-BP-4781 TCGA-BP-4801 TCGA-BP-4803 TCGA-BP-4961 
       13.48        56.91        68.38        36.95         6.67        63.62 
TCGA-BP-4963 TCGA-BP-4965 TCGA-BP-4969 TCGA-BP-4972 TCGA-BP-4973 TCGA-BP-4974 
       60.30        61.51        58.98        49.35        45.50         7.23 
TCGA-BP-4975 TCGA-BP-4976 TCGA-BP-4977 TCGA-BP-4981 TCGA-BP-4982 TCGA-BP-4987 
       47.11        53.65        14.93        36.07        33.30        36.95 
TCGA-BP-4991 TCGA-BP-4992 TCGA-BP-4993 TCGA-BP-4995 TCGA-BP-5001 TCGA-BP-5004 
       34.32        16.44         5.79        45.07        38.70        37.02 
TCGA-BP-5007 TCGA-BP-5009 TCGA-BP-5168 TCGA-BP-5173 TCGA-BP-5174 TCGA-BP-5175 
       37.48        35.90        48.10         1.78        74.20        30.64 
TCGA-BP-5176 TCGA-BP-5177 TCGA-BP-5178 TCGA-BP-5180 TCGA-BP-5181 TCGA-BP-5183 
       52.27         9.63        62.86        62.20        49.15        36.23 
TCGA-BP-5184 TCGA-BP-5185 TCGA-BP-5186 TCGA-BP-5189 TCGA-BP-5190 TCGA-BP-5191 
       37.25        37.22        22.78        27.02        33.21        31.76 
TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5195 TCGA-BP-5200 TCGA-BP-5201 TCGA-BP-5202 
       23.47        13.41        24.59        28.96        31.27         0.95 
TCGA-CJ-4634 TCGA-CJ-4639 TCGA-CJ-4643 TCGA-CJ-4644 TCGA-CJ-4870 TCGA-CJ-4873 
       59.84        75.88        58.92        11.05        49.22        74.24 
TCGA-CJ-4875 TCGA-CJ-4876 TCGA-CJ-4878 TCGA-CJ-4884 TCGA-CJ-4885 TCGA-CJ-4886 
       77.36        64.27        71.87        32.65        69.86        64.14 
TCGA-CJ-4887 TCGA-CJ-4892 TCGA-CJ-4893 TCGA-CJ-4894 TCGA-CJ-4897 TCGA-CJ-4899 
       21.34        49.97        24.62        27.65        59.44        50.20 
TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4905 TCGA-CJ-4908 TCGA-CJ-4912 TCGA-CJ-4916 
       51.25        58.92        49.15        50.30        54.44        45.11 
TCGA-CJ-4920 TCGA-CJ-5672 TCGA-CJ-5675 TCGA-CJ-5676 TCGA-CJ-5678 TCGA-CJ-5681 
        4.57        72.00        79.86        84.66        18.84        18.12 
TCGA-CJ-5682 TCGA-CJ-5683 TCGA-CJ-5684 TCGA-CJ-5686 TCGA-CJ-5689 TCGA-CJ-6032 
       61.91        62.10        73.32        67.00         0.20        83.77 
TCGA-CW-5580 TCGA-CW-5581 TCGA-CW-5583 TCGA-CW-5584 TCGA-CW-5585 TCGA-CW-5587 
       64.57        92.02        81.83         5.39        85.78        73.18 
TCGA-CW-5589 TCGA-CW-5590 TCGA-CW-5591 TCGA-CW-6088 TCGA-CW-6093 TCGA-CZ-4853 
       78.15        35.34        74.63        75.98        79.89        25.45 
TCGA-CZ-4856 TCGA-CZ-4859 TCGA-CZ-4861 TCGA-CZ-4862 TCGA-CZ-4863 TCGA-CZ-4864 
        0.59        58.75        14.63        60.59        55.56        93.04 
TCGA-CZ-5451 TCGA-CZ-5453 TCGA-CZ-5454 TCGA-CZ-5455 TCGA-CZ-5457 TCGA-CZ-5458 
       54.84         0.82        23.74        18.44        50.86        51.22 
TCGA-CZ-5459 TCGA-CZ-5460 TCGA-CZ-5461 TCGA-CZ-5462 TCGA-CZ-5463 TCGA-CZ-5465 
       49.81        47.01        10.85        10.22        21.76        45.27 
TCGA-CZ-5466 TCGA-CZ-5467 TCGA-CZ-5468 TCGA-CZ-5982 TCGA-CZ-5984 TCGA-CZ-5985 
       22.52         2.40         1.94        67.13        49.02        53.56 
TCGA-CZ-5986 TCGA-CZ-5987 TCGA-CZ-5989 TCGA-DV-5565 TCGA-DV-5566 TCGA-DV-5568 
       12.26        14.30        52.57        43.69        45.96        12.16 
TCGA-DV-5569 TCGA-DV-5575 TCGA-EU-5904 TCGA-EU-5906 TCGA-EU-5907 
       11.67        33.04        18.08         6.77         4.14 

subtype1 subtype2 subtype3 
    0.53     0.07     0.10 
subtype1 subtype2 subtype3 
   85.22   109.91   111.02 
subtype1 subtype2 subtype3 
  28.980   35.375   35.180 
[1] "0.5 - 85.2 (29.0)"  "0.1 - 109.9 (35.4)" "0.1 - 111.0 (35.2)"
  [1] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [19] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [43] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [61] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [73] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [85] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[103] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[115] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[127] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[145] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[157] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[169] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[199] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[205] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[211] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[217] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[223] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[235] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[241] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[247] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[253] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[259] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[265] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[277] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[283] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[289] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[295] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[301] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[307] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[313] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[319] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[325] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[331] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[337] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[343] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[349] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[355] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[361] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[367] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[373] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[379] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[385] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[391] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[397] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[403] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[409] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[415] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[421] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[427] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[433] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[439] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[445] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[451] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[457] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[463] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[469] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[475] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
  [1] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [19] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [43] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [61] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [73] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [85] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[103] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[115] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[127] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[145] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[157] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[169] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[199] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[205] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[211] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[217] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[223] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[235] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[241] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[247] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[253] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[259] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[265] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[277] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[283] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[289] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[295] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[301] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[307] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[313] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[319] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[325] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[331] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[337] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[343] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[349] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[355] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[361] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[367] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[373] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[379] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[385] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[391] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[397] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[403] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[409] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[415] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[421] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[427] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[433] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[439] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[445] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[451] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[457] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[463] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[469] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[475] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
  [1] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [19] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [43] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [61] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [73] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [85] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[103] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[115] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[127] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[145] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[157] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[169] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[199] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[205] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[211] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[217] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[223] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[235] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[241] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[247] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[253] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[259] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[265] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[277] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[283] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[289] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[295] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[301] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[307] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[313] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[319] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[325] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[331] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[337] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[343] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[349] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[355] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[361] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[367] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[373] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[379] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[385] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[391] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[397] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[403] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[409] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[415] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[421] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[427] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[433] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[439] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[445] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[451] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[457] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[463] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[469] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[475] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
D10V2, continuous
D10V3, binary
          cls
clus         0   1
  subtype1  13  24
  subtype2  45 117
  subtype3 105 177
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   13   24
  subtype2   45  117
  subtype3  105  177
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       13       45      105
  MALE         24      117      177
D10V4, continuous
[1] "Remove cluster labels:" "subtype1"              
clus
subtype1 subtype2 subtype3 
       2       12       22 
 [1] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[13] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[19] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[25] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[31] "subtype2" "subtype3" "subtype2" "subtype3"
D10V5, binary
          cls
clus         0   1
  subtype1  30   7
  subtype2 132  30
  subtype3 243  39
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   30    7
  subtype2  132   30
  subtype3  243   39
    clus
vv   subtype1 subtype2 subtype3
  M0       30      132      243
  M1        7       30       39
          vv
clus        N0  N1  NX
  subtype1  19   3  15
  subtype2  76  11  75
  subtype3 127   4 151
D10V6, multiclass
D10V7, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      16        9         5        7
  subtype2      60       15        56       31
  subtype3     152       27        64       39
D10V8, multiclass

Clustering(11) Variable = MIRSEQ_MATURE_CNMF
D11V1, survival
          sevent
clus2       0  1
  subtype1 39 12
  subtype2 73 17
  subtype3 38 37
subtype1 subtype2 subtype3 
      51       90       75 
subtype1 subtype2 subtype3 
      12       17       37 
$subtype1
TCGA-A3-3317 TCGA-A3-3387 TCGA-AK-3465 TCGA-B0-4700 TCGA-B0-4811 TCGA-B0-4816 
       49.02        20.25        12.13        65.06        39.32        35.54 
TCGA-B0-5080 TCGA-B0-5088 TCGA-B0-5691 TCGA-B0-5702 TCGA-B0-5709 TCGA-B0-5710 
        7.30        14.24        91.43        38.07        77.49        31.46 
TCGA-B0-5812 TCGA-B2-5636 TCGA-B4-5836 TCGA-B4-5838 TCGA-B8-5545 TCGA-B8-5550 
       76.41         8.48         4.64         5.46         8.15         6.48 
TCGA-B8-5552 TCGA-BP-4173 TCGA-BP-4331 TCGA-BP-4770 TCGA-BP-4789 TCGA-BP-4790 
        7.20        62.24        80.65        10.82        48.95        36.53 
TCGA-BP-4797 TCGA-BP-4804 TCGA-BP-4807 TCGA-BP-4965 TCGA-BP-4969 TCGA-BP-4970 
       36.39        47.97         6.94        61.51        58.98        14.20 
TCGA-BP-4982 TCGA-BP-5008 TCGA-CJ-4889 TCGA-CJ-4890 TCGA-CJ-5671 TCGA-CJ-5680 
       33.30        35.21        63.95        68.55        63.85        25.25 
TCGA-CJ-5682 TCGA-CJ-6031 TCGA-CW-5583 TCGA-CW-5588 TCGA-CW-6088 TCGA-CW-6090 
       61.91        62.63        81.83        66.28        75.98        75.88 
TCGA-CW-6097 TCGA-CZ-4865 TCGA-CZ-5457 TCGA-CZ-5988 TCGA-DV-5573 TCGA-DV-5574 
       18.74         5.42        50.86        22.78        37.15        23.77 
TCGA-DV-5575 TCGA-DV-5576 TCGA-EU-5905 
       33.04        23.90         3.88 

$subtype2
TCGA-A3-3358 TCGA-AK-3440 TCGA-B0-4706 TCGA-B0-4710 TCGA-B0-4818 TCGA-B0-4833 
       42.97        57.34         0.85         0.16        14.01        78.41 
TCGA-B0-4852 TCGA-B0-5085 TCGA-B0-5399 TCGA-B0-5402 TCGA-B0-5690 TCGA-B0-5692 
       35.47        25.28         6.25         0.33        71.67        48.89 
TCGA-B0-5693 TCGA-B0-5694 TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5697 TCGA-B0-5698 
       60.89        15.42        34.26        31.04        37.32        71.70 
TCGA-B0-5699 TCGA-B0-5700 TCGA-B0-5703 TCGA-B0-5705 TCGA-B0-5711 TCGA-B0-5712 
       79.73        12.33         8.61       109.64        83.93        80.15 
TCGA-B0-5713 TCGA-B2-5633 TCGA-B2-5635 TCGA-B2-5639 TCGA-B4-5377 TCGA-B4-5834 
       61.28         7.04        10.36         6.28         9.57         1.25 
TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4146 TCGA-B8-4153 TCGA-B8-5546 TCGA-B8-5549 
        0.36         0.23        16.80        13.28         0.46         6.38 
TCGA-B8-5553 TCGA-BP-4340 TCGA-BP-4759 TCGA-BP-4961 TCGA-BP-4968 TCGA-BP-4973 
        0.46        18.48        76.41        63.62        57.37        45.50 
TCGA-BP-4974 TCGA-BP-4975 TCGA-BP-4976 TCGA-BP-4981 TCGA-BP-4987 TCGA-BP-4992 
        7.23        47.11        53.65        36.07        36.95        16.44 
TCGA-BP-4995 TCGA-BP-5001 TCGA-BP-5007 TCGA-CJ-4870 TCGA-CJ-4875 TCGA-CJ-4878 
       45.07        38.70        37.48        49.22        77.36        71.87 
TCGA-CJ-4899 TCGA-CJ-5675 TCGA-CJ-5678 TCGA-CJ-5681 TCGA-CJ-5683 TCGA-CJ-5684 
       50.20        79.86        18.84        18.12        62.10        73.32 
TCGA-CJ-5686 TCGA-CJ-6032 TCGA-CW-5581 TCGA-CW-5584 TCGA-CW-5585 TCGA-CW-5587 
       67.00        83.77        92.02         5.39        85.78        73.18 
TCGA-CW-5589 TCGA-CW-6093 TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-4866 TCGA-CZ-5451 
       78.15        79.89        55.56        93.04        58.13        54.84 
TCGA-CZ-5453 TCGA-CZ-5454 TCGA-CZ-5455 TCGA-CZ-5458 TCGA-CZ-5459 TCGA-CZ-5460 
        0.82        23.74        18.44        51.22        49.81        47.01 
TCGA-CZ-5462 TCGA-CZ-5463 TCGA-CZ-5465 TCGA-CZ-5467 TCGA-CZ-5982 TCGA-CZ-5986 
       10.22        21.76        45.27         2.40        67.13        12.26 
TCGA-CZ-5989 TCGA-DV-5565 TCGA-DV-5566 TCGA-DV-5569 TCGA-EU-5904 TCGA-EU-5906 
       52.57        43.69        45.96        11.67        18.08         6.77 

$subtype3
TCGA-AK-3458 TCGA-B0-4698 TCGA-B0-4712 TCGA-B0-4810 TCGA-B0-4815 TCGA-B0-4821 
       38.40         1.38        43.96         8.75        49.02        40.41 
TCGA-B0-4834 TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-5075 TCGA-B0-5084 TCGA-B0-5400 
       68.71        40.70        42.48        19.99         7.27        22.26 
TCGA-B0-5701 TCGA-B0-5706 TCGA-B0-5707 TCGA-B2-5641 TCGA-B4-5378 TCGA-B4-5832 
       41.95        79.36        85.22         5.52         5.75         0.23 
TCGA-B4-5835 TCGA-B8-4621 TCGA-B8-5551 TCGA-BP-4761 TCGA-BP-4771 TCGA-BP-4787 
        0.53         7.07         0.49         5.98         5.29        15.75 
TCGA-BP-4959 TCGA-BP-4960 TCGA-BP-4967 TCGA-BP-4971 TCGA-BP-4977 TCGA-BP-4985 
       87.45        71.41         6.71        48.89        14.93        31.27 
TCGA-BP-4986 TCGA-BP-4988 TCGA-BP-4989 TCGA-BP-4994 TCGA-BP-4998 TCGA-BP-5000 
       25.81        27.19         3.85        42.97        30.61        18.51 
TCGA-BP-5009 TCGA-CJ-4635 TCGA-CJ-4876 TCGA-CJ-4881 TCGA-CJ-4887 TCGA-CJ-4888 
       35.90        46.55        64.27        66.18        21.34        51.48 
TCGA-CJ-4891 TCGA-CJ-4895 TCGA-CJ-4900 TCGA-CJ-5672 TCGA-CJ-5676 TCGA-CJ-5677 
       26.89        39.45        41.88        72.00        84.66        25.71 
TCGA-CJ-5679 TCGA-CJ-5689 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6030 TCGA-CJ-6033 
       22.29         0.20        60.99        53.42        75.55         7.36 
TCGA-CW-5580 TCGA-CW-5590 TCGA-CW-5591 TCGA-CW-6087 TCGA-CZ-4854 TCGA-CZ-4857 
       64.57        35.34        74.63         1.35        46.16        47.08 
TCGA-CZ-4858 TCGA-CZ-4860 TCGA-CZ-5452 TCGA-CZ-5456 TCGA-CZ-5461 TCGA-CZ-5464 
       63.88         6.74        51.16        51.22        10.85        49.05 
TCGA-CZ-5466 TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5987 
       22.52         1.94        31.07        49.02        53.56        14.30 
TCGA-DV-5567 TCGA-DV-5568 TCGA-EU-5907 
       29.88        12.16         4.14 

subtype1 subtype2 subtype3 
    3.88     0.16     0.20 
subtype1 subtype2 subtype3 
   91.43   109.64    87.45 
subtype1 subtype2 subtype3 
  36.390   40.835   31.270 
[1] "3.9 - 91.4 (36.4)"  "0.2 - 109.6 (40.8)" "0.2 - 87.5 (31.3)" 
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [25] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [49] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [55] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [61] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [73] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [79] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [85] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [91] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
 [97] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[127] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[133] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[139] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[157] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[163] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[169] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[187] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[193] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[199] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[205] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[211] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [25] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [49] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [55] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [61] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [73] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [79] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [85] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [91] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
 [97] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[127] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[133] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[139] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[157] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[163] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[169] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[187] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[193] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[199] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[205] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[211] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [25] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [49] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [55] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [61] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [73] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [79] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [85] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [91] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
 [97] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[127] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[133] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[139] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[157] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[163] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[169] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[187] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[193] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[199] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[205] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[211] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
D11V2, continuous
D11V3, binary
          cls
clus        0  1
  subtype1 15 36
  subtype2 36 54
  subtype3 14 62
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15   36
  subtype2   36   54
  subtype3   14   62
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       15       36       14
  MALE         36       54       62
D11V4, continuous
D11V5, binary
          cls
clus        0  1
  subtype1 46  5
  subtype2 79 11
  subtype3 54 22
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   46    5
  subtype2   79   11
  subtype3   54   22
    clus
vv   subtype1 subtype2 subtype3
  M0       46       79       54
  M1        5       11       22
          vv
clus       N0 N1 NX
  subtype1 19  2 30
  subtype2 41  1 48
  subtype3 36  5 35
D11V6, multiclass
D11V7, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      34        3         8        6
  subtype2      45       11        22       12
  subtype3      26        9        18       23
D11V8, multiclass

Clustering(12) Variable = MIRSEQ_MATURE_CHIERARCHICAL
D12V1, survival
          sevent
clus2       0  1
  subtype1 32 26
  subtype2 74 19
  subtype3 44 21
subtype1 subtype2 subtype3 
      58       93       65 
subtype1 subtype2 subtype3 
      26       19       21 
$subtype1
TCGA-AK-3440 TCGA-AK-3458 TCGA-AK-3465 TCGA-B0-4712 TCGA-B0-4815 TCGA-B0-4821 
       57.34        38.40        12.13        43.96        49.02        40.41 
TCGA-B0-4834 TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-5075 TCGA-B0-5402 TCGA-B0-5697 
       68.71        40.70        42.48        19.99         0.33        37.32 
TCGA-B0-5701 TCGA-B0-5706 TCGA-B0-5707 TCGA-B2-5639 TCGA-B2-5641 TCGA-B4-5832 
       41.95        79.36        85.22         6.28         5.52         0.23 
TCGA-B4-5835 TCGA-B8-4621 TCGA-BP-4761 TCGA-BP-4771 TCGA-BP-4787 TCGA-BP-4986 
        0.53         7.07         5.98         5.29        15.75        25.81 
TCGA-BP-4994 TCGA-BP-5000 TCGA-BP-5009 TCGA-CJ-4635 TCGA-CJ-4875 TCGA-CJ-4881 
       42.97        18.51        35.90        46.55        77.36        66.18 
TCGA-CJ-4887 TCGA-CJ-4888 TCGA-CJ-4891 TCGA-CJ-4895 TCGA-CJ-5677 TCGA-CJ-5679 
       21.34        51.48        26.89        39.45        25.71        22.29 
TCGA-CJ-5680 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6030 TCGA-CW-5580 TCGA-CW-5581 
       25.25        60.99        53.42        75.55        64.57        92.02 
TCGA-CW-5590 TCGA-CW-5591 TCGA-CW-6090 TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4866 
       35.34        74.63        75.88        46.16        47.08        58.13 
TCGA-CZ-5452 TCGA-CZ-5458 TCGA-CZ-5466 TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5984 
       51.16        51.22        22.52         1.94        31.07        49.02 
TCGA-CZ-5987 TCGA-DV-5568 TCGA-DV-5573 TCGA-EU-5907 
       14.30        12.16        37.15         4.14 

$subtype2
TCGA-A3-3358 TCGA-B0-4706 TCGA-B0-4710 TCGA-B0-4811 TCGA-B0-4818 TCGA-B0-4833 
       42.97         0.85         0.16        39.32        14.01        78.41 
TCGA-B0-4852 TCGA-B0-5085 TCGA-B0-5399 TCGA-B0-5690 TCGA-B0-5692 TCGA-B0-5693 
       35.47        25.28         6.25        71.67        48.89        60.89 
TCGA-B0-5694 TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5700 
       15.42        34.26        31.04        71.70        79.73        12.33 
TCGA-B0-5703 TCGA-B0-5705 TCGA-B0-5710 TCGA-B0-5711 TCGA-B0-5712 TCGA-B0-5713 
        8.61       109.64        31.46        83.93        80.15        61.28 
TCGA-B0-5812 TCGA-B2-5633 TCGA-B2-5635 TCGA-B4-5377 TCGA-B4-5834 TCGA-B4-5836 
       76.41         7.04        10.36         9.57         1.25         4.64 
TCGA-B4-5844 TCGA-B8-4146 TCGA-B8-4153 TCGA-B8-5546 TCGA-B8-5549 TCGA-B8-5553 
        0.23        16.80        13.28         0.46         6.38         0.46 
TCGA-BP-4759 TCGA-BP-4961 TCGA-BP-4965 TCGA-BP-4969 TCGA-BP-4973 TCGA-BP-4974 
       76.41        63.62        61.51        58.98        45.50         7.23 
TCGA-BP-4975 TCGA-BP-4976 TCGA-BP-4977 TCGA-BP-4981 TCGA-BP-4982 TCGA-BP-4987 
       47.11        53.65        14.93        36.07        33.30        36.95 
TCGA-BP-4992 TCGA-BP-4995 TCGA-BP-5001 TCGA-BP-5007 TCGA-CJ-4870 TCGA-CJ-4876 
       16.44        45.07        38.70        37.48        49.22        64.27 
TCGA-CJ-4878 TCGA-CJ-4899 TCGA-CJ-5672 TCGA-CJ-5675 TCGA-CJ-5676 TCGA-CJ-5678 
       71.87        50.20        72.00        79.86        84.66        18.84 
TCGA-CJ-5681 TCGA-CJ-5682 TCGA-CJ-5683 TCGA-CJ-5684 TCGA-CJ-5686 TCGA-CJ-6032 
       18.12        61.91        62.10        73.32        67.00        83.77 
TCGA-CW-5583 TCGA-CW-5584 TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-5589 TCGA-CW-6093 
       81.83         5.39        85.78        73.18        78.15        79.89 
TCGA-CZ-4864 TCGA-CZ-5451 TCGA-CZ-5453 TCGA-CZ-5454 TCGA-CZ-5455 TCGA-CZ-5459 
       93.04        54.84         0.82        23.74        18.44        49.81 
TCGA-CZ-5460 TCGA-CZ-5461 TCGA-CZ-5462 TCGA-CZ-5463 TCGA-CZ-5465 TCGA-CZ-5467 
       47.01        10.85        10.22        21.76        45.27         2.40 
TCGA-CZ-5982 TCGA-CZ-5985 TCGA-CZ-5986 TCGA-CZ-5989 TCGA-DV-5565 TCGA-DV-5566 
       67.13        53.56        12.26        52.57        43.69        45.96 
TCGA-DV-5569 TCGA-EU-5904 TCGA-EU-5906 
       11.67        18.08         6.77 

$subtype3
TCGA-A3-3317 TCGA-A3-3387 TCGA-B0-4698 TCGA-B0-4700 TCGA-B0-4810 TCGA-B0-4816 
       49.02        20.25         1.38        65.06         8.75        35.54 
TCGA-B0-5080 TCGA-B0-5084 TCGA-B0-5088 TCGA-B0-5400 TCGA-B0-5691 TCGA-B0-5702 
        7.30         7.27        14.24        22.26        91.43        38.07 
TCGA-B0-5709 TCGA-B2-5636 TCGA-B4-5378 TCGA-B4-5838 TCGA-B4-5843 TCGA-B8-5545 
       77.49         8.48         5.75         5.46         0.36         8.15 
TCGA-B8-5550 TCGA-B8-5551 TCGA-B8-5552 TCGA-BP-4173 TCGA-BP-4331 TCGA-BP-4340 
        6.48         0.49         7.20        62.24        80.65        18.48 
TCGA-BP-4770 TCGA-BP-4789 TCGA-BP-4790 TCGA-BP-4797 TCGA-BP-4804 TCGA-BP-4807 
       10.82        48.95        36.53        36.39        47.97         6.94 
TCGA-BP-4959 TCGA-BP-4960 TCGA-BP-4967 TCGA-BP-4968 TCGA-BP-4970 TCGA-BP-4971 
       87.45        71.41         6.71        57.37        14.20        48.89 
TCGA-BP-4985 TCGA-BP-4988 TCGA-BP-4989 TCGA-BP-4998 TCGA-BP-5008 TCGA-CJ-4889 
       31.27        27.19         3.85        30.61        35.21        63.95 
TCGA-CJ-4890 TCGA-CJ-4900 TCGA-CJ-5671 TCGA-CJ-5689 TCGA-CJ-6031 TCGA-CJ-6033 
       68.55        41.88        63.85         0.20        62.63         7.36 
TCGA-CW-5588 TCGA-CW-6087 TCGA-CW-6088 TCGA-CW-6097 TCGA-CZ-4858 TCGA-CZ-4860 
       66.28         1.35        75.98        18.74        63.88         6.74 
TCGA-CZ-4863 TCGA-CZ-4865 TCGA-CZ-5456 TCGA-CZ-5457 TCGA-CZ-5464 TCGA-CZ-5988 
       55.56         5.42        51.22        50.86        49.05        22.78 
TCGA-DV-5567 TCGA-DV-5574 TCGA-DV-5575 TCGA-DV-5576 TCGA-EU-5905 
       29.88        23.77        33.04        23.90         3.88 

subtype1 subtype2 subtype3 
    0.23     0.16     0.20 
subtype1 subtype2 subtype3 
   92.02   109.64    91.43 
subtype1 subtype2 subtype3 
  38.925   42.970   29.880 
[1] "0.2 - 92.0 (38.9)"  "0.2 - 109.6 (43.0)" "0.2 - 91.4 (29.9)" 
  [1] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
 [25] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [43] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [73] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [85] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[109] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[115] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[121] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[133] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[139] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[151] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[169] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[193] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[199] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[205] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[211] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
  [1] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
 [25] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [43] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [73] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [85] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[109] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[115] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[121] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[133] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[139] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[151] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[169] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[193] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[199] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[205] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[211] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
  [1] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
 [25] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [43] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [73] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [85] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[109] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[115] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[121] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[133] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[139] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[151] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[169] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[193] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[199] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[205] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[211] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
D12V2, continuous
D12V3, binary
          cls
clus        0  1
  subtype1 12 47
  subtype2 36 57
  subtype3 17 48
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   12   47
  subtype2   36   57
  subtype3   17   48
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       12       36       17
  MALE         47       57       48
D12V4, continuous
D12V5, binary
          cls
clus        0  1
  subtype1 42 17
  subtype2 81 12
  subtype3 56  9
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   42   17
  subtype2   81   12
  subtype3   56    9
    clus
vv   subtype1 subtype2 subtype3
  M0       42       81       56
  M1       17       12        9
          vv
clus       N0 N1 NX
  subtype1 24  1 34
  subtype2 41  1 51
  subtype3 31  6 28
D12V6, multiclass
D12V7, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      24        4        13       18
  subtype2      47       13        21       12
  subtype3      34        6        14       11
D12V8, multiclass
                         V1.D                            V2 
              "Time to Death"                         "AGE" 
                           V3                            V4 
                     "GENDER" "KARNOFSKY.PERFORMANCE.SCORE" 
                           V5                            V6 
         "DISTANT.METASTASIS"       "LYMPH.NODE.METASTASIS" 
                           V7                            V8 
            "TUMOR.STAGECODE"       "NEOPLASM.DISEASESTAGE" 
> q(save="no")
