Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
ClinicalAnalysisAllGenes_new1.data.file	KIRC-TP.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_KIRC-TP.miRseq_Preprocess.Level_4.2013052300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	KIRC-TP.clin.merged.picked.clindata.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	KIRC-TP.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_KIRC-TP.miRseq_Preprocess.Level_4.2013052300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	table3.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	KIRC-TP.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_KIRC-TP.miRseq_Preprocess.Level_4.2013052300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	table5.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	KIRC-TP.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_KIRC-TP.miRseq_Preprocess.Level_4.2013052300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	table10.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	KIRC-TP.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_KIRC-TP.miRseq_Preprocess.Level_4.2013052300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	table7.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	KIRC-TP.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_KIRC-TP.miRseq_Preprocess.Level_4.2013052300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	table1.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	KIRC-TP.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_KIRC-TP.miRseq_Preprocess.Level_4.2013052300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	table14.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	KIRC-TP.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_KIRC-TP.miRseq_Preprocess.Level_4.2013052300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	table12.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	KIRC-TP.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_KIRC-TP.miRseq_Preprocess.Level_4.2013052300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	supp.table1.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	KIRC-TP.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_KIRC-TP.miRseq_Preprocess.Level_4.2013052300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	V1ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	KIRC-TP.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_KIRC-TP.miRseq_Preprocess.Level_4.2013052300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	V3ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	KIRC-TP.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_KIRC-TP.miRseq_Preprocess.Level_4.2013052300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	V7ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	KIRC-TP.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_KIRC-TP.miRseq_Preprocess.Level_4.2013052300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	V2ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	KIRC-TP.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_KIRC-TP.miRseq_Preprocess.Level_4.2013052300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	V6ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	KIRC-TP.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_KIRC-TP.miRseq_Preprocess.Level_4.2013052300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	V5ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	KIRC-TP.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_KIRC-TP.miRseq_Preprocess.Level_4.2013052300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	KIRC-TP.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_KIRC-TP.miRseq_Preprocess.Level_4.2013052300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	KIRC-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	KIRC-TP.clin.merged.picked.clindata.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	KIRC-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	table3.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	KIRC-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	table5.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	KIRC-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	table10.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	KIRC-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	table7.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	KIRC-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	table1.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	KIRC-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	table14.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	KIRC-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	table12.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	KIRC-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	supp.table1.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	KIRC-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	V1ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	KIRC-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	V3ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	KIRC-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	V7ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	KIRC-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	V2ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	KIRC-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	V6ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	KIRC-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	V5ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	KIRC-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	KIRC-TP.clin.merged.picked.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_miRseq_2013052300	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_KIRC-TP.Correlate_Clinical_vs_miRseq.Level_4.2013052300.0.0	yes
