
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.4.4139/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.4.4139/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/421249/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/KIRC-TP/3536964/KIRC-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=KIRC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=KIRC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=513, in cluster file=504, common to both=504
[1]  32 504
[1] "Amp Peak  1(1q24.1)"
[1] 3
      AMP PEAK  1(1Q24.1) CNV AMP PEAK  1(1Q24.1) WILD-TYPE 
                           61                           443 
      AMP PEAK  1(1Q24.1) CNV AMP PEAK  1(1Q24.1) WILD-TYPE 
                           61                           443 
[1] "Amp Peak  2(1q32.1)"
[1] 3
      AMP PEAK  2(1Q32.1) CNV AMP PEAK  2(1Q32.1) WILD-TYPE 
                           60                           444 
      AMP PEAK  2(1Q32.1) CNV AMP PEAK  2(1Q32.1) WILD-TYPE 
                           60                           444 
[1] "Amp Peak  3(3q26.32)"
[1] 3
      AMP PEAK  3(3Q26.32) CNV AMP PEAK  3(3Q26.32) WILD-TYPE 
                            82                            422 
      AMP PEAK  3(3Q26.32) CNV AMP PEAK  3(3Q26.32) WILD-TYPE 
                            82                            422 
[1] "Amp Peak  4(4q32.1)"
[1] 3
      AMP PEAK  4(4Q32.1) CNV AMP PEAK  4(4Q32.1) WILD-TYPE 
                           14                           490 
      AMP PEAK  4(4Q32.1) CNV AMP PEAK  4(4Q32.1) WILD-TYPE 
                           14                           490 
[1] "Amp Peak  5(5q35.1)"
[1] 3
      AMP PEAK  5(5Q35.1) CNV AMP PEAK  5(5Q35.1) WILD-TYPE 
                          316                           188 
      AMP PEAK  5(5Q35.1) CNV AMP PEAK  5(5Q35.1) WILD-TYPE 
                          316                           188 
[1] "Amp Peak  6(7q36.3)"
[1] 3
      AMP PEAK  6(7Q36.3) CNV AMP PEAK  6(7Q36.3) WILD-TYPE 
                          166                           338 
      AMP PEAK  6(7Q36.3) CNV AMP PEAK  6(7Q36.3) WILD-TYPE 
                          166                           338 
[1] "Amp Peak  7(8q24.22)"
[1] 3
      AMP PEAK  7(8Q24.22) CNV AMP PEAK  7(8Q24.22) WILD-TYPE 
                            75                            429 
      AMP PEAK  7(8Q24.22) CNV AMP PEAK  7(8Q24.22) WILD-TYPE 
                            75                            429 
[1] "Amp Peak  8(10p14)"
[1] 3
      AMP PEAK  8(10P14) CNV AMP PEAK  8(10P14) WILD-TYPE 
                          16                          488 
      AMP PEAK  8(10P14) CNV AMP PEAK  8(10P14) WILD-TYPE 
                          16                          488 
[1] "Amp Peak  9(17q24.3)"
[1] 3
      AMP PEAK  9(17Q24.3) CNV AMP PEAK  9(17Q24.3) WILD-TYPE 
                            37                            467 
      AMP PEAK  9(17Q24.3) CNV AMP PEAK  9(17Q24.3) WILD-TYPE 
                            37                            467 
[1] "Amp Peak 10(Xp22.2)"
[1] 3
      AMP PEAK 10(XP22.2) CNV AMP PEAK 10(XP22.2) WILD-TYPE 
                           36                           468 
      AMP PEAK 10(XP22.2) CNV AMP PEAK 10(XP22.2) WILD-TYPE 
                           36                           468 
[1] "Amp Peak 11(Xp11.4)"
[1] 3
      AMP PEAK 11(XP11.4) CNV AMP PEAK 11(XP11.4) WILD-TYPE 
                           37                           467 
      AMP PEAK 11(XP11.4) CNV AMP PEAK 11(XP11.4) WILD-TYPE 
                           37                           467 
[1] "Amp Peak 12(Xq11.2)"
[1] 3
      AMP PEAK 12(XQ11.2) CNV AMP PEAK 12(XQ11.2) WILD-TYPE 
                           33                           471 
      AMP PEAK 12(XQ11.2) CNV AMP PEAK 12(XQ11.2) WILD-TYPE 
                           33                           471 
[1] "Amp Peak 13(Xq28)"
[1] 3
      AMP PEAK 13(XQ28) CNV AMP PEAK 13(XQ28) WILD-TYPE 
                         39                         465 
      AMP PEAK 13(XQ28) CNV AMP PEAK 13(XQ28) WILD-TYPE 
                         39                         465 
[1] "Del Peak  1(1p36.23)"
[1] 3
      DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE 
                            98                            406 
      DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE 
                            98                            406 
[1] "Del Peak  2(1p31.1)"
[1] 3
      DEL PEAK  2(1P31.1) CNV DEL PEAK  2(1P31.1) WILD-TYPE 
                           72                           432 
      DEL PEAK  2(1P31.1) CNV DEL PEAK  2(1P31.1) WILD-TYPE 
                           72                           432 
[1] "Del Peak  3(1q43)"
[1] 3
      DEL PEAK  3(1Q43) CNV DEL PEAK  3(1Q43) WILD-TYPE 
                         38                         466 
      DEL PEAK  3(1Q43) CNV DEL PEAK  3(1Q43) WILD-TYPE 
                         38                         466 
[1] "Del Peak  4(2q37.3)"
[1] 3
      DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE 
                           50                           454 
      DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE 
                           50                           454 
[1] "Del Peak  5(3p25.3)"
[1] 3
      DEL PEAK  5(3P25.3) CNV DEL PEAK  5(3P25.3) WILD-TYPE 
                          441                            63 
      DEL PEAK  5(3P25.3) CNV DEL PEAK  5(3P25.3) WILD-TYPE 
                          441                            63 
[1] "Del Peak  6(3p21.32)"
[1] 3
      DEL PEAK  6(3P21.32) CNV DEL PEAK  6(3P21.32) WILD-TYPE 
                           444                             60 
      DEL PEAK  6(3P21.32) CNV DEL PEAK  6(3P21.32) WILD-TYPE 
                           444                             60 
[1] "Del Peak  7(3p12.3)"
[1] 3
      DEL PEAK  7(3P12.3) CNV DEL PEAK  7(3P12.3) WILD-TYPE 
                          320                           184 
      DEL PEAK  7(3P12.3) CNV DEL PEAK  7(3P12.3) WILD-TYPE 
                          320                           184 
[1] "Del Peak  8(3p12.2)"
[1] 3
      DEL PEAK  8(3P12.2) CNV DEL PEAK  8(3P12.2) WILD-TYPE 
                          292                           212 
      DEL PEAK  8(3P12.2) CNV DEL PEAK  8(3P12.2) WILD-TYPE 
                          292                           212 
[1] "Del Peak  9(3q11.2)"
[1] 3
      DEL PEAK  9(3Q11.2) CNV DEL PEAK  9(3Q11.2) WILD-TYPE 
                          154                           350 
      DEL PEAK  9(3Q11.2) CNV DEL PEAK  9(3Q11.2) WILD-TYPE 
                          154                           350 
[1] "Del Peak 10(3q21.3)"
[1] 3
      DEL PEAK 10(3Q21.3) CNV DEL PEAK 10(3Q21.3) WILD-TYPE 
                          105                           399 
      DEL PEAK 10(3Q21.3) CNV DEL PEAK 10(3Q21.3) WILD-TYPE 
                          105                           399 
[1] "Del Peak 11(4q34.3)"
[1] 3
      DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE 
                           76                           428 
      DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE 
                           76                           428 
[1] "Del Peak 12(6q26)"
[1] 3
      DEL PEAK 12(6Q26) CNV DEL PEAK 12(6Q26) WILD-TYPE 
                        145                         359 
      DEL PEAK 12(6Q26) CNV DEL PEAK 12(6Q26) WILD-TYPE 
                        145                         359 
[1] "Del Peak 13(6q26)"
[1] 3
      DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE 
                        145                         359 
      DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE 
                        145                         359 
[1] "Del Peak 14(8p23.2)"
[1] 3
      DEL PEAK 14(8P23.2) CNV DEL PEAK 14(8P23.2) WILD-TYPE 
                          148                           356 
      DEL PEAK 14(8P23.2) CNV DEL PEAK 14(8P23.2) WILD-TYPE 
                          148                           356 
[1] "Del Peak 15(9p23)"
[1] 3
      DEL PEAK 15(9P23) CNV DEL PEAK 15(9P23) WILD-TYPE 
                        147                         357 
      DEL PEAK 15(9P23) CNV DEL PEAK 15(9P23) WILD-TYPE 
                        147                         357 
[1] "Del Peak 16(9p21.3)"
[1] 3
      DEL PEAK 16(9P21.3) CNV DEL PEAK 16(9P21.3) WILD-TYPE 
                          154                           350 
      DEL PEAK 16(9P21.3) CNV DEL PEAK 16(9P21.3) WILD-TYPE 
                          154                           350 
[1] "Del Peak 17(10q23.31)"
[1] 3
      DEL PEAK 17(10Q23.31) CNV DEL PEAK 17(10Q23.31) WILD-TYPE 
                             90                             414 
      DEL PEAK 17(10Q23.31) CNV DEL PEAK 17(10Q23.31) WILD-TYPE 
                             90                             414 
[1] "Del Peak 18(13q13.3)"
[1] 3
      DEL PEAK 18(13Q13.3) CNV DEL PEAK 18(13Q13.3) WILD-TYPE 
                            76                            428 
      DEL PEAK 18(13Q13.3) CNV DEL PEAK 18(13Q13.3) WILD-TYPE 
                            76                            428 
[1] "Del Peak 19(14q31.1)"
[1] 3
      DEL PEAK 19(14Q31.1) CNV DEL PEAK 19(14Q31.1) WILD-TYPE 
                           222                            282 
      DEL PEAK 19(14Q31.1) CNV DEL PEAK 19(14Q31.1) WILD-TYPE 
                           222                            282 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 504 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 504 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=6, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1q24.1)
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) CNV AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                       3                            30
  CLUS_2                       6                            18
  CLUS_3                       1                            12
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) CNV AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                       1                            13
  CLUS_2                       3                            29
  CLUS_3                       6                            18
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) CNV AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                      46                           118
  CLUS_2                      12                           204
  CLUS_3                       3                           121
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) CNV AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                      10                            89
  CLUS_2                       9                           110
  CLUS_3                      10                            61
D1V5, multiclass
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) CNV AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                      18                           168
  CLUS_2                      22                           130
  CLUS_3                      14                            95
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) CNV AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                      18                           179
  CLUS_2                      36                           143
  CLUS_3                       3                            94
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) CNV AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                       2                            67
  CLUS_2                      21                           193
  CLUS_3                      34                           156
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) CNV AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                       4                           111
  CLUS_2                      18                           173
  CLUS_3                      36                           133
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) CNV AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                       3                            32
  CLUS_2                      24                           136
  CLUS_3                      31                           249
D1V11, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) CNV AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                       3                            47
  CLUS_2                       7                            82
  CLUS_3                      14                            60
D1V12, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) CNV AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                      11                            46
  CLUS_2                       7                            85
  CLUS_3                       6                            58

Clustering(2) Variable = Amp Peak  2(1q32.1)
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) CNV AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                       3                            30
  CLUS_2                       5                            19
  CLUS_3                       1                            12
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) CNV AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                       1                            13
  CLUS_2                       3                            29
  CLUS_3                       5                            19
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) CNV AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                      48                           116
  CLUS_2                       9                           207
  CLUS_3                       3                           121
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) CNV AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                      10                            89
  CLUS_2                       7                           112
  CLUS_3                      10                            61
D2V5, multiclass
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) CNV AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                      17                           169
  CLUS_2                      25                           127
  CLUS_3                      12                            97
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) CNV AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                      18                           179
  CLUS_2                      36                           143
  CLUS_3                       2                            95
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) CNV AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                       1                            68
  CLUS_2                      22                           192
  CLUS_3                      33                           157
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) CNV AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                       4                           111
  CLUS_2                      17                           174
  CLUS_3                      36                           133
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) CNV AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                       2                            33
  CLUS_2                      25                           135
  CLUS_3                      30                           250
D2V11, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) CNV AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                       3                            47
  CLUS_2                       7                            82
  CLUS_3                      15                            59
D2V12, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) CNV AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                      12                            45
  CLUS_2                       7                            85
  CLUS_3                       6                            58

Clustering(3) Variable = Amp Peak  3(3q26.32)
D3V1, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) CNV AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                        2                             31
  CLUS_2                        7                             17
  CLUS_3                        1                             12
D3V2, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) CNV AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                        1                             13
  CLUS_2                        2                             30
  CLUS_3                        7                             17
D3V3, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) CNV AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                       54                            110
  CLUS_2                       11                            205
  CLUS_3                       17                            107
D3V4, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) CNV AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                       26                             73
  CLUS_2                        6                            113
  CLUS_3                       15                             56
D3V5, multiclass
D3V6, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) CNV AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                       17                            169
  CLUS_2                       24                            128
  CLUS_3                       34                             75
D3V7, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) CNV AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                       18                            179
  CLUS_2                       51                            128
  CLUS_3                       11                             86
D3V8, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) CNV AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                        7                             62
  CLUS_2                       18                            196
  CLUS_3                       55                            135
D3V9, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) CNV AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                       12                            103
  CLUS_2                       15                            176
  CLUS_3                       50                            119
D3V10, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) CNV AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                        9                             26
  CLUS_2                       37                            123
  CLUS_3                       31                            249
D3V11, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) CNV AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                        6                             44
  CLUS_2                        8                             81
  CLUS_3                       22                             52
D3V12, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) CNV AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                       10                             47
  CLUS_2                       11                             81
  CLUS_3                       15                             49

Clustering(4) Variable = Amp Peak  4(4q32.1)
D4V1, multiclass
[1] "Remove cluster labels:"  "AMP PEAK  4(4Q32.1) CNV"
clus
      AMP PEAK  4(4Q32.1) CNV AMP PEAK  4(4Q32.1) WILD-TYPE 
                            2                            68 
                   TCGA-A3-3306                    TCGA-A3-3307 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3308                    TCGA-A3-3311 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3313                    TCGA-A3-3316 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3317                    TCGA-A3-3319 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3320                    TCGA-A3-3322 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3323                    TCGA-A3-3324 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3325                    TCGA-A3-3326 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3331                    TCGA-A3-3335 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3336                    TCGA-A3-3343 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3346                    TCGA-A3-3347 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3349                    TCGA-A3-3351 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3352                    TCGA-A3-3359 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3362                    TCGA-A3-3363 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3365                    TCGA-A3-3372 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3378                    TCGA-A3-3380 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3382                    TCGA-A3-3383 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3426                    TCGA-AK-3427 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3440                    TCGA-AK-3443 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3444                    TCGA-AK-3447 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3453                    TCGA-AK-3455 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3456                    TCGA-AK-3465 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AS-3777                    TCGA-AS-3778 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B2-3923                    TCGA-B2-3924 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B2-4098                    TCGA-B2-4099 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B2-4102                    TCGA-B8-4148 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B8-4151                    TCGA-B8-4154 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B8-4619                    TCGA-B8-4620 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-BP-4161                    TCGA-BP-4162 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-BP-4163                    TCGA-BP-4164 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-BP-4167                    TCGA-CJ-4634 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-CJ-4636                    TCGA-CJ-4637 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-CJ-4638                    TCGA-CJ-4639 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-CJ-4640                    TCGA-CJ-4641 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-CJ-4643                    TCGA-CJ-4644 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
D4V2, multiclass
[1] "Remove cluster labels:"  "AMP PEAK  4(4Q32.1) CNV"
clus
      AMP PEAK  4(4Q32.1) CNV AMP PEAK  4(4Q32.1) WILD-TYPE 
                            2                            68 
                   TCGA-A3-3306                    TCGA-A3-3307 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3308                    TCGA-A3-3311 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3313                    TCGA-A3-3316 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3317                    TCGA-A3-3319 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3320                    TCGA-A3-3322 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3323                    TCGA-A3-3324 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3325                    TCGA-A3-3326 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3331                    TCGA-A3-3335 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3336                    TCGA-A3-3343 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3346                    TCGA-A3-3347 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3349                    TCGA-A3-3351 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3352                    TCGA-A3-3359 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3362                    TCGA-A3-3363 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3365                    TCGA-A3-3372 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3378                    TCGA-A3-3380 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3382                    TCGA-A3-3383 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3426                    TCGA-AK-3427 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3440                    TCGA-AK-3443 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3444                    TCGA-AK-3447 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3453                    TCGA-AK-3455 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3456                    TCGA-AK-3465 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AS-3777                    TCGA-AS-3778 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B2-3923                    TCGA-B2-3924 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B2-4098                    TCGA-B2-4099 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B2-4102                    TCGA-B8-4148 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B8-4151                    TCGA-B8-4154 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B8-4619                    TCGA-B8-4620 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-BP-4161                    TCGA-BP-4162 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-BP-4163                    TCGA-BP-4164 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-BP-4167                    TCGA-CJ-4634 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-CJ-4636                    TCGA-CJ-4637 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-CJ-4638                    TCGA-CJ-4639 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-CJ-4640                    TCGA-CJ-4641 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-CJ-4643                    TCGA-CJ-4644 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
D4V3, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) CNV AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                       6                           158
  CLUS_2                       4                           212
  CLUS_3                       4                           120
D4V4, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) CNV AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                       2                            97
  CLUS_2                       4                           115
  CLUS_3                       0                            71
D4V5, multiclass
D4V6, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) CNV AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                       3                           183
  CLUS_2                       3                           149
  CLUS_3                       4                           105
D4V7, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) CNV AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                       2                           195
  CLUS_2                       6                           173
  CLUS_3                       5                            92
D4V8, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) CNV AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                       3                            66
  CLUS_2                       4                           210
  CLUS_3                       6                           184
D4V9, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) CNV AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                       3                           112
  CLUS_2                       1                           190
  CLUS_3                      10                           159
D4V10, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) CNV AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                       3                            32
  CLUS_2                       6                           154
  CLUS_3                       5                           275
D4V11, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) CNV AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                       0                            50
  CLUS_2                       0                            89
  CLUS_3                       3                            71
D4V12, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) CNV AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                       1                            56
  CLUS_2                       1                            91
  CLUS_3                       1                            63

Clustering(5) Variable = Amp Peak  5(5q35.1)
D5V1, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) CNV AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                      20                            13
  CLUS_2                      14                            10
  CLUS_3                       2                            11
D5V2, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) CNV AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                       2                            12
  CLUS_2                      20                            12
  CLUS_3                      14                            10
D5V3, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) CNV AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                     113                            51
  CLUS_2                     140                            76
  CLUS_3                      63                            61
D5V4, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) CNV AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                      63                            36
  CLUS_2                      74                            45
  CLUS_3                      43                            28
D5V5, multiclass
D5V6, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) CNV AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                     121                            65
  CLUS_2                     109                            43
  CLUS_3                      56                            53
D5V7, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) CNV AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                     133                            64
  CLUS_2                     118                            61
  CLUS_3                      49                            48
D5V8, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) CNV AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                      30                            39
  CLUS_2                     148                            66
  CLUS_3                     122                            68
D5V9, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) CNV AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                      69                            46
  CLUS_2                     128                            63
  CLUS_3                     105                            64
D5V10, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) CNV AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                       9                            26
  CLUS_2                     101                            59
  CLUS_3                     192                            88
D5V11, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) CNV AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                      33                            17
  CLUS_2                      60                            29
  CLUS_3                      48                            26
D5V12, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) CNV AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                      34                            23
  CLUS_2                      66                            26
  CLUS_3                      41                            23

Clustering(6) Variable = Amp Peak  6(7q36.3)
D6V1, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) CNV AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                       9                            24
  CLUS_2                       9                            15
  CLUS_3                       5                             8
D6V2, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) CNV AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                       5                             9
  CLUS_2                       9                            23
  CLUS_3                       9                            15
D6V3, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) CNV AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                      86                            78
  CLUS_2                      34                           182
  CLUS_3                      46                            78
D6V4, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) CNV AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                      38                            61
  CLUS_2                      27                            92
  CLUS_3                      18                            53
D6V5, multiclass
D6V6, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) CNV AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                      48                           138
  CLUS_2                      56                            96
  CLUS_3                      44                            65
D6V7, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) CNV AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                      48                           149
  CLUS_2                      80                            99
  CLUS_3                      29                            68
D6V8, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) CNV AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                      18                            51
  CLUS_2                      59                           155
  CLUS_3                      80                           110
D6V9, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) CNV AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                      36                            79
  CLUS_2                      54                           137
  CLUS_3                      70                            99
D6V10, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) CNV AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                      13                            22
  CLUS_2                      63                            97
  CLUS_3                      84                           196
D6V11, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) CNV AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                      17                            33
  CLUS_2                      22                            67
  CLUS_3                      36                            38
D6V12, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) CNV AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                      25                            32
  CLUS_2                      23                            69
  CLUS_3                      27                            37

Clustering(7) Variable = Amp Peak  7(8q24.22)
D7V1, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) CNV AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                        1                             32
  CLUS_2                        3                             21
  CLUS_3                        2                             11
D7V2, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) CNV AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                        2                             12
  CLUS_2                        1                             31
  CLUS_3                        3                             21
D7V3, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) CNV AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                       57                            107
  CLUS_2                        2                            214
  CLUS_3                       16                            108
D7V4, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) CNV AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                       30                             69
  CLUS_2                        6                            113
  CLUS_3                       13                             58
D7V5, multiclass
D7V6, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) CNV AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                       19                            167
  CLUS_2                       22                            130
  CLUS_3                       27                             82
D7V7, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) CNV AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                        8                            189
  CLUS_2                       53                            126
  CLUS_3                        8                             89
D7V8, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) CNV AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                        3                             66
  CLUS_2                       12                            202
  CLUS_3                       54                            136
D7V9, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) CNV AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                       13                            102
  CLUS_2                       10                            181
  CLUS_3                       48                            121
D7V10, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) CNV AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                        5                             30
  CLUS_2                       40                            120
  CLUS_3                       26                            254
D7V11, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) CNV AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                        2                             48
  CLUS_2                        4                             85
  CLUS_3                       23                             51
D7V12, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) CNV AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                       16                             41
  CLUS_2                        4                             88
  CLUS_3                        9                             55

Clustering(8) Variable = Amp Peak  8(10p14)
D8V1, multiclass
        clus
vv       AMP PEAK  8(10P14) CNV AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                      0                           33
  CLUS_2                      2                           22
  CLUS_3                      1                           12
D8V2, multiclass
        clus
vv       AMP PEAK  8(10P14) CNV AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                      1                           13
  CLUS_2                      0                           32
  CLUS_3                      2                           22
D8V3, multiclass
        clus
vv       AMP PEAK  8(10P14) CNV AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                     11                          153
  CLUS_2                      1                          215
  CLUS_3                      4                          120
D8V4, multiclass
        clus
vv       AMP PEAK  8(10P14) CNV AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                      3                           96
  CLUS_2                      2                          117
  CLUS_3                      5                           66
D8V5, multiclass
D8V6, multiclass
        clus
vv       AMP PEAK  8(10P14) CNV AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                      4                          182
  CLUS_2                      3                          149
  CLUS_3                      8                          101
D8V7, multiclass
        clus
vv       AMP PEAK  8(10P14) CNV AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                      2                          195
  CLUS_2                     10                          169
  CLUS_3                      4                           93
D8V8, multiclass
        clus
vv       AMP PEAK  8(10P14) CNV AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                      1                           68
  CLUS_2                      2                          212
  CLUS_3                     13                          177
D8V9, multiclass
        clus
vv       AMP PEAK  8(10P14) CNV AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                      4                          111
  CLUS_2                      3                          188
  CLUS_3                      9                          160
D8V10, multiclass
        clus
vv       AMP PEAK  8(10P14) CNV AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                      1                           34
  CLUS_2                      9                          151
  CLUS_3                      6                          274
D8V11, multiclass
        clus
vv       AMP PEAK  8(10P14) CNV AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                      2                           48
  CLUS_2                      2                           87
  CLUS_3                      2                           72
D8V12, multiclass
        clus
vv       AMP PEAK  8(10P14) CNV AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                      2                           55
  CLUS_2                      2                           90
  CLUS_3                      2                           62

Clustering(9) Variable = Amp Peak  9(17q24.3)
D9V1, multiclass
        clus
vv       AMP PEAK  9(17Q24.3) CNV AMP PEAK  9(17Q24.3) WILD-TYPE
  CLUS_1                        1                             32
  CLUS_2                        1                             23
  CLUS_3                        3                             10
D9V2, multiclass
        clus
vv       AMP PEAK  9(17Q24.3) CNV AMP PEAK  9(17Q24.3) WILD-TYPE
  CLUS_1                        3                             11
  CLUS_2                        1                             31
  CLUS_3                        1                             23
D9V3, multiclass
        clus
vv       AMP PEAK  9(17Q24.3) CNV AMP PEAK  9(17Q24.3) WILD-TYPE
  CLUS_1                       21                            143
  CLUS_2                        7                            209
  CLUS_3                        9                            115
D9V4, multiclass
        clus
vv       AMP PEAK  9(17Q24.3) CNV AMP PEAK  9(17Q24.3) WILD-TYPE
  CLUS_1                       10                             89
  CLUS_2                        6                            113
  CLUS_3                        8                             63
D9V5, multiclass
D9V6, multiclass
        clus
vv       AMP PEAK  9(17Q24.3) CNV AMP PEAK  9(17Q24.3) WILD-TYPE
  CLUS_1                        7                            179
  CLUS_2                       13                            139
  CLUS_3                       12                             97
D9V7, multiclass
        clus
vv       AMP PEAK  9(17Q24.3) CNV AMP PEAK  9(17Q24.3) WILD-TYPE
  CLUS_1                       10                            187
  CLUS_2                       17                            162
  CLUS_3                        9                             88
D9V8, multiclass
        clus
vv       AMP PEAK  9(17Q24.3) CNV AMP PEAK  9(17Q24.3) WILD-TYPE
  CLUS_1                        9                             60
  CLUS_2                        9                            205
  CLUS_3                       18                            172
D9V9, multiclass
        clus
vv       AMP PEAK  9(17Q24.3) CNV AMP PEAK  9(17Q24.3) WILD-TYPE
  CLUS_1                       10                            105
  CLUS_2                        9                            182
  CLUS_3                       17                            152
D9V10, multiclass
        clus
vv       AMP PEAK  9(17Q24.3) CNV AMP PEAK  9(17Q24.3) WILD-TYPE
  CLUS_1                        5                             30
  CLUS_2                       16                            144
  CLUS_3                       15                            265
D9V11, multiclass
        clus
vv       AMP PEAK  9(17Q24.3) CNV AMP PEAK  9(17Q24.3) WILD-TYPE
  CLUS_1                        2                             48
  CLUS_2                        1                             88
  CLUS_3                        9                             65
D9V12, multiclass
        clus
vv       AMP PEAK  9(17Q24.3) CNV AMP PEAK  9(17Q24.3) WILD-TYPE
  CLUS_1                        5                             52
  CLUS_2                        1                             91
  CLUS_3                        6                             58

Clustering(10) Variable = Amp Peak 10(Xp22.2)
D10V1, multiclass
        clus
vv       AMP PEAK 10(XP22.2) CNV AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                       2                            31
  CLUS_2                       2                            22
  CLUS_3                       1                            12
D10V2, multiclass
        clus
vv       AMP PEAK 10(XP22.2) CNV AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                       1                            13
  CLUS_2                       2                            30
  CLUS_3                       2                            22
D10V3, multiclass
        clus
vv       AMP PEAK 10(XP22.2) CNV AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                      21                           143
  CLUS_2                       8                           208
  CLUS_3                       7                           117
D10V4, multiclass
        clus
vv       AMP PEAK 10(XP22.2) CNV AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                       9                            90
  CLUS_2                       3                           116
  CLUS_3                       3                            68
D10V5, multiclass
D10V6, multiclass
        clus
vv       AMP PEAK 10(XP22.2) CNV AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                       7                           179
  CLUS_2                       8                           144
  CLUS_3                      14                            95
D10V7, multiclass
        clus
vv       AMP PEAK 10(XP22.2) CNV AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                       8                           189
  CLUS_2                      16                           163
  CLUS_3                       9                            88
D10V8, multiclass
        clus
vv       AMP PEAK 10(XP22.2) CNV AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                       5                            64
  CLUS_2                      10                           204
  CLUS_3                      18                           172
D10V9, multiclass
        clus
vv       AMP PEAK 10(XP22.2) CNV AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                       7                           108
  CLUS_2                       8                           183
  CLUS_3                      20                           149
D10V10, multiclass
        clus
vv       AMP PEAK 10(XP22.2) CNV AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                       3                            32
  CLUS_2                      14                           146
  CLUS_3                      18                           262
D10V11, multiclass
        clus
vv       AMP PEAK 10(XP22.2) CNV AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                       4                            46
  CLUS_2                       2                            87
  CLUS_3                       8                            66
D10V12, multiclass
        clus
vv       AMP PEAK 10(XP22.2) CNV AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                       4                            53
  CLUS_2                       4                            88
  CLUS_3                       6                            58

Clustering(11) Variable = Amp Peak 11(Xp11.4)
D11V1, multiclass
        clus
vv       AMP PEAK 11(XP11.4) CNV AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                       3                            30
  CLUS_2                       1                            23
  CLUS_3                       1                            12
D11V2, multiclass
        clus
vv       AMP PEAK 11(XP11.4) CNV AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                       1                            13
  CLUS_2                       3                            29
  CLUS_3                       1                            23
D11V3, multiclass
        clus
vv       AMP PEAK 11(XP11.4) CNV AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                      22                           142
  CLUS_2                       8                           208
  CLUS_3                       7                           117
D11V4, multiclass
        clus
vv       AMP PEAK 11(XP11.4) CNV AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                      12                            87
  CLUS_2                       4                           115
  CLUS_3                       3                            68
D11V5, multiclass
D11V6, multiclass
        clus
vv       AMP PEAK 11(XP11.4) CNV AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                       8                           178
  CLUS_2                       6                           146
  CLUS_3                      15                            94
D11V7, multiclass
        clus
vv       AMP PEAK 11(XP11.4) CNV AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                       8                           189
  CLUS_2                      17                           162
  CLUS_3                      11                            86
D11V8, multiclass
        clus
vv       AMP PEAK 11(XP11.4) CNV AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                       5                            64
  CLUS_2                      10                           204
  CLUS_3                      21                           169
D11V9, multiclass
        clus
vv       AMP PEAK 11(XP11.4) CNV AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                       7                           108
  CLUS_2                       8                           183
  CLUS_3                      20                           149
D11V10, multiclass
        clus
vv       AMP PEAK 11(XP11.4) CNV AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                       3                            32
  CLUS_2                      15                           145
  CLUS_3                      17                           263
D11V11, multiclass
        clus
vv       AMP PEAK 11(XP11.4) CNV AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                       4                            46
  CLUS_2                       2                            87
  CLUS_3                       8                            66
D11V12, multiclass
        clus
vv       AMP PEAK 11(XP11.4) CNV AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                       4                            53
  CLUS_2                       4                            88
  CLUS_3                       6                            58

Clustering(12) Variable = Amp Peak 12(Xq11.2)
D12V1, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) CNV AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                       2                            31
  CLUS_2                       0                            24
  CLUS_3                       2                            11
D12V2, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) CNV AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                       2                            12
  CLUS_2                       2                            30
  CLUS_3                       0                            24
D12V3, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) CNV AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                      16                           148
  CLUS_2                       8                           208
  CLUS_3                       9                           115
D12V4, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) CNV AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                       8                            91
  CLUS_2                       3                           116
  CLUS_3                       3                            68
D12V5, multiclass
D12V6, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) CNV AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                       8                           178
  CLUS_2                       7                           145
  CLUS_3                      12                            97
D12V7, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) CNV AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                       9                           188
  CLUS_2                      12                           167
  CLUS_3                      11                            86
D12V8, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) CNV AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                       6                            63
  CLUS_2                      11                           203
  CLUS_3                      15                           175
D12V9, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) CNV AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                       6                           109
  CLUS_2                       8                           183
  CLUS_3                      17                           152
D12V10, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) CNV AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                       4                            31
  CLUS_2                      13                           147
  CLUS_3                      14                           266
D12V11, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) CNV AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                       3                            47
  CLUS_2                       2                            87
  CLUS_3                       7                            67
D12V12, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) CNV AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                       4                            53
  CLUS_2                       3                            89
  CLUS_3                       5                            59

Clustering(13) Variable = Amp Peak 13(Xq28)
D13V1, multiclass
        clus
vv       AMP PEAK 13(XQ28) CNV AMP PEAK 13(XQ28) WILD-TYPE
  CLUS_1                     2                          31
  CLUS_2                     1                          23
  CLUS_3                     2                          11
D13V2, multiclass
        clus
vv       AMP PEAK 13(XQ28) CNV AMP PEAK 13(XQ28) WILD-TYPE
  CLUS_1                     2                          12
  CLUS_2                     2                          30
  CLUS_3                     1                          23
D13V3, multiclass
        clus
vv       AMP PEAK 13(XQ28) CNV AMP PEAK 13(XQ28) WILD-TYPE
  CLUS_1                    18                         146
  CLUS_2                    13                         203
  CLUS_3                     8                         116
D13V4, multiclass
        clus
vv       AMP PEAK 13(XQ28) CNV AMP PEAK 13(XQ28) WILD-TYPE
  CLUS_1                    10                          89
  CLUS_2                     8                         111
  CLUS_3                     5                          66
D13V5, multiclass
D13V6, multiclass
        clus
vv       AMP PEAK 13(XQ28) CNV AMP PEAK 13(XQ28) WILD-TYPE
  CLUS_1                     8                         178
  CLUS_2                    12                         140
  CLUS_3                    14                          95
D13V7, multiclass
        clus
vv       AMP PEAK 13(XQ28) CNV AMP PEAK 13(XQ28) WILD-TYPE
  CLUS_1                     9                         188
  CLUS_2                    15                         164
  CLUS_3                    11                          86
D13V8, multiclass
        clus
vv       AMP PEAK 13(XQ28) CNV AMP PEAK 13(XQ28) WILD-TYPE
  CLUS_1                     4                          65
  CLUS_2                    11                         203
  CLUS_3                    20                         170
D13V9, multiclass
        clus
vv       AMP PEAK 13(XQ28) CNV AMP PEAK 13(XQ28) WILD-TYPE
  CLUS_1                    10                         105
  CLUS_2                    10                         181
  CLUS_3                    16                         153
D13V10, multiclass
        clus
vv       AMP PEAK 13(XQ28) CNV AMP PEAK 13(XQ28) WILD-TYPE
  CLUS_1                     3                          32
  CLUS_2                    17                         143
  CLUS_3                    16                         264
D13V11, multiclass
        clus
vv       AMP PEAK 13(XQ28) CNV AMP PEAK 13(XQ28) WILD-TYPE
  CLUS_1                     6                          44
  CLUS_2                     2                          87
  CLUS_3                     8                          66
D13V12, multiclass
        clus
vv       AMP PEAK 13(XQ28) CNV AMP PEAK 13(XQ28) WILD-TYPE
  CLUS_1                     4                          53
  CLUS_2                     3                          89
  CLUS_3                     9                          55

Clustering(14) Variable = Del Peak  1(1p36.23)
D14V1, multiclass
        clus
vv       DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                        2                             31
  CLUS_2                        8                             16
  CLUS_3                        8                              5
D14V2, multiclass
        clus
vv       DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                        9                              5
  CLUS_2                        2                             30
  CLUS_3                        7                             17
D14V3, multiclass
        clus
vv       DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                       52                            112
  CLUS_2                       12                            204
  CLUS_3                       34                             90
D14V4, multiclass
        clus
vv       DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                       22                             77
  CLUS_2                       15                            104
  CLUS_3                       19                             52
D14V5, multiclass
D14V6, multiclass
        clus
vv       DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                       20                            166
  CLUS_2                       35                            117
  CLUS_3                       32                             77
D14V7, multiclass
        clus
vv       DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                       24                            173
  CLUS_2                       53                            126
  CLUS_3                       17                             80
D14V8, multiclass
        clus
vv       DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                       18                             51
  CLUS_2                       26                            188
  CLUS_3                       50                            140
D14V9, multiclass
        clus
vv       DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                       22                             93
  CLUS_2                       20                            171
  CLUS_3                       56                            113
D14V10, multiclass
        clus
vv       DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                       20                             15
  CLUS_2                       42                            118
  CLUS_3                       36                            244
D14V11, multiclass
        clus
vv       DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                       10                             40
  CLUS_2                       11                             78
  CLUS_3                       24                             50
D14V12, multiclass
        clus
vv       DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                       20                             37
  CLUS_2                        9                             83
  CLUS_3                       16                             48

Clustering(15) Variable = Del Peak  2(1p31.1)
D15V1, multiclass
        clus
vv       DEL PEAK  2(1P31.1) CNV DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                       2                            31
  CLUS_2                       5                            19
  CLUS_3                       7                             6
D15V2, multiclass
        clus
vv       DEL PEAK  2(1P31.1) CNV DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                       8                             6
  CLUS_2                       2                            30
  CLUS_3                       4                            20
D15V3, multiclass
        clus
vv       DEL PEAK  2(1P31.1) CNV DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                      38                           126
  CLUS_2                       8                           208
  CLUS_3                      26                            98
D15V4, multiclass
        clus
vv       DEL PEAK  2(1P31.1) CNV DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                      19                            80
  CLUS_2                       9                           110
  CLUS_3                      11                            60
D15V5, multiclass
D15V6, multiclass
        clus
vv       DEL PEAK  2(1P31.1) CNV DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                      17                           169
  CLUS_2                      24                           128
  CLUS_3                      24                            85
D15V7, multiclass
        clus
vv       DEL PEAK  2(1P31.1) CNV DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                      20                           177
  CLUS_2                      33                           146
  CLUS_3                      16                            81
D15V8, multiclass
        clus
vv       DEL PEAK  2(1P31.1) CNV DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                      17                            52
  CLUS_2                      21                           193
  CLUS_3                      31                           159
D15V9, multiclass
        clus
vv       DEL PEAK  2(1P31.1) CNV DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                      12                           103
  CLUS_2                      18                           173
  CLUS_3                      42                           127
D15V10, multiclass
        clus
vv       DEL PEAK  2(1P31.1) CNV DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                      17                            18
  CLUS_2                      22                           138
  CLUS_3                      33                           247
D15V11, multiclass
        clus
vv       DEL PEAK  2(1P31.1) CNV DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                       4                            46
  CLUS_2                      11                            78
  CLUS_3                      16                            58
D15V12, multiclass
        clus
vv       DEL PEAK  2(1P31.1) CNV DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                      16                            41
  CLUS_2                       7                            85
  CLUS_3                       8                            56

Clustering(16) Variable = Del Peak  3(1q43)
D16V1, multiclass
        clus
vv       DEL PEAK  3(1Q43) CNV DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                     2                          31
  CLUS_2                     1                          23
  CLUS_3                     5                           8
D16V2, multiclass
        clus
vv       DEL PEAK  3(1Q43) CNV DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                     5                           9
  CLUS_2                     2                          30
  CLUS_3                     1                          23
D16V3, multiclass
        clus
vv       DEL PEAK  3(1Q43) CNV DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                    12                         152
  CLUS_2                     5                         211
  CLUS_3                    21                         103
D16V4, multiclass
        clus
vv       DEL PEAK  3(1Q43) CNV DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                     8                          91
  CLUS_2                     9                         110
  CLUS_3                     3                          68
D16V5, multiclass
D16V6, multiclass
        clus
vv       DEL PEAK  3(1Q43) CNV DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                    10                         176
  CLUS_2                     8                         144
  CLUS_3                    16                          93
D16V7, multiclass
        clus
vv       DEL PEAK  3(1Q43) CNV DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                    15                         182
  CLUS_2                     8                         171
  CLUS_3                    15                          82
D16V8, multiclass
        clus
vv       DEL PEAK  3(1Q43) CNV DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                    13                          56
  CLUS_2                    14                         200
  CLUS_3                    11                         179
D16V9, multiclass
        clus
vv       DEL PEAK  3(1Q43) CNV DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                     6                         109
  CLUS_2                    16                         175
  CLUS_3                    16                         153
D16V10, multiclass
        clus
vv       DEL PEAK  3(1Q43) CNV DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                    13                          22
  CLUS_2                     9                         151
  CLUS_3                    16                         264
D16V11, multiclass
        clus
vv       DEL PEAK  3(1Q43) CNV DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                     3                          47
  CLUS_2                     9                          80
  CLUS_3                     5                          69
D16V12, multiclass
        clus
vv       DEL PEAK  3(1Q43) CNV DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                     6                          51
  CLUS_2                     6                          86
  CLUS_3                     5                          59

Clustering(17) Variable = Del Peak  4(2q37.3)
D17V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                       1                            32
  CLUS_2                       4                            20
  CLUS_3                       6                             7
D17V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                       6                             8
  CLUS_2                       1                            31
  CLUS_3                       4                            20
D17V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                      18                           146
  CLUS_2                      20                           196
  CLUS_3                      12                           112
D17V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                      11                            88
  CLUS_2                      12                           107
  CLUS_3                       6                            65
D17V5, multiclass
D17V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                      16                           170
  CLUS_2                      11                           141
  CLUS_3                      13                            96
D17V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                       7                           190
  CLUS_2                      19                           160
  CLUS_3                      18                            79
D17V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                      12                            57
  CLUS_2                       8                           206
  CLUS_3                      24                           166
D17V9, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                      13                           102
  CLUS_2                      11                           180
  CLUS_3                      22                           147
D17V10, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                      12                            23
  CLUS_2                      18                           142
  CLUS_3                      16                           264
D17V11, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                       4                            46
  CLUS_2                       6                            83
  CLUS_3                       9                            65
D17V12, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                      12                            45
  CLUS_2                       5                            87
  CLUS_3                       2                            62

Clustering(18) Variable = Del Peak  5(3p25.3)
D18V1, multiclass
        clus
vv       DEL PEAK  5(3P25.3) CNV DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                      32                             1
  CLUS_2                      22                             2
  CLUS_3                       3                            10
D18V2, multiclass
        clus
vv       DEL PEAK  5(3P25.3) CNV DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                       3                            11
  CLUS_2                      31                             1
  CLUS_3                      23                             1
D18V3, multiclass
        clus
vv       DEL PEAK  5(3P25.3) CNV DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                     158                             6
  CLUS_2                     214                             2
  CLUS_3                      69                            55
D18V4, multiclass
        clus
vv       DEL PEAK  5(3P25.3) CNV DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                      94                             5
  CLUS_2                     109                            10
  CLUS_3                      53                            18
D18V5, multiclass
D18V6, multiclass
        clus
vv       DEL PEAK  5(3P25.3) CNV DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                     167                            19
  CLUS_2                     140                            12
  CLUS_3                      89                            20
D18V7, multiclass
        clus
vv       DEL PEAK  5(3P25.3) CNV DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                     190                             7
  CLUS_2                     160                            19
  CLUS_3                      63                            34
D18V8, multiclass
        clus
vv       DEL PEAK  5(3P25.3) CNV DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                      37                            32
  CLUS_2                     206                             8
  CLUS_3                     170                            20
D18V9, multiclass
        clus
vv       DEL PEAK  5(3P25.3) CNV DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                      96                            19
  CLUS_2                     182                             9
  CLUS_3                     137                            32
D18V10, multiclass
        clus
vv       DEL PEAK  5(3P25.3) CNV DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                      15                            20
  CLUS_2                     133                            27
  CLUS_3                     267                            13
D18V11, multiclass
        clus
vv       DEL PEAK  5(3P25.3) CNV DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                      39                            11
  CLUS_2                      83                             6
  CLUS_3                      62                            12
D18V12, multiclass
        clus
vv       DEL PEAK  5(3P25.3) CNV DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                      49                             8
  CLUS_2                      88                             4
  CLUS_3                      47                            17

Clustering(19) Variable = Del Peak  6(3p21.32)
D19V1, multiclass
        clus
vv       DEL PEAK  6(3P21.32) CNV DEL PEAK  6(3P21.32) WILD-TYPE
  CLUS_1                       32                              1
  CLUS_2                       22                              2
  CLUS_3                        3                             10
D19V2, multiclass
        clus
vv       DEL PEAK  6(3P21.32) CNV DEL PEAK  6(3P21.32) WILD-TYPE
  CLUS_1                        3                             11
  CLUS_2                       31                              1
  CLUS_3                       23                              1
D19V3, multiclass
        clus
vv       DEL PEAK  6(3P21.32) CNV DEL PEAK  6(3P21.32) WILD-TYPE
  CLUS_1                      160                              4
  CLUS_2                      215                              1
  CLUS_3                       69                             55
D19V4, multiclass
        clus
vv       DEL PEAK  6(3P21.32) CNV DEL PEAK  6(3P21.32) WILD-TYPE
  CLUS_1                       94                              5
  CLUS_2                      109                             10
  CLUS_3                       54                             17
D19V5, multiclass
D19V6, multiclass
        clus
vv       DEL PEAK  6(3P21.32) CNV DEL PEAK  6(3P21.32) WILD-TYPE
  CLUS_1                      167                             19
  CLUS_2                      142                             10
  CLUS_3                       90                             19
D19V7, multiclass
        clus
vv       DEL PEAK  6(3P21.32) CNV DEL PEAK  6(3P21.32) WILD-TYPE
  CLUS_1                      192                              5
  CLUS_2                      161                             18
  CLUS_3                       63                             34
D19V8, multiclass
        clus
vv       DEL PEAK  6(3P21.32) CNV DEL PEAK  6(3P21.32) WILD-TYPE
  CLUS_1                       38                             31
  CLUS_2                      208                              6
  CLUS_3                      170                             20
D19V9, multiclass
        clus
vv       DEL PEAK  6(3P21.32) CNV DEL PEAK  6(3P21.32) WILD-TYPE
  CLUS_1                       94                             21
  CLUS_2                      185                              6
  CLUS_3                      139                             30
D19V10, multiclass
        clus
vv       DEL PEAK  6(3P21.32) CNV DEL PEAK  6(3P21.32) WILD-TYPE
  CLUS_1                       16                             19
  CLUS_2                      132                             28
  CLUS_3                      270                             10
D19V11, multiclass
        clus
vv       DEL PEAK  6(3P21.32) CNV DEL PEAK  6(3P21.32) WILD-TYPE
  CLUS_1                       38                             12
  CLUS_2                       85                              4
  CLUS_3                       63                             11
D19V12, multiclass
        clus
vv       DEL PEAK  6(3P21.32) CNV DEL PEAK  6(3P21.32) WILD-TYPE
  CLUS_1                       51                              6
  CLUS_2                       89                              3
  CLUS_3                       46                             18

Clustering(20) Variable = Del Peak  7(3p12.3)
D20V1, multiclass
        clus
vv       DEL PEAK  7(3P12.3) CNV DEL PEAK  7(3P12.3) WILD-TYPE
  CLUS_1                      20                            13
  CLUS_2                      17                             7
  CLUS_3                       2                            11
D20V2, multiclass
        clus
vv       DEL PEAK  7(3P12.3) CNV DEL PEAK  7(3P12.3) WILD-TYPE
  CLUS_1                       2                            12
  CLUS_2                      19                            13
  CLUS_3                      18                             6
D20V3, multiclass
        clus
vv       DEL PEAK  7(3P12.3) CNV DEL PEAK  7(3P12.3) WILD-TYPE
  CLUS_1                     145                            19
  CLUS_2                     153                            63
  CLUS_3                      22                           102
D20V4, multiclass
        clus
vv       DEL PEAK  7(3P12.3) CNV DEL PEAK  7(3P12.3) WILD-TYPE
  CLUS_1                      71                            28
  CLUS_2                      80                            39
  CLUS_3                      38                            33
D20V5, multiclass
D20V6, multiclass
        clus
vv       DEL PEAK  7(3P12.3) CNV DEL PEAK  7(3P12.3) WILD-TYPE
  CLUS_1                     117                            69
  CLUS_2                     102                            50
  CLUS_3                      65                            44
D20V7, multiclass
        clus
vv       DEL PEAK  7(3P12.3) CNV DEL PEAK  7(3P12.3) WILD-TYPE
  CLUS_1                     133                            64
  CLUS_2                     121                            58
  CLUS_3                      42                            55
D20V8, multiclass
        clus
vv       DEL PEAK  7(3P12.3) CNV DEL PEAK  7(3P12.3) WILD-TYPE
  CLUS_1                      24                            45
  CLUS_2                     143                            71
  CLUS_3                     129                            61
D20V9, multiclass
        clus
vv       DEL PEAK  7(3P12.3) CNV DEL PEAK  7(3P12.3) WILD-TYPE
  CLUS_1                      62                            53
  CLUS_2                     128                            63
  CLUS_3                     110                            59
D20V10, multiclass
        clus
vv       DEL PEAK  7(3P12.3) CNV DEL PEAK  7(3P12.3) WILD-TYPE
  CLUS_1                      12                            23
  CLUS_2                      95                            65
  CLUS_3                     193                            87
D20V11, multiclass
        clus
vv       DEL PEAK  7(3P12.3) CNV DEL PEAK  7(3P12.3) WILD-TYPE
  CLUS_1                      24                            26
  CLUS_2                      57                            32
  CLUS_3                      54                            20
D20V12, multiclass
        clus
vv       DEL PEAK  7(3P12.3) CNV DEL PEAK  7(3P12.3) WILD-TYPE
  CLUS_1                      42                            15
  CLUS_2                      60                            32
  CLUS_3                      33                            31

Clustering(21) Variable = Del Peak  8(3p12.2)
D21V1, multiclass
        clus
vv       DEL PEAK  8(3P12.2) CNV DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                      18                            15
  CLUS_2                      13                            11
  CLUS_3                       2                            11
D21V2, multiclass
        clus
vv       DEL PEAK  8(3P12.2) CNV DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                       2                            12
  CLUS_2                      17                            15
  CLUS_3                      14                            10
D21V3, multiclass
        clus
vv       DEL PEAK  8(3P12.2) CNV DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                     136                            28
  CLUS_2                     137                            79
  CLUS_3                      19                           105
D21V4, multiclass
        clus
vv       DEL PEAK  8(3P12.2) CNV DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                      64                            35
  CLUS_2                      71                            48
  CLUS_3                      39                            32
D21V5, multiclass
D21V6, multiclass
        clus
vv       DEL PEAK  8(3P12.2) CNV DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                     111                            75
  CLUS_2                      92                            60
  CLUS_3                      57                            52
D21V7, multiclass
        clus
vv       DEL PEAK  8(3P12.2) CNV DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                     116                            81
  CLUS_2                     112                            67
  CLUS_3                      41                            56
D21V8, multiclass
        clus
vv       DEL PEAK  8(3P12.2) CNV DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                      24                            45
  CLUS_2                     125                            89
  CLUS_3                     120                            70
D21V9, multiclass
        clus
vv       DEL PEAK  8(3P12.2) CNV DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                      59                            56
  CLUS_2                     113                            78
  CLUS_3                     100                            69
D21V10, multiclass
        clus
vv       DEL PEAK  8(3P12.2) CNV DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                      12                            23
  CLUS_2                      88                            72
  CLUS_3                     172                           108
D21V11, multiclass
        clus
vv       DEL PEAK  8(3P12.2) CNV DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                      22                            28
  CLUS_2                      49                            40
  CLUS_3                      52                            22
D21V12, multiclass
        clus
vv       DEL PEAK  8(3P12.2) CNV DEL PEAK  8(3P12.2) WILD-TYPE
  CLUS_1                      41                            16
  CLUS_2                      50                            42
  CLUS_3                      32                            32

Clustering(22) Variable = Del Peak  9(3q11.2)
D22V1, multiclass
        clus
vv       DEL PEAK  9(3Q11.2) CNV DEL PEAK  9(3Q11.2) WILD-TYPE
  CLUS_1                      11                            22
  CLUS_2                       8                            16
  CLUS_3                       1                            12
D22V2, multiclass
        clus
vv       DEL PEAK  9(3Q11.2) CNV DEL PEAK  9(3Q11.2) WILD-TYPE
  CLUS_1                       1                            13
  CLUS_2                      10                            22
  CLUS_3                       9                            15
D22V3, multiclass
        clus
vv       DEL PEAK  9(3Q11.2) CNV DEL PEAK  9(3Q11.2) WILD-TYPE
  CLUS_1                      72                            92
  CLUS_2                      69                           147
  CLUS_3                      13                           111
D22V4, multiclass
        clus
vv       DEL PEAK  9(3Q11.2) CNV DEL PEAK  9(3Q11.2) WILD-TYPE
  CLUS_1                      34                            65
  CLUS_2                      37                            82
  CLUS_3                      19                            52
D22V5, multiclass
D22V6, multiclass
        clus
vv       DEL PEAK  9(3Q11.2) CNV DEL PEAK  9(3Q11.2) WILD-TYPE
  CLUS_1                      64                           122
  CLUS_2                      51                           101
  CLUS_3                      26                            83
D22V7, multiclass
        clus
vv       DEL PEAK  9(3Q11.2) CNV DEL PEAK  9(3Q11.2) WILD-TYPE
  CLUS_1                      57                           140
  CLUS_2                      59                           120
  CLUS_3                      26                            71
D22V8, multiclass
        clus
vv       DEL PEAK  9(3Q11.2) CNV DEL PEAK  9(3Q11.2) WILD-TYPE
  CLUS_1                      15                            54
  CLUS_2                      61                           153
  CLUS_3                      66                           124
D22V9, multiclass
        clus
vv       DEL PEAK  9(3Q11.2) CNV DEL PEAK  9(3Q11.2) WILD-TYPE
  CLUS_1                      32                            83
  CLUS_2                      62                           129
  CLUS_3                      51                           118
D22V10, multiclass
        clus
vv       DEL PEAK  9(3Q11.2) CNV DEL PEAK  9(3Q11.2) WILD-TYPE
  CLUS_1                       5                            30
  CLUS_2                      47                           113
  CLUS_3                      93                           187
D22V11, multiclass
        clus
vv       DEL PEAK  9(3Q11.2) CNV DEL PEAK  9(3Q11.2) WILD-TYPE
  CLUS_1                      11                            39
  CLUS_2                      23                            66
  CLUS_3                      27                            47
D22V12, multiclass
        clus
vv       DEL PEAK  9(3Q11.2) CNV DEL PEAK  9(3Q11.2) WILD-TYPE
  CLUS_1                      24                            33
  CLUS_2                      24                            68
  CLUS_3                      13                            51

Clustering(23) Variable = Del Peak 10(3q21.3)
D23V1, multiclass
        clus
vv       DEL PEAK 10(3Q21.3) CNV DEL PEAK 10(3Q21.3) WILD-TYPE
  CLUS_1                       8                            25
  CLUS_2                       5                            19
  CLUS_3                       1                            12
D23V2, multiclass
        clus
vv       DEL PEAK 10(3Q21.3) CNV DEL PEAK 10(3Q21.3) WILD-TYPE
  CLUS_1                       1                            13
  CLUS_2                       7                            25
  CLUS_3                       6                            18
D23V3, multiclass
        clus
vv       DEL PEAK 10(3Q21.3) CNV DEL PEAK 10(3Q21.3) WILD-TYPE
  CLUS_1                      52                           112
  CLUS_2                      40                           176
  CLUS_3                      13                           111
D23V4, multiclass
        clus
vv       DEL PEAK 10(3Q21.3) CNV DEL PEAK 10(3Q21.3) WILD-TYPE
  CLUS_1                      24                            75
  CLUS_2                      25                            94
  CLUS_3                      13                            58
D23V5, multiclass
D23V6, multiclass
        clus
vv       DEL PEAK 10(3Q21.3) CNV DEL PEAK 10(3Q21.3) WILD-TYPE
  CLUS_1                      51                           135
  CLUS_2                      31                           121
  CLUS_3                      18                            91
D23V7, multiclass
        clus
vv       DEL PEAK 10(3Q21.3) CNV DEL PEAK 10(3Q21.3) WILD-TYPE
  CLUS_1                      34                           163
  CLUS_2                      39                           140
  CLUS_3                      23                            74
D23V8, multiclass
        clus
vv       DEL PEAK 10(3Q21.3) CNV DEL PEAK 10(3Q21.3) WILD-TYPE
  CLUS_1                      11                            58
  CLUS_2                      37                           177
  CLUS_3                      48                           142
D23V9, multiclass
        clus
vv       DEL PEAK 10(3Q21.3) CNV DEL PEAK 10(3Q21.3) WILD-TYPE
  CLUS_1                      23                            92
  CLUS_2                      41                           150
  CLUS_3                      36                           133
D23V10, multiclass
        clus
vv       DEL PEAK 10(3Q21.3) CNV DEL PEAK 10(3Q21.3) WILD-TYPE
  CLUS_1                       3                            32
  CLUS_2                      33                           127
  CLUS_3                      64                           216
D23V11, multiclass
        clus
vv       DEL PEAK 10(3Q21.3) CNV DEL PEAK 10(3Q21.3) WILD-TYPE
  CLUS_1                       9                            41
  CLUS_2                      15                            74
  CLUS_3                      20                            54
D23V12, multiclass
        clus
vv       DEL PEAK 10(3Q21.3) CNV DEL PEAK 10(3Q21.3) WILD-TYPE
  CLUS_1                      17                            40
  CLUS_2                      17                            75
  CLUS_3                      10                            54

Clustering(24) Variable = Del Peak 11(4q34.3)
D24V1, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                       6                            27
  CLUS_2                       4                            20
  CLUS_3                       0                            13
D24V2, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                       0                            14
  CLUS_2                       6                            26
  CLUS_3                       4                            20
D24V3, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                      49                           115
  CLUS_2                       8                           208
  CLUS_3                      19                           105
D24V4, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                      30                            69
  CLUS_2                      10                           109
  CLUS_3                      12                            59
D24V5, multiclass
D24V6, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                      23                           163
  CLUS_2                      26                           126
  CLUS_3                      23                            86
D24V7, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                      24                           173
  CLUS_2                      41                           138
  CLUS_3                       6                            91
D24V8, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                       2                            67
  CLUS_2                      24                           190
  CLUS_3                      45                           145
D24V9, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                      19                            96
  CLUS_2                      24                           167
  CLUS_3                      32                           137
D24V10, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                       3                            32
  CLUS_2                      36                           124
  CLUS_3                      36                           244
D24V11, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                       8                            42
  CLUS_2                       9                            80
  CLUS_3                      21                            53
D24V12, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                      16                            41
  CLUS_2                      11                            81
  CLUS_3                      11                            53

Clustering(25) Variable = Del Peak 12(6q26)
D25V1, multiclass
        clus
vv       DEL PEAK 12(6Q26) CNV DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                     7                          26
  CLUS_2                    12                          12
  CLUS_3                     8                           5
D25V2, multiclass
        clus
vv       DEL PEAK 12(6Q26) CNV DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                     8                           6
  CLUS_2                     6                          26
  CLUS_3                    13                          11
D25V3, multiclass
        clus
vv       DEL PEAK 12(6Q26) CNV DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                    89                          75
  CLUS_2                    30                         186
  CLUS_3                    26                          98
D25V4, multiclass
        clus
vv       DEL PEAK 12(6Q26) CNV DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                    33                          66
  CLUS_2                    24                          95
  CLUS_3                    18                          53
D25V5, multiclass
D25V6, multiclass
        clus
vv       DEL PEAK 12(6Q26) CNV DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                    39                         147
  CLUS_2                    47                         105
  CLUS_3                    42                          67
D25V7, multiclass
        clus
vv       DEL PEAK 12(6Q26) CNV DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                    48                         149
  CLUS_2                    68                         111
  CLUS_3                    17                          80
D25V8, multiclass
        clus
vv       DEL PEAK 12(6Q26) CNV DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                    15                          54
  CLUS_2                    51                         163
  CLUS_3                    67                         123
D25V9, multiclass
        clus
vv       DEL PEAK 12(6Q26) CNV DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                    22                          93
  CLUS_2                    39                         152
  CLUS_3                    77                          92
D25V10, multiclass
        clus
vv       DEL PEAK 12(6Q26) CNV DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                    17                          18
  CLUS_2                    50                         110
  CLUS_3                    71                         209
D25V11, multiclass
        clus
vv       DEL PEAK 12(6Q26) CNV DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                     9                          41
  CLUS_2                    19                          70
  CLUS_3                    34                          40
D25V12, multiclass
        clus
vv       DEL PEAK 12(6Q26) CNV DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                    30                          27
  CLUS_2                    18                          74
  CLUS_3                    14                          50

Clustering(26) Variable = Del Peak 13(6q26)
D26V1, multiclass
        clus
vv       DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                     7                          26
  CLUS_2                    12                          12
  CLUS_3                     8                           5
D26V2, multiclass
        clus
vv       DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                     8                           6
  CLUS_2                     6                          26
  CLUS_3                    13                          11
D26V3, multiclass
        clus
vv       DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                    89                          75
  CLUS_2                    30                         186
  CLUS_3                    26                          98
D26V4, multiclass
        clus
vv       DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                    33                          66
  CLUS_2                    24                          95
  CLUS_3                    18                          53
D26V5, multiclass
D26V6, multiclass
        clus
vv       DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                    39                         147
  CLUS_2                    48                         104
  CLUS_3                    41                          68
D26V7, multiclass
        clus
vv       DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                    48                         149
  CLUS_2                    69                         110
  CLUS_3                    16                          81
D26V8, multiclass
        clus
vv       DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                    15                          54
  CLUS_2                    51                         163
  CLUS_3                    67                         123
D26V9, multiclass
        clus
vv       DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                    21                          94
  CLUS_2                    39                         152
  CLUS_3                    78                          91
D26V10, multiclass
        clus
vv       DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                    16                          19
  CLUS_2                    50                         110
  CLUS_3                    72                         208
D26V11, multiclass
        clus
vv       DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                     8                          42
  CLUS_2                    19                          70
  CLUS_3                    35                          39
D26V12, multiclass
        clus
vv       DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                    30                          27
  CLUS_2                    18                          74
  CLUS_3                    14                          50

Clustering(27) Variable = Del Peak 14(8p23.2)
D27V1, multiclass
        clus
vv       DEL PEAK 14(8P23.2) CNV DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                       6                            27
  CLUS_2                       7                            17
  CLUS_3                       4                             9
D27V2, multiclass
        clus
vv       DEL PEAK 14(8P23.2) CNV DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                       4                            10
  CLUS_2                       6                            26
  CLUS_3                       7                            17
D27V3, multiclass
        clus
vv       DEL PEAK 14(8P23.2) CNV DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                      73                            91
  CLUS_2                      40                           176
  CLUS_3                      35                            89
D27V4, multiclass
        clus
vv       DEL PEAK 14(8P23.2) CNV DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                      37                            62
  CLUS_2                      27                            92
  CLUS_3                      19                            52
D27V5, multiclass
D27V6, multiclass
        clus
vv       DEL PEAK 14(8P23.2) CNV DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                      46                           140
  CLUS_2                      47                           105
  CLUS_3                      38                            71
D27V7, multiclass
        clus
vv       DEL PEAK 14(8P23.2) CNV DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                      51                           146
  CLUS_2                      68                           111
  CLUS_3                      19                            78
D27V8, multiclass
        clus
vv       DEL PEAK 14(8P23.2) CNV DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                      14                            55
  CLUS_2                      54                           160
  CLUS_3                      70                           120
D27V9, multiclass
        clus
vv       DEL PEAK 14(8P23.2) CNV DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                      32                            83
  CLUS_2                      43                           148
  CLUS_3                      68                           101
D27V10, multiclass
        clus
vv       DEL PEAK 14(8P23.2) CNV DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                       8                            27
  CLUS_2                      62                            98
  CLUS_3                      73                           207
D27V11, multiclass
        clus
vv       DEL PEAK 14(8P23.2) CNV DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                      12                            38
  CLUS_2                      20                            69
  CLUS_3                      32                            42
D27V12, multiclass
        clus
vv       DEL PEAK 14(8P23.2) CNV DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                      23                            34
  CLUS_2                      19                            73
  CLUS_3                      22                            42

Clustering(28) Variable = Del Peak 15(9p23)
D28V1, multiclass
        clus
vv       DEL PEAK 15(9P23) CNV DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                     5                          28
  CLUS_2                    12                          12
  CLUS_3                     1                          12
D28V2, multiclass
        clus
vv       DEL PEAK 15(9P23) CNV DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                     1                          13
  CLUS_2                     4                          28
  CLUS_3                    13                          11
D28V3, multiclass
        clus
vv       DEL PEAK 15(9P23) CNV DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                   112                          52
  CLUS_2                     3                         213
  CLUS_3                    32                          92
D28V4, multiclass
        clus
vv       DEL PEAK 15(9P23) CNV DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                    60                          39
  CLUS_2                     6                         113
  CLUS_3                    24                          47
D28V5, multiclass
D28V6, multiclass
        clus
vv       DEL PEAK 15(9P23) CNV DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                    40                         146
  CLUS_2                    52                         100
  CLUS_3                    43                          66
D28V7, multiclass
        clus
vv       DEL PEAK 15(9P23) CNV DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                    24                         173
  CLUS_2                   101                          78
  CLUS_3                    13                          84
D28V8, multiclass
        clus
vv       DEL PEAK 15(9P23) CNV DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                     9                          60
  CLUS_2                    24                         190
  CLUS_3                   105                          85
D28V9, multiclass
        clus
vv       DEL PEAK 15(9P23) CNV DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                    26                          89
  CLUS_2                    25                         166
  CLUS_3                    88                          81
D28V10, multiclass
        clus
vv       DEL PEAK 15(9P23) CNV DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                    10                          25
  CLUS_2                    68                          92
  CLUS_3                    61                         219
D28V11, multiclass
        clus
vv       DEL PEAK 15(9P23) CNV DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                    12                          38
  CLUS_2                    11                          78
  CLUS_3                    43                          31
D28V12, multiclass
        clus
vv       DEL PEAK 15(9P23) CNV DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                    33                          24
  CLUS_2                    15                          77
  CLUS_3                    18                          46

Clustering(29) Variable = Del Peak 16(9p21.3)
D29V1, multiclass
        clus
vv       DEL PEAK 16(9P21.3) CNV DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                       5                            28
  CLUS_2                      13                            11
  CLUS_3                       1                            12
D29V2, multiclass
        clus
vv       DEL PEAK 16(9P21.3) CNV DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                       1                            13
  CLUS_2                       4                            28
  CLUS_3                      14                            10
D29V3, multiclass
        clus
vv       DEL PEAK 16(9P21.3) CNV DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                     115                            49
  CLUS_2                       6                           210
  CLUS_3                      33                            91
D29V4, multiclass
        clus
vv       DEL PEAK 16(9P21.3) CNV DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                      60                            39
  CLUS_2                       6                           113
  CLUS_3                      27                            44
D29V5, multiclass
D29V6, multiclass
        clus
vv       DEL PEAK 16(9P21.3) CNV DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                      42                           144
  CLUS_2                      52                           100
  CLUS_3                      48                            61
D29V7, multiclass
        clus
vv       DEL PEAK 16(9P21.3) CNV DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                      26                           171
  CLUS_2                     105                            74
  CLUS_3                      15                            82
D29V8, multiclass
        clus
vv       DEL PEAK 16(9P21.3) CNV DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                       8                            61
  CLUS_2                      25                           189
  CLUS_3                     113                            77
D29V9, multiclass
        clus
vv       DEL PEAK 16(9P21.3) CNV DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                      29                            86
  CLUS_2                      26                           165
  CLUS_3                      91                            78
D29V10, multiclass
        clus
vv       DEL PEAK 16(9P21.3) CNV DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                      11                            24
  CLUS_2                      75                            85
  CLUS_3                      60                           220
D29V11, multiclass
        clus
vv       DEL PEAK 16(9P21.3) CNV DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                      13                            37
  CLUS_2                      11                            78
  CLUS_3                      43                            31
D29V12, multiclass
        clus
vv       DEL PEAK 16(9P21.3) CNV DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                      33                            24
  CLUS_2                      15                            77
  CLUS_3                      19                            45

Clustering(30) Variable = Del Peak 17(10q23.31)
D30V1, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) CNV DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                         5                              28
  CLUS_2                         6                              18
  CLUS_3                         4                               9
D30V2, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) CNV DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                         4                              10
  CLUS_2                         5                              27
  CLUS_3                         6                              18
D30V3, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) CNV DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                        49                             115
  CLUS_2                        13                             203
  CLUS_3                        28                              96
D30V4, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) CNV DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                        30                              69
  CLUS_2                        13                             106
  CLUS_3                        11                              60
D30V5, multiclass
D30V6, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) CNV DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                        29                             157
  CLUS_2                        24                             128
  CLUS_3                        28                              81
D30V7, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) CNV DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                        26                             171
  CLUS_2                        40                             139
  CLUS_3                        19                              78
D30V8, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) CNV DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                        14                              55
  CLUS_2                        28                             186
  CLUS_3                        43                             147
D30V9, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) CNV DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                        22                              93
  CLUS_2                        25                             166
  CLUS_3                        41                             128
D30V10, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) CNV DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                        10                              25
  CLUS_2                        37                             123
  CLUS_3                        41                             239
D30V11, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) CNV DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                         8                              42
  CLUS_2                        11                              78
  CLUS_3                        17                              57
D30V12, multiclass
        clus
vv       DEL PEAK 17(10Q23.31) CNV DEL PEAK 17(10Q23.31) WILD-TYPE
  CLUS_1                        16                              41
  CLUS_2                        11                              81
  CLUS_3                         9                              55

Clustering(31) Variable = Del Peak 18(13q13.3)
D31V1, multiclass
        clus
vv       DEL PEAK 18(13Q13.3) CNV DEL PEAK 18(13Q13.3) WILD-TYPE
  CLUS_1                        1                             32
  CLUS_2                        7                             17
  CLUS_3                        3                             10
D31V2, multiclass
        clus
vv       DEL PEAK 18(13Q13.3) CNV DEL PEAK 18(13Q13.3) WILD-TYPE
  CLUS_1                        3                             11
  CLUS_2                        1                             31
  CLUS_3                        7                             17
D31V3, multiclass
        clus
vv       DEL PEAK 18(13Q13.3) CNV DEL PEAK 18(13Q13.3) WILD-TYPE
  CLUS_1                       43                            121
  CLUS_2                       10                            206
  CLUS_3                       23                            101
D31V4, multiclass
        clus
vv       DEL PEAK 18(13Q13.3) CNV DEL PEAK 18(13Q13.3) WILD-TYPE
  CLUS_1                       18                             81
  CLUS_2                        7                            112
  CLUS_3                       20                             51
D31V5, multiclass
D31V6, multiclass
        clus
vv       DEL PEAK 18(13Q13.3) CNV DEL PEAK 18(13Q13.3) WILD-TYPE
  CLUS_1                       23                            163
  CLUS_2                       23                            129
  CLUS_3                       23                             86
D31V7, multiclass
        clus
vv       DEL PEAK 18(13Q13.3) CNV DEL PEAK 18(13Q13.3) WILD-TYPE
  CLUS_1                       15                            182
  CLUS_2                       48                            131
  CLUS_3                       11                             86
D31V8, multiclass
        clus
vv       DEL PEAK 18(13Q13.3) CNV DEL PEAK 18(13Q13.3) WILD-TYPE
  CLUS_1                        9                             60
  CLUS_2                       14                            200
  CLUS_3                       51                            139
D31V9, multiclass
        clus
vv       DEL PEAK 18(13Q13.3) CNV DEL PEAK 18(13Q13.3) WILD-TYPE
  CLUS_1                       15                            100
  CLUS_2                       14                            177
  CLUS_3                       45                            124
D31V10, multiclass
        clus
vv       DEL PEAK 18(13Q13.3) CNV DEL PEAK 18(13Q13.3) WILD-TYPE
  CLUS_1                       13                             22
  CLUS_2                       36                            124
  CLUS_3                       25                            255
D31V11, multiclass
        clus
vv       DEL PEAK 18(13Q13.3) CNV DEL PEAK 18(13Q13.3) WILD-TYPE
  CLUS_1                        7                             43
  CLUS_2                       10                             79
  CLUS_3                       20                             54
D31V12, multiclass
        clus
vv       DEL PEAK 18(13Q13.3) CNV DEL PEAK 18(13Q13.3) WILD-TYPE
  CLUS_1                       21                             36
  CLUS_2                        6                             86
  CLUS_3                       10                             54

Clustering(32) Variable = Del Peak 19(14q31.1)
D32V1, multiclass
        clus
vv       DEL PEAK 19(14Q31.1) CNV DEL PEAK 19(14Q31.1) WILD-TYPE
  CLUS_1                       10                             23
  CLUS_2                       19                              5
  CLUS_3                        2                             11
D32V2, multiclass
        clus
vv       DEL PEAK 19(14Q31.1) CNV DEL PEAK 19(14Q31.1) WILD-TYPE
  CLUS_1                        3                             11
  CLUS_2                        9                             23
  CLUS_3                       19                              5
D32V3, multiclass
        clus
vv       DEL PEAK 19(14Q31.1) CNV DEL PEAK 19(14Q31.1) WILD-TYPE
  CLUS_1                      117                             47
  CLUS_2                       59                            157
  CLUS_3                       46                             78
D32V4, multiclass
        clus
vv       DEL PEAK 19(14Q31.1) CNV DEL PEAK 19(14Q31.1) WILD-TYPE
  CLUS_1                       60                             39
  CLUS_2                       31                             88
  CLUS_3                       36                             35
D32V5, multiclass
D32V6, multiclass
        clus
vv       DEL PEAK 19(14Q31.1) CNV DEL PEAK 19(14Q31.1) WILD-TYPE
  CLUS_1                       57                            129
  CLUS_2                       92                             60
  CLUS_3                       52                             57
D32V7, multiclass
        clus
vv       DEL PEAK 19(14Q31.1) CNV DEL PEAK 19(14Q31.1) WILD-TYPE
  CLUS_1                       68                            129
  CLUS_2                      126                             53
  CLUS_3                       17                             80
D32V8, multiclass
        clus
vv       DEL PEAK 19(14Q31.1) CNV DEL PEAK 19(14Q31.1) WILD-TYPE
  CLUS_1                       11                             58
  CLUS_2                       76                            138
  CLUS_3                      124                             66
D32V9, multiclass
        clus
vv       DEL PEAK 19(14Q31.1) CNV DEL PEAK 19(14Q31.1) WILD-TYPE
  CLUS_1                       37                             78
  CLUS_2                       64                            127
  CLUS_3                      111                             58
D32V10, multiclass
        clus
vv       DEL PEAK 19(14Q31.1) CNV DEL PEAK 19(14Q31.1) WILD-TYPE
  CLUS_1                       17                             18
  CLUS_2                       76                             84
  CLUS_3                      119                            161
D32V11, multiclass
        clus
vv       DEL PEAK 19(14Q31.1) CNV DEL PEAK 19(14Q31.1) WILD-TYPE
  CLUS_1                       18                             32
  CLUS_2                       31                             58
  CLUS_3                       48                             26
D32V12, multiclass
        clus
vv       DEL PEAK 19(14Q31.1) CNV DEL PEAK 19(14Q31.1) WILD-TYPE
  CLUS_1                       36                             21
  CLUS_2                       35                             57
  CLUS_3                       26                             38
                           V1                            V2 
                  "MRNA_CNMF"          "MRNA_CHIERARCHICAL" 
                           V3                            V4 
                    "CN_CNMF"            "METHLYATION_CNMF" 
                           V5                            V6 
                  "RPPA_CNMF"          "RPPA_CHIERARCHICAL" 
                           V7                            V8 
               "MRNASEQ_CNMF"       "MRNASEQ_CHIERARCHICAL" 
                           V9                           V10 
                "MIRSEQ_CNMF"        "MIRSEQ_CHIERARCHICAL" 
                          V11                           V12 
         "MIRSEQ_MATURE_CNMF" "MIRSEQ_MATURE_CHIERARCHICAL" 
> q(save="no")
